Wall clock time and date at job start Tue Mar 31 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46502 * 109.46675 * 2 1 4 4 C 1.46494 * 120.00079 * 269.99402 * 3 2 1 5 5 C 1.50698 * 109.47497 * 270.00818 * 4 3 2 6 6 H 1.08004 * 120.00079 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00234 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00124 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47560 * 89.99324 * 9 7 5 11 11 H 1.48505 * 109.47278 * 209.99879 * 9 7 5 12 12 H 1.48503 * 109.47097 * 329.99552 * 9 7 5 13 13 C 1.34774 * 120.00041 * 90.00349 * 3 2 1 14 14 O 1.21284 * 120.00267 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99941 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47322 * 180.02562 * 15 13 3 17 17 C 1.46900 * 111.00080 * 179.04162 * 16 15 13 18 18 C 1.52994 * 109.54265 * 54.37339 * 17 16 15 19 19 C 1.50701 * 109.47407 * 55.72127 * 18 17 16 20 20 O 1.20829 * 119.99959 * 5.89795 * 19 18 17 21 21 O 1.34228 * 120.00567 * 185.89641 * 19 18 17 22 22 C 1.53176 * 109.61211 * 174.59445 * 17 16 15 23 23 C 1.53094 * 109.16431 * 62.93220 * 22 17 16 24 24 O 1.42902 * 109.41403 * 57.60598 * 23 22 17 25 25 C 1.42902 * 114.09732 * 298.83984 * 24 23 22 26 26 C 1.53097 * 109.41274 * 61.16166 * 25 24 23 27 27 H 1.09001 * 109.47192 * 300.00136 * 1 2 3 28 28 H 1.08996 * 109.46878 * 60.00218 * 1 2 3 29 29 H 1.09000 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47252 * 240.00202 * 2 1 3 31 31 H 1.08996 * 109.46878 * 119.99782 * 2 1 3 32 32 H 1.08999 * 109.47010 * 30.00520 * 4 3 2 33 33 H 1.08997 * 109.47391 * 150.00377 * 4 3 2 34 34 H 0.96999 * 120.00105 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.47178 * 60.00305 * 15 13 3 36 36 H 1.09006 * 109.47081 * 299.99773 * 15 13 3 37 37 H 1.00901 * 110.99376 * 302.99739 * 16 15 13 38 38 H 1.08998 * 109.47111 * 175.71953 * 18 17 16 39 39 H 1.08998 * 109.47078 * 295.72672 * 18 17 16 40 40 H 0.96699 * 117.00551 * 179.97438 * 21 19 18 41 41 H 1.09003 * 109.51773 * 182.83530 * 22 17 16 42 42 H 1.09000 * 109.52613 * 303.02389 * 22 17 16 43 43 H 1.08992 * 109.48151 * 297.62019 * 23 22 17 44 44 H 1.09004 * 109.48943 * 177.59616 * 23 22 17 45 45 H 1.08992 * 109.48015 * 301.17731 * 25 24 23 46 46 H 1.09003 * 109.48809 * 181.14739 * 25 24 23 47 47 H 1.09002 * 109.52089 * 182.48258 * 26 25 24 48 48 H 1.08994 * 109.57318 * 62.32593 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1266 -3.6175 9 14 5.9138 2.0976 -3.4163 10 1 5.9778 0.8768 -4.2594 11 1 6.3928 3.2653 -4.1988 12 1 6.7737 1.9177 -2.2190 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3091 2.2065 3.5889 17 6 2.0536 1.5541 4.8801 18 6 2.8138 0.2279 4.9427 19 6 4.2788 0.4762 4.6912 20 8 4.6911 1.6074 4.5892 21 8 5.1258 -0.5592 4.5805 22 6 2.5205 2.4666 6.0184 23 6 1.6997 3.7587 5.9955 24 8 0.3111 3.4415 6.1113 25 6 -0.1924 2.6295 5.0487 26 6 0.5523 1.2920 5.0336 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6877 -2.0283 33 1 2.0955 3.1410 -1.1384 34 1 3.6755 3.5171 -4.4434 35 1 2.6213 0.4188 2.5302 36 1 0.9432 1.0125 2.5299 37 1 3.2622 2.5323 3.5306 38 1 2.6851 -0.2185 5.9287 39 1 2.4247 -0.4501 4.1832 40 1 6.0560 -0.3502 4.4189 41 1 2.3766 1.9606 6.9731 42 1 3.5762 2.7033 5.8860 43 1 1.8754 4.2844 5.0571 44 1 1.9982 4.3940 6.8295 45 1 -0.0414 3.1404 4.0979 46 1 -1.2570 2.4511 5.2005 47 1 0.2005 0.6886 4.1968 48 1 0.3689 0.7613 5.9678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829692722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:50 Heat of formation + Delta-G solvation = -165.790365 kcal Electronic energy + Delta-G solvation = -30502.835473 eV Core-core repulsion = 26365.077051 eV Total energy + Delta-G solvation = -4137.758422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22235 -39.51007 -38.83669 -36.76381 -35.86756 -35.22377 -32.86746 -31.90315 -31.14011 -30.09301 -29.70560 -27.75719 -25.75101 -24.07346 -23.62321 -23.02435 -22.21041 -21.46993 -19.27556 -18.47253 -18.30789 -16.94855 -16.72390 -16.42081 -16.34827 -15.94099 -15.83738 -15.63472 -15.32104 -14.84646 -14.61867 -14.45796 -13.87974 -13.63614 -13.37084 -13.23122 -12.91925 -12.86150 -12.52899 -12.50517 -12.25405 -12.14491 -11.91763 -11.83123 -11.72125 -11.42417 -11.36691 -11.18169 -11.01057 -10.91203 -10.76592 -10.54148 -10.38015 -10.19049 -10.13014 -9.63427 -9.56502 -8.90731 -8.43403 -8.31927 -7.64465 -6.04104 -4.08775 1.92260 2.75093 3.28852 3.35770 3.38805 3.45911 3.70078 3.94150 4.17673 4.38537 4.41948 4.47991 4.69331 4.94264 5.01125 5.05700 5.08269 5.13234 5.22178 5.28586 5.30403 5.37094 5.41875 5.44631 5.58267 5.61269 5.65875 5.69688 5.78703 5.84914 5.94418 5.98621 5.99996 6.14726 6.20874 6.30525 6.45628 6.88090 7.13347 7.26238 7.45049 7.48198 7.56713 7.68868 7.92611 8.24233 8.44674 8.91000 9.13590 9.56333 11.03920 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.003814 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.159797 B = 7339.967880 C = 8009.529675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.525 6.525 15 C 0.034 3.966 16 N -0.660 5.660 17 C 0.128 3.872 18 C -0.150 4.150 19 C 0.477 3.523 20 O -0.503 6.503 21 O -0.517 6.517 22 C -0.152 4.152 23 C 0.068 3.932 24 O -0.388 6.388 25 C 0.069 3.931 26 C -0.140 4.140 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.369 0.631 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.412 0.588 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -10.048 19.568 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.400 6.400 15 C -0.098 4.098 16 N -0.298 5.298 17 C 0.036 3.964 18 C -0.190 4.190 19 C 0.319 3.681 20 O -0.391 6.391 21 O -0.330 6.330 22 C -0.190 4.190 23 C -0.009 4.009 24 O -0.307 6.307 25 C -0.008 4.008 26 C -0.178 4.178 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.195 0.805 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.272 0.728 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.860 -8.686 19.538 22.170 hybrid contribution 2.587 -1.090 -0.799 2.919 sum -3.273 -9.775 18.738 21.387 Atomic orbital electron populations 1.22226 0.96747 1.01338 1.02422 1.21391 0.93552 0.84391 1.02412 1.48244 1.64170 1.13123 1.07703 1.19241 0.96132 0.93682 0.78081 1.21419 0.96961 1.31848 1.06209 0.92695 1.24926 0.97778 0.94918 0.96433 1.69930 1.35667 1.33393 1.14310 0.86515 0.84779 0.77675 0.78541 1.20668 1.21045 1.20013 1.20120 0.79016 0.87121 0.84769 1.90687 1.44778 1.17710 1.86863 1.22017 1.02117 0.94606 0.91100 1.60362 1.34102 1.36661 0.98643 1.20848 0.94478 0.89732 0.91353 1.22318 0.87861 1.02842 1.05933 1.23500 0.89762 0.82566 0.72241 1.90663 1.78765 1.23853 1.45778 1.84512 1.24442 1.40231 1.83784 1.22440 1.02497 0.97358 0.96689 1.22470 0.80576 0.95317 1.02487 1.87851 1.24742 1.70465 1.47624 1.22439 0.96832 0.89836 0.91698 1.22233 0.93534 0.99470 1.02559 0.93068 0.91936 0.92224 0.89990 0.92196 0.95079 0.93882 0.92725 0.93586 0.88565 0.80523 0.87018 0.87346 0.72827 0.91178 0.88762 0.91414 0.89589 0.91381 0.89544 0.90614 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.51 2.46 -175.06 -0.43 -12.94 16 4 C 0.25 6.49 5.16 -5.20 -0.03 6.46 16 5 C -0.53 -14.97 9.39 -34.44 -0.32 -15.30 16 6 H 0.05 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.50 10.46 7.71 -10.99 -0.08 10.38 16 14 O -0.52 -13.45 15.80 5.55 0.09 -13.36 16 15 C 0.03 0.49 3.85 -4.97 -0.02 0.47 16 16 N -0.66 -9.47 4.35 -101.04 -0.44 -9.91 16 17 C 0.13 1.35 0.28 -131.42 -0.04 1.31 16 18 C -0.15 -1.31 4.30 -27.89 -0.12 -1.43 16 19 C 0.48 5.23 7.49 36.01 0.27 5.49 16 20 O -0.50 -7.05 12.44 -18.75 -0.23 -7.28 16 21 O -0.52 -4.70 13.42 -39.25 -0.53 -5.23 16 22 C -0.15 -1.63 4.72 -26.59 -0.13 -1.75 16 23 C 0.07 0.80 6.68 37.21 0.25 1.05 16 24 O -0.39 -4.86 10.77 -35.23 -0.38 -5.24 16 25 C 0.07 0.75 6.68 37.21 0.25 1.00 16 26 C -0.14 -1.27 4.78 -26.59 -0.13 -1.40 16 27 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.61 5.36 -51.93 -0.28 0.33 16 36 H 0.10 1.18 5.41 -51.93 -0.28 0.90 16 37 H 0.37 6.30 5.86 -39.29 -0.23 6.07 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.85 6.62 -51.93 -0.34 0.51 16 40 H 0.41 2.40 9.10 45.56 0.41 2.81 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.14 5.79 -51.93 -0.30 0.84 16 43 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.62 6.40 -51.93 -0.33 0.28 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -35.62 376.44 -6.96 -42.58 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.59 Total: 6.86 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 0.16 Total: 7.83 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.13 Total: -48.84 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.05 Total: -31.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.62 -6.96 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.208 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds