Wall clock time and date at job start Tue Mar 31 2020 15:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.46831 * 2 1 4 4 C 1.52992 * 109.47373 * 240.00088 * 2 1 3 5 5 C 1.50700 * 109.47188 * 64.99679 * 4 2 1 6 6 O 1.20823 * 120.00584 * 0.02562 * 5 4 2 7 7 O 1.34238 * 120.00042 * 180.02562 * 5 4 2 8 8 C 1.50702 * 109.47130 * 119.99606 * 2 1 3 9 9 O 1.21278 * 119.99758 * 106.39750 * 8 2 1 10 10 N 1.34776 * 120.00184 * 286.39071 * 8 2 1 11 11 C 1.46503 * 119.99684 * 5.00024 * 10 8 2 12 12 C 1.50699 * 109.46771 * 264.59709 * 11 10 8 13 13 H 1.07999 * 120.00401 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00003 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99764 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00199 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47059 * 89.99717 * 16 14 12 18 18 H 1.48501 * 109.47318 * 210.00033 * 16 14 12 19 19 H 1.48506 * 109.47214 * 330.00285 * 16 14 12 20 20 C 1.46492 * 120.00159 * 184.99513 * 10 8 2 21 21 C 1.53003 * 109.47317 * 270.00591 * 20 10 8 22 22 N 1.46894 * 109.47539 * 179.97438 * 21 20 10 23 23 C 1.47011 * 111.00111 * 293.63430 * 22 21 20 24 24 C 1.53102 * 109.25938 * 177.60230 * 23 22 21 25 25 O 1.43020 * 109.25280 * 56.85172 * 24 23 22 26 26 C 1.43013 * 113.73880 * 301.32535 * 25 24 23 27 27 C 1.47008 * 111.00216 * 169.99618 * 22 21 20 28 28 H 1.08997 * 109.47343 * 288.90580 * 1 2 3 29 29 H 1.08998 * 109.47296 * 48.90688 * 1 2 3 30 30 H 1.08998 * 109.47345 * 168.90719 * 1 2 3 31 31 H 1.09002 * 109.47623 * 184.99422 * 4 2 1 32 32 H 1.09001 * 109.47428 * 304.99728 * 4 2 1 33 33 H 0.96694 * 116.99748 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47406 * 24.59623 * 11 10 8 35 35 H 1.09004 * 109.46694 * 144.60327 * 11 10 8 36 36 H 0.97003 * 119.99791 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.47591 * 150.00083 * 20 10 8 38 38 H 1.09001 * 109.47152 * 30.00051 * 20 10 8 39 39 H 1.09002 * 109.46976 * 59.99512 * 21 20 10 40 40 H 1.09005 * 109.46998 * 300.00051 * 21 20 10 41 41 H 1.08997 * 109.50530 * 297.54102 * 23 22 21 42 42 H 1.09007 * 109.50837 * 57.66974 * 23 22 21 43 43 H 1.08999 * 109.51017 * 296.91436 * 24 23 22 44 44 H 1.09000 * 109.54019 * 176.80523 * 24 23 22 45 45 H 1.08998 * 109.50710 * 298.74050 * 26 25 24 46 46 H 1.08996 * 109.54022 * 178.63149 * 26 25 24 47 47 H 1.08999 * 109.51281 * 302.32900 * 27 22 21 48 48 H 1.09001 * 109.50820 * 62.41659 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 8 1.0140 1.0835 -2.3638 7 8 1.9831 -0.3901 -3.6952 8 6 2.0323 -0.7103 1.2305 9 8 2.5140 -1.8194 1.1363 10 7 1.9464 -0.1131 2.4357 11 6 1.2667 1.1781 2.5665 12 6 2.2822 2.2894 2.4985 13 1 3.3291 2.0573 2.3702 14 6 1.8748 3.6028 2.6001 15 7 0.6000 3.8855 2.7568 16 14 3.1336 4.9803 2.5165 17 1 3.3106 5.4042 1.1043 18 1 2.6601 6.1333 3.3238 19 1 4.4311 4.4986 3.0549 20 6 2.5326 -0.7551 3.6148 21 6 1.4899 -1.6602 4.2740 22 7 2.0779 -2.3044 5.4560 23 6 3.1471 -3.2369 5.0707 24 6 3.7708 -3.8393 6.3325 25 8 2.7497 -4.4759 7.1055 26 6 1.6926 -3.5966 7.4985 27 6 1.0479 -2.9916 6.2486 28 1 -0.3634 0.3330 0.9722 29 1 -0.3634 0.6754 -0.7745 30 1 -0.3634 -1.0084 -0.1977 31 1 3.1263 -0.7993 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 1.7046 0.1430 -4.4524 34 1 0.5469 1.2936 1.7562 35 1 0.7464 1.2194 3.5234 36 1 0.3134 4.8095 2.8278 37 1 2.8510 0.0089 4.3239 38 1 3.3932 -1.3522 3.3132 39 1 1.1716 -2.4242 3.5648 40 1 0.6292 -1.0631 4.5756 41 1 2.7305 -4.0337 4.4545 42 1 3.9112 -2.7016 4.5069 43 1 4.2344 -3.0487 6.9225 44 1 4.5255 -4.5737 6.0512 45 1 2.0957 -2.7989 8.1224 46 1 0.9438 -4.1549 8.0604 47 1 0.2796 -2.2774 6.5447 48 1 0.5973 -3.7840 5.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827248395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:45 Heat of formation + Delta-G solvation = -168.167096 kcal Electronic energy + Delta-G solvation = -29471.649533 eV Core-core repulsion = 25333.788048 eV Total energy + Delta-G solvation = -4137.861485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35052 -39.66519 -39.12338 -36.30131 -36.02679 -34.89965 -33.89256 -32.58926 -31.25108 -29.87112 -28.09243 -27.27319 -26.02796 -24.08788 -23.88909 -22.81961 -22.08204 -20.57288 -20.28617 -18.32648 -17.77684 -17.06692 -16.59611 -16.53706 -16.15450 -15.89540 -15.62112 -15.34984 -15.11687 -14.98685 -14.66001 -14.37186 -14.36486 -13.90948 -13.45531 -13.01799 -12.91509 -12.75472 -12.37739 -12.26756 -12.22269 -12.02846 -11.83329 -11.53633 -11.42680 -11.28114 -11.18708 -11.03874 -10.95684 -10.74687 -10.68596 -10.52480 -10.38977 -10.28060 -10.07748 -9.81162 -9.64267 -9.06057 -8.52792 -8.35480 -7.79485 -6.18438 -4.25131 2.37335 3.07257 3.23839 3.26053 3.31170 3.34160 3.61146 3.81288 4.17613 4.34741 4.84018 4.87810 4.98679 5.00829 5.11074 5.14570 5.21422 5.25502 5.28958 5.45043 5.50945 5.54416 5.58670 5.63106 5.75380 5.77385 5.82335 5.89340 5.93472 5.94614 5.94808 6.23796 6.25762 6.42150 6.48940 6.55045 6.68459 6.76420 6.97690 7.03173 7.08847 7.20876 7.48888 7.74583 8.03205 8.04028 8.26936 8.74969 8.91214 9.42377 10.88593 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.003944 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.507436 B = 7098.107816 C = 9331.812620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 H 0.120 0.880 4 C -0.092 4.092 5 C 0.476 3.524 6 O -0.504 6.504 7 O -0.522 6.522 8 C 0.523 3.477 9 O -0.577 6.577 10 N -0.589 5.589 11 C 0.224 3.776 12 C -0.539 4.539 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.127 3.873 21 C 0.045 3.955 22 N -0.533 5.533 23 C 0.016 3.984 24 C 0.064 3.936 25 O -0.390 6.390 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 -11.726 -0.198 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 H 0.137 0.863 4 C -0.129 4.129 5 C 0.319 3.681 6 O -0.391 6.391 7 O -0.334 6.334 8 C 0.311 3.689 9 O -0.459 6.459 10 N -0.319 5.319 11 C 0.104 3.896 12 C -0.577 4.577 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C 0.003 3.997 21 C -0.084 4.084 22 N -0.259 5.259 23 C -0.113 4.113 24 C -0.013 4.013 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.358 -11.887 0.531 11.976 hybrid contribution -0.001 1.107 -1.141 1.590 sum 1.357 -10.781 -0.610 10.883 Atomic orbital electron populations 1.22025 0.92620 1.01601 1.04600 1.21027 0.98289 1.02124 0.90448 0.86253 1.21150 1.04247 0.99639 0.87911 1.23624 0.75891 0.84063 0.84569 1.90743 1.37059 1.24411 1.86858 1.84551 1.75165 1.56523 1.17180 1.20306 0.78309 0.85307 0.84976 1.90589 1.48173 1.20220 1.86892 1.48154 1.55223 1.22623 1.05872 1.19790 0.93082 0.77582 0.99102 1.21433 0.94126 0.90707 1.51481 0.92146 1.24912 0.95351 0.98720 0.94632 1.69908 1.14337 1.19653 1.48805 0.86536 0.81495 0.81488 0.78205 1.20479 1.21078 1.19818 1.21184 0.94864 0.96146 0.87549 1.22504 0.98398 0.97267 0.90231 1.62134 1.11519 1.30473 1.21745 1.22834 0.95825 0.95191 0.97416 1.22686 0.89953 0.97339 0.91299 1.87951 1.34139 1.36696 1.72038 1.22650 0.89746 0.93618 0.95201 1.22764 0.94765 0.97804 0.95678 0.90424 0.90316 0.93413 0.87438 0.87322 0.73615 0.92549 0.94762 0.92507 0.89396 0.91210 0.94502 0.90389 0.93935 0.89105 0.92198 0.88622 0.92191 0.88689 0.89548 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.32 37.16 0.31 -2.25 16 2 C -0.10 -1.74 1.55 -91.78 -0.14 -1.88 16 3 H 0.12 2.43 7.30 -51.92 -0.38 2.05 16 4 C -0.09 -1.36 4.59 -27.89 -0.13 -1.48 16 5 C 0.48 6.86 8.08 36.01 0.29 7.16 16 6 O -0.50 -8.84 14.78 -18.75 -0.28 -9.12 16 7 O -0.52 -5.83 13.42 -39.28 -0.53 -6.36 16 8 C 0.52 10.19 6.91 -10.98 -0.08 10.11 16 9 O -0.58 -11.82 15.71 5.56 0.09 -11.74 16 10 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 11 C 0.22 5.10 4.61 -5.19 -0.02 5.07 16 12 C -0.54 -13.70 9.14 -34.44 -0.31 -14.01 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -24.27 13.29 55.43 0.74 -23.53 16 16 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.13 2.27 5.32 -4.04 -0.02 2.25 16 21 C 0.04 0.71 5.28 -3.83 -0.02 0.69 16 22 N -0.53 -7.53 4.73 -234.31 -1.11 -8.64 16 23 C 0.02 0.20 5.44 -3.71 -0.02 0.18 16 24 C 0.06 0.73 7.01 37.21 0.26 0.99 16 25 O -0.39 -4.95 10.83 -35.23 -0.38 -5.33 16 26 C 0.06 0.71 7.01 37.21 0.26 0.97 16 27 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 28 H 0.08 1.41 5.57 -51.93 -0.29 1.12 16 29 H 0.08 1.37 6.24 -51.93 -0.32 1.05 16 30 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.11 1.49 8.06 -51.93 -0.42 1.07 16 33 H 0.41 2.75 9.10 45.56 0.41 3.16 16 34 H 0.06 1.32 4.15 -51.93 -0.22 1.10 16 35 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 37 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 38 H 0.07 1.25 5.87 -51.93 -0.30 0.95 16 39 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 40 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.20 6.38 -51.92 -0.33 0.87 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -30.75 384.71 -7.74 -38.49 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.87 Total: 7.43 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 0.26 Total: 9.66 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.80 Total: -44.38 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.10 Total: -32.54 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.75 -7.74 -38.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827248395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.681 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds