Wall clock time and date at job start Tue Mar 31 2020 15:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.46831 * 2 1 4 4 C 1.52992 * 109.47373 * 240.00088 * 2 1 3 5 5 C 1.50700 * 109.47188 * 64.99679 * 4 2 1 6 6 O 1.20823 * 120.00584 * 0.02562 * 5 4 2 7 7 O 1.34238 * 120.00042 * 180.02562 * 5 4 2 8 8 C 1.50702 * 109.47130 * 119.99606 * 2 1 3 9 9 O 1.21278 * 119.99758 * 106.39750 * 8 2 1 10 10 N 1.34776 * 120.00184 * 286.39071 * 8 2 1 11 11 C 1.46503 * 119.99684 * 5.00024 * 10 8 2 12 12 C 1.50699 * 109.46771 * 264.59709 * 11 10 8 13 13 H 1.07999 * 120.00401 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00003 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99764 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00199 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47059 * 89.99717 * 16 14 12 18 18 H 1.48501 * 109.47318 * 210.00033 * 16 14 12 19 19 H 1.48506 * 109.47214 * 330.00285 * 16 14 12 20 20 C 1.46492 * 120.00159 * 184.99513 * 10 8 2 21 21 C 1.53003 * 109.47317 * 270.00591 * 20 10 8 22 22 N 1.46894 * 109.47539 * 179.97438 * 21 20 10 23 23 C 1.47011 * 111.00111 * 293.63430 * 22 21 20 24 24 C 1.53102 * 109.25938 * 177.60230 * 23 22 21 25 25 O 1.43020 * 109.25280 * 56.85172 * 24 23 22 26 26 C 1.43013 * 113.73880 * 301.32535 * 25 24 23 27 27 C 1.47008 * 111.00216 * 169.99618 * 22 21 20 28 28 H 1.08997 * 109.47343 * 288.90580 * 1 2 3 29 29 H 1.08998 * 109.47296 * 48.90688 * 1 2 3 30 30 H 1.08998 * 109.47345 * 168.90719 * 1 2 3 31 31 H 1.09002 * 109.47623 * 184.99422 * 4 2 1 32 32 H 1.09001 * 109.47428 * 304.99728 * 4 2 1 33 33 H 0.96694 * 116.99748 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47406 * 24.59623 * 11 10 8 35 35 H 1.09004 * 109.46694 * 144.60327 * 11 10 8 36 36 H 0.97003 * 119.99791 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.47591 * 150.00083 * 20 10 8 38 38 H 1.09001 * 109.47152 * 30.00051 * 20 10 8 39 39 H 1.09002 * 109.46976 * 59.99512 * 21 20 10 40 40 H 1.09005 * 109.46998 * 300.00051 * 21 20 10 41 41 H 1.08997 * 109.50530 * 297.54102 * 23 22 21 42 42 H 1.09007 * 109.50837 * 57.66974 * 23 22 21 43 43 H 1.08999 * 109.51017 * 296.91436 * 24 23 22 44 44 H 1.09000 * 109.54019 * 176.80523 * 24 23 22 45 45 H 1.08998 * 109.50710 * 298.74050 * 26 25 24 46 46 H 1.08996 * 109.54022 * 178.63149 * 26 25 24 47 47 H 1.08999 * 109.51281 * 302.32900 * 27 22 21 48 48 H 1.09001 * 109.50820 * 62.41659 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 8 1.0140 1.0835 -2.3638 7 8 1.9831 -0.3901 -3.6952 8 6 2.0323 -0.7103 1.2305 9 8 2.5140 -1.8194 1.1363 10 7 1.9464 -0.1131 2.4357 11 6 1.2667 1.1781 2.5665 12 6 2.2822 2.2894 2.4985 13 1 3.3291 2.0573 2.3702 14 6 1.8748 3.6028 2.6001 15 7 0.6000 3.8855 2.7568 16 14 3.1336 4.9803 2.5165 17 1 3.3106 5.4042 1.1043 18 1 2.6601 6.1333 3.3238 19 1 4.4311 4.4986 3.0549 20 6 2.5326 -0.7551 3.6148 21 6 1.4899 -1.6602 4.2740 22 7 2.0779 -2.3044 5.4560 23 6 3.1471 -3.2369 5.0707 24 6 3.7708 -3.8393 6.3325 25 8 2.7497 -4.4759 7.1055 26 6 1.6926 -3.5966 7.4985 27 6 1.0479 -2.9916 6.2486 28 1 -0.3634 0.3330 0.9722 29 1 -0.3634 0.6754 -0.7745 30 1 -0.3634 -1.0084 -0.1977 31 1 3.1263 -0.7993 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 1.7046 0.1430 -4.4524 34 1 0.5469 1.2936 1.7562 35 1 0.7464 1.2194 3.5234 36 1 0.3134 4.8095 2.8278 37 1 2.8510 0.0089 4.3239 38 1 3.3932 -1.3522 3.3132 39 1 1.1716 -2.4242 3.5648 40 1 0.6292 -1.0631 4.5756 41 1 2.7305 -4.0337 4.4545 42 1 3.9112 -2.7016 4.5069 43 1 4.2344 -3.0487 6.9225 44 1 4.5255 -4.5737 6.0512 45 1 2.0957 -2.7989 8.1224 46 1 0.9438 -4.1549 8.0604 47 1 0.2796 -2.2774 6.5447 48 1 0.5973 -3.7840 5.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827248395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:44 Heat of formation + Delta-G solvation = -189.827171 kcal Electronic energy + Delta-G solvation = -29472.588785 eV Core-core repulsion = 25333.788048 eV Total energy + Delta-G solvation = -4138.800737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64145 -40.86974 -40.35678 -37.51144 -37.17533 -36.44100 -35.25346 -34.51048 -32.21310 -31.22071 -29.36028 -29.06401 -27.29044 -25.49193 -25.01551 -24.49173 -23.32904 -21.79696 -21.36671 -19.75748 -19.08205 -18.62891 -18.28413 -17.72615 -17.18340 -17.07348 -16.88408 -16.86304 -16.25935 -16.15889 -16.03793 -15.91340 -15.59622 -15.21278 -14.80033 -14.33938 -14.29113 -14.14616 -13.93693 -13.73835 -13.44987 -13.24763 -13.21956 -13.03882 -12.83203 -12.66165 -12.51219 -12.41705 -12.32714 -12.22337 -12.08685 -12.06566 -11.75408 -11.62682 -11.48431 -11.47573 -10.74441 -10.69048 -10.47104 -9.58260 -9.40641 -8.19163 -6.31890 1.23557 1.40890 1.42851 1.51293 1.67291 1.91840 2.32235 2.44646 2.84769 2.99012 3.12398 3.54707 3.74185 3.82498 3.93674 3.96978 3.99525 4.12826 4.19026 4.30736 4.36240 4.39766 4.46409 4.54048 4.58578 4.61601 4.64138 4.71416 4.77651 4.81266 4.86263 4.87163 4.93022 4.98194 5.01979 5.12284 5.16901 5.36702 5.64027 5.68241 5.75060 5.90780 5.93193 6.07553 6.16077 6.55243 6.80873 7.04438 7.24615 7.40418 8.86645 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.003944 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.507436 B = 7098.107816 C = 9331.812620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.091 0.909 4 C -0.088 4.088 5 C 0.488 3.512 6 O -0.540 6.540 7 O -0.510 6.510 8 C 0.522 3.478 9 O -0.584 6.584 10 N -0.593 5.593 11 C 0.240 3.760 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.023 3.977 15 N -0.918 5.918 16 Si 0.951 3.049 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.129 3.871 21 C 0.061 3.939 22 N -0.539 5.539 23 C 0.016 3.984 24 C 0.067 3.933 25 O -0.403 6.403 26 C 0.066 3.934 27 C 0.017 3.983 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.428 0.572 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.267 0.733 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.116 0.884 45 H 0.064 0.936 46 H 0.120 0.880 47 H 0.094 0.906 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -12.679 -0.376 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.109 0.891 4 C -0.126 4.126 5 C 0.332 3.668 6 O -0.430 6.430 7 O -0.323 6.323 8 C 0.311 3.689 9 O -0.466 6.466 10 N -0.323 5.323 11 C 0.119 3.881 12 C -0.584 4.584 13 H 0.071 0.929 14 C -0.178 4.178 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.194 1.194 20 C 0.006 3.994 21 C -0.068 4.068 22 N -0.265 5.265 23 C -0.112 4.112 24 C -0.009 4.009 25 O -0.322 6.322 26 C -0.011 4.011 27 C -0.111 4.111 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.289 0.711 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.112 0.888 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.086 -12.868 0.335 13.040 hybrid contribution -0.203 1.342 -1.125 1.763 sum 1.882 -11.526 -0.791 11.705 Atomic orbital electron populations 1.21925 0.92016 1.02706 1.03329 1.20940 0.98762 1.00649 0.91220 0.89102 1.21082 1.04671 0.99952 0.86879 1.23380 0.74977 0.83144 0.85322 1.90745 1.38882 1.25940 1.87480 1.84487 1.74458 1.56506 1.16888 1.20568 0.77926 0.85212 0.85152 1.90577 1.48536 1.20521 1.87002 1.48114 1.55276 1.21941 1.06933 1.19429 0.92491 0.78266 0.97899 1.21656 0.94179 0.91655 1.50860 0.92895 1.25593 0.96870 1.00799 0.94493 1.69997 1.15755 1.20092 1.49846 0.85651 0.79548 0.78991 0.78084 1.20377 1.20643 1.19361 1.21202 0.95463 0.95953 0.86809 1.22228 0.97457 0.96515 0.90649 1.62151 1.12268 1.31327 1.20765 1.22862 0.95379 0.94584 0.98362 1.22756 0.89953 0.97972 0.90264 1.87938 1.34652 1.37503 1.72073 1.22782 0.89882 0.93898 0.94513 1.22867 0.94601 0.97765 0.95913 0.92192 0.90803 0.91199 0.86737 0.85668 0.71070 0.92999 0.96422 0.92441 0.90497 0.91088 0.95682 0.90976 0.94977 0.89531 0.91732 0.86604 0.91818 0.86258 0.88759 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 8.32 71.98 0.60 -4.23 16 2 C -0.09 -3.37 1.55 -11.54 -0.02 -3.38 16 3 H 0.09 3.79 7.30 -2.38 -0.02 3.78 16 4 C -0.09 -2.49 4.59 29.85 0.14 -2.36 16 5 C 0.49 13.37 8.08 71.24 0.58 13.94 16 6 O -0.54 -18.70 14.78 21.97 0.32 -18.38 16 7 O -0.51 -10.09 13.42 -51.49 -0.69 -10.78 16 8 C 0.52 20.38 6.91 87.66 0.61 20.98 16 9 O -0.58 -23.53 15.71 -3.02 -0.05 -23.58 16 10 N -0.59 -24.14 2.46 -826.17 -2.03 -26.17 16 11 C 0.24 11.22 4.61 85.63 0.39 11.62 16 12 C -0.54 -28.16 9.14 25.60 0.23 -27.93 16 13 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 14 C 0.02 1.21 5.46 84.66 0.46 1.67 16 15 N -0.92 -50.76 13.29 21.45 0.28 -50.48 16 16 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.13 4.71 5.32 86.38 0.46 5.17 16 21 C 0.06 1.95 5.28 86.31 0.46 2.41 16 22 N -0.54 -15.00 4.73 -895.22 -4.23 -19.23 16 23 C 0.02 0.42 5.44 86.32 0.47 0.89 16 24 C 0.07 1.43 7.01 72.02 0.50 1.94 16 25 O -0.40 -9.48 10.83 -148.98 -1.61 -11.09 16 26 C 0.07 1.31 7.01 72.02 0.50 1.82 16 27 C 0.02 0.39 5.64 86.32 0.49 0.87 16 28 H 0.06 2.23 5.57 -2.39 -0.01 2.21 16 29 H 0.07 2.59 6.24 -2.39 -0.01 2.57 16 30 H 0.07 2.01 8.07 -2.39 -0.02 2.00 16 31 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.13 3.15 8.06 -2.39 -0.02 3.13 16 33 H 0.43 4.65 9.10 -74.06 -0.67 3.97 16 34 H 0.05 2.51 4.15 -2.39 -0.01 2.50 16 35 H 0.02 0.88 8.11 -2.39 -0.02 0.86 16 36 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.08 2.95 8.07 -2.39 -0.02 2.93 16 38 H 0.07 2.56 5.87 -2.39 -0.01 2.55 16 39 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 40 H 0.07 2.39 8.04 -2.38 -0.02 2.37 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 2.26 6.38 -2.38 -0.02 2.24 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 48 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -65.21 384.71 0.19 -65.01 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.30 Total: 27.02 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 5.87 Total: 23.41 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -5.98 Total: -95.88 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -2.03 Total: -63.84 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -65.21 0.19 -65.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827248395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.813 kcal (2) G-P(sol) polarization free energy of solvation -65.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds