Wall clock time and date at job start Tue Mar 31 2020 14:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46794 * 2 1 4 4 C 1.52998 * 109.47178 * 119.99485 * 2 1 3 5 5 C 1.52997 * 109.46983 * 175.20088 * 4 2 1 6 6 H 1.09002 * 109.46717 * 53.69781 * 5 4 2 7 7 N 1.46493 * 109.47736 * 293.69635 * 5 4 2 8 8 C 1.34777 * 119.99803 * 299.99834 * 7 5 4 9 9 O 1.21507 * 120.00034 * 359.97438 * 8 7 5 10 10 O 1.34640 * 120.00225 * 179.97438 * 8 7 5 11 11 C 1.50701 * 109.47012 * 173.69281 * 5 4 2 12 12 O 1.20822 * 120.00238 * 100.00889 * 11 5 4 13 13 O 1.34235 * 120.00068 * 280.00406 * 11 5 4 14 14 C 1.45192 * 116.99907 * 180.02562 * 13 11 5 15 15 C 1.53073 * 109.45637 * 89.78973 * 14 13 11 16 16 C 1.53191 * 109.30081 * 181.24324 * 15 14 13 17 17 N 1.46932 * 108.88928 * 305.57780 * 16 15 14 18 18 C 1.36939 * 120.62939 * 233.51319 * 17 16 15 19 19 H 1.07993 * 119.99969 * 145.67912 * 18 17 16 20 20 C 1.38815 * 119.99658 * 325.68033 * 18 17 16 21 21 N 1.31612 * 120.00309 * 348.01224 * 20 18 17 22 22 Si 1.86804 * 119.99517 * 168.01263 * 20 18 17 23 23 H 1.48501 * 109.46944 * 90.00021 * 22 20 18 24 24 H 1.48497 * 109.46984 * 209.99987 * 22 20 18 25 25 H 1.48504 * 109.47098 * 330.00107 * 22 20 18 26 26 C 1.46924 * 118.73828 * 53.53483 * 17 16 15 27 27 C 1.53043 * 109.46225 * 209.99832 * 14 13 11 28 28 H 1.08997 * 109.46974 * 55.39160 * 1 2 3 29 29 H 1.09004 * 109.46490 * 175.38471 * 1 2 3 30 30 H 1.08995 * 109.47367 * 295.37983 * 1 2 3 31 31 H 1.09000 * 109.47192 * 240.00433 * 2 1 3 32 32 H 1.08993 * 109.46771 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46633 * 299.99853 * 3 2 1 34 34 H 1.08996 * 109.47447 * 59.99772 * 3 2 1 35 35 H 1.09007 * 109.46990 * 55.20931 * 4 2 1 36 36 H 1.08992 * 109.47630 * 295.20679 * 4 2 1 37 37 H 0.97001 * 120.00451 * 119.99267 * 7 5 4 38 38 H 0.96695 * 117.00365 * 180.02562 * 10 8 7 39 39 H 1.08996 * 109.46392 * 329.97090 * 14 13 11 40 40 H 1.08997 * 109.39086 * 61.36501 * 15 14 13 41 41 H 1.09007 * 109.62208 * 301.25957 * 15 14 13 42 42 H 1.08996 * 109.59237 * 185.72141 * 16 15 14 43 43 H 1.09003 * 109.59008 * 65.43178 * 16 15 14 44 44 H 0.97002 * 120.00121 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58422 * 66.18113 * 26 17 16 46 46 H 1.09002 * 109.58654 * 186.45735 * 26 17 16 47 47 H 1.09000 * 109.49211 * 58.65775 * 27 14 13 48 48 H 1.09001 * 109.49590 * 298.57155 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5653 -0.8265 1.1904 6 1 3.9920 0.1642 1.0337 7 7 3.9518 -1.7052 0.0838 8 6 3.5360 -2.9871 0.0645 9 8 2.8409 -3.4140 0.9650 10 8 3.8908 -3.7946 -0.9528 11 6 4.0799 -1.3958 2.4873 12 8 4.3759 -2.5650 2.5586 13 8 4.2096 -0.6038 3.5634 14 6 4.7118 -1.2198 4.7785 15 6 6.2392 -1.1226 4.8057 16 6 6.7672 -1.8009 6.0737 17 7 6.1013 -1.2092 7.2422 18 6 6.8353 -0.7026 8.2813 19 1 6.4797 0.1615 8.8228 20 6 8.0364 -1.2997 8.6385 21 7 8.3575 -2.4776 8.1472 22 14 9.1971 -0.4311 9.8167 23 1 8.8726 -0.8248 11.2113 24 1 10.5972 -0.8167 9.5065 25 1 9.0440 1.0386 9.6689 26 6 4.6328 -1.1719 7.2747 27 6 4.1283 -0.4977 5.9951 28 1 -0.3633 0.5837 -0.8458 29 1 -0.3632 -1.0244 -0.0827 30 1 -0.3634 0.4404 0.9284 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6083 -1.7211 1.2933 36 1 1.7486 -0.1601 2.1371 37 1 4.5069 -1.3645 -0.6350 38 1 3.5682 -4.7057 -0.9231 39 1 4.4165 -2.2688 4.8027 40 1 6.5351 -0.0736 4.8041 41 1 6.6533 -1.6193 3.9281 42 1 7.8435 -1.6466 6.1496 43 1 6.5531 -2.8689 6.0331 44 1 9.1967 -2.8950 8.3971 45 1 4.2427 -2.1882 7.3306 46 1 4.3009 -0.6048 8.1444 47 1 3.0401 -0.5493 5.9613 48 1 4.4439 0.5456 5.9847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824219439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:02 Heat of formation + Delta-G solvation = -162.978607 kcal Electronic energy + Delta-G solvation = -29648.050051 eV Core-core repulsion = 25510.413555 eV Total energy + Delta-G solvation = -4137.636495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.08722 -39.81393 -37.92171 -37.03973 -36.01375 -35.58199 -34.42356 -32.69345 -30.45770 -29.97456 -29.53755 -27.48689 -25.66328 -24.79350 -23.03322 -22.23667 -21.81596 -20.41264 -20.00317 -19.54016 -19.27819 -17.57811 -17.06970 -16.95153 -16.49615 -15.84776 -15.50491 -15.36061 -15.03506 -14.82620 -14.29174 -14.04127 -13.63709 -13.57303 -13.37588 -13.12215 -12.86778 -12.71946 -12.51256 -12.50016 -12.38024 -12.08247 -11.65053 -11.51430 -11.29430 -11.18239 -11.12726 -11.05212 -10.96009 -10.76670 -10.67470 -10.61560 -10.30513 -10.22875 -10.17450 -9.96369 -9.73247 -9.40509 -9.31277 -8.49961 -6.62417 -5.81308 -3.31643 2.02438 2.45252 2.67985 3.03979 3.36431 3.43011 3.45160 4.28298 4.45313 4.47144 4.54402 4.66538 4.70841 4.89103 5.03460 5.28127 5.34065 5.35660 5.39330 5.42452 5.45934 5.55185 5.56369 5.62448 5.71780 5.77432 5.88939 5.92249 6.04417 6.06055 6.09628 6.23554 6.31698 6.48426 6.50001 6.53891 6.60052 6.72699 6.91121 6.99344 7.13890 7.29970 7.59965 7.78788 8.02270 8.32214 8.46555 9.19086 9.79736 10.40311 11.27594 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.002790 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.978362 B =10031.999344 C =10779.931121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.133 4.133 5 C 0.180 3.820 6 H 0.131 0.869 7 N -0.698 5.698 8 C 0.668 3.332 9 O -0.548 6.548 10 O -0.531 6.531 11 C 0.439 3.561 12 O -0.477 6.477 13 O -0.359 6.359 14 C 0.100 3.900 15 C -0.152 4.152 16 C 0.179 3.821 17 N -0.591 5.591 18 C -0.259 4.259 19 H 0.064 0.936 20 C 0.008 3.992 21 N -0.901 5.901 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.148 3.852 27 C -0.127 4.127 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.413 0.587 38 H 0.429 0.571 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.255 0.745 45 H 0.021 0.979 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.843 5.507 -20.764 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.211 4.211 4 C -0.171 4.171 5 C 0.074 3.926 6 H 0.148 0.852 7 N -0.360 5.360 8 C 0.420 3.580 9 O -0.434 6.434 10 O -0.342 6.342 11 C 0.278 3.722 12 O -0.362 6.362 13 O -0.276 6.276 14 C 0.046 3.954 15 C -0.192 4.192 16 C 0.053 3.947 17 N -0.314 5.314 18 C -0.389 4.389 19 H 0.082 0.918 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.734 3.266 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.021 3.979 27 C -0.166 4.166 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.248 0.752 38 H 0.288 0.712 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.773 5.160 -20.234 24.479 hybrid contribution 0.895 -0.253 0.303 0.979 sum -11.878 4.907 -19.931 23.715 Atomic orbital electron populations 1.21810 0.94759 1.01842 1.01956 1.21071 0.96154 0.96135 0.97682 1.21961 1.01004 0.95833 1.02253 1.22129 0.91390 1.03985 0.99617 1.20498 0.97412 0.92933 0.81762 0.85153 1.44159 1.56979 1.08497 1.26346 1.17668 0.78715 0.81836 0.79826 1.91069 1.40656 1.74576 1.37074 1.84128 1.74602 1.27963 1.47474 1.23703 0.76134 0.85779 0.86577 1.90718 1.44346 1.17223 1.83917 1.86495 1.76795 1.43583 1.20707 1.22905 0.94977 0.97670 0.79826 1.22662 0.93070 1.02260 1.01210 1.20679 0.98367 0.93691 0.82002 1.44038 0.99118 1.70446 1.17805 1.19123 1.02843 1.07579 1.09366 0.91804 1.25263 1.00339 0.95147 0.98392 1.69992 1.23668 1.14239 1.46518 0.86278 0.80232 0.79257 0.80853 1.21237 1.21548 1.20333 1.20907 0.86228 0.97075 0.93694 1.22216 0.99104 1.00943 0.94332 0.92579 0.92700 0.92379 0.91093 0.92548 0.92538 0.92090 0.88618 0.89438 0.75173 0.71168 0.90423 0.91756 0.92983 0.89601 0.95911 0.93482 0.96141 0.91786 0.92283 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 2 C -0.09 -0.67 2.87 -90.62 -0.26 -0.93 16 3 C -0.15 -0.92 8.95 37.16 0.33 -0.59 16 4 C -0.13 -1.31 4.02 -26.73 -0.11 -1.41 16 5 C 0.18 1.90 3.00 -69.09 -0.21 1.70 16 6 H 0.13 0.99 6.28 -51.93 -0.33 0.66 16 7 N -0.70 -6.84 4.64 -59.87 -0.28 -7.12 16 8 C 0.67 8.26 7.87 54.06 0.43 8.68 16 9 O -0.55 -8.92 12.99 -27.09 -0.35 -9.27 16 10 O -0.53 -4.90 13.48 -40.32 -0.54 -5.45 16 11 C 0.44 6.95 6.91 36.01 0.25 7.20 16 12 O -0.48 -9.37 12.90 -26.52 -0.34 -9.71 16 13 O -0.36 -5.97 9.88 -39.27 -0.39 -6.36 16 14 C 0.10 1.91 2.41 -26.67 -0.06 1.85 16 15 C -0.15 -3.15 5.73 -26.60 -0.15 -3.31 16 16 C 0.18 4.43 5.23 -3.71 -0.02 4.41 16 17 N -0.59 -15.10 2.97 -172.32 -0.51 -15.61 16 18 C -0.26 -7.15 9.54 -15.06 -0.14 -7.29 16 19 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 20 C 0.01 0.23 4.99 -17.43 -0.09 0.14 16 21 N -0.90 -26.47 11.36 55.49 0.63 -25.84 16 22 Si 0.90 21.65 29.57 -169.99 -5.03 16.62 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.15 3.16 6.52 -3.72 -0.02 3.14 16 27 C -0.13 -2.31 5.74 -26.61 -0.15 -2.46 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 32 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.19 6.02 -51.93 -0.31 0.88 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.41 2.73 8.94 -40.82 -0.36 2.37 16 38 H 0.43 2.31 9.11 45.56 0.42 2.72 16 39 H 0.08 1.64 7.16 -51.93 -0.37 1.26 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.09 2.33 6.39 -51.93 -0.33 2.00 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.31 7.93 -51.93 -0.41 0.89 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 381.89 15.07 5.75 5.75 Total: -1.00 -35.33 381.89 -7.98 -43.31 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.06 Total: 3.21 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 0.13 Total: 10.44 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.16 Total: -48.57 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.63 Total: -30.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.33 -7.98 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824219439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.664 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds