Wall clock time and date at job start Tue Mar 31 2020 15:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52999 * 109.47524 * 239.99612 * 2 1 3 5 5 O 1.45203 * 109.47101 * 119.99536 * 2 1 3 6 6 C 1.34636 * 116.99909 * 60.00134 * 5 2 1 7 7 O 1.21509 * 120.00106 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00070 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.53002 * 109.46799 * 205.00309 * 9 8 6 12 12 C 1.52997 * 109.47469 * 65.00172 * 11 9 8 13 13 C 1.50699 * 109.47339 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99742 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99999 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00224 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00088 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46828 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47218 * 119.99677 * 17 15 13 20 20 H 1.48499 * 109.47069 * 239.99894 * 17 15 13 21 21 C 1.50701 * 109.46992 * 85.00222 * 9 8 6 22 22 O 1.21280 * 119.99781 * 0.02562 * 21 9 8 23 23 N 1.34780 * 119.99795 * 179.97438 * 21 9 8 24 24 C 1.47669 * 127.01295 * 180.02562 * 23 21 9 25 25 C 1.54452 * 104.74602 * 181.01702 * 24 23 21 26 26 O 1.44693 * 103.56925 * 22.62193 * 25 24 23 27 27 C 1.44606 * 103.84265 * 321.79341 * 26 25 24 28 28 H 1.09001 * 109.47288 * 299.99905 * 1 2 3 29 29 H 1.08997 * 109.47246 * 60.00117 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47317 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47032 * 299.99708 * 3 2 1 33 33 H 1.09001 * 109.47629 * 59.99553 * 3 2 1 34 34 H 1.09002 * 109.47054 * 300.00242 * 4 2 1 35 35 H 1.08997 * 109.46638 * 59.99899 * 4 2 1 36 36 H 1.09003 * 109.47318 * 179.97438 * 4 2 1 37 37 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 38 38 H 1.09008 * 109.46873 * 185.00266 * 11 9 8 39 39 H 1.08997 * 109.47047 * 304.99955 * 11 9 8 40 40 H 1.08997 * 109.47151 * 300.00410 * 12 11 9 41 41 H 1.09006 * 109.46918 * 59.99351 * 12 11 9 42 42 H 0.96998 * 120.00384 * 179.97438 * 16 15 13 43 43 H 1.08994 * 110.38547 * 299.83001 * 24 23 21 44 44 H 1.08992 * 110.38288 * 62.20243 * 24 23 21 45 45 H 1.08993 * 110.60314 * 141.14251 * 25 24 23 46 46 H 1.08999 * 110.60221 * 264.09697 * 25 24 23 47 47 H 1.08994 * 110.34625 * 280.95397 * 27 26 25 48 48 H 1.09004 * 110.16905 * 158.99631 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4169 9 6 1.6739 -4.0667 2.5834 10 1 0.6645 -4.2086 2.1972 11 6 1.7079 -4.4329 4.0686 12 6 0.6484 -3.6226 4.8181 13 6 0.6815 -3.9838 6.2808 14 1 1.3874 -4.7182 6.6398 15 6 -0.1899 -3.3775 7.1605 16 7 -1.0498 -2.4836 6.7232 17 14 -0.1484 -3.8246 8.9737 18 1 0.9020 -4.8481 9.2072 19 1 0.1542 -2.6121 9.7758 20 1 -1.4688 -4.3697 9.3795 21 6 2.6305 -4.9510 1.8259 22 8 3.5511 -4.4593 1.2081 23 7 2.4636 -6.2884 1.8357 24 6 3.3024 -7.2940 1.1533 25 6 2.6391 -8.6491 1.4841 26 8 1.2755 -8.2895 1.8081 27 6 1.4090 -7.0471 2.5360 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1391 36 1 3.1301 -0.7209 -1.2493 37 1 2.6276 -2.2366 3.0830 38 1 1.5015 -5.4969 4.1853 39 1 2.6934 -4.2072 4.4759 40 1 0.8548 -2.5588 4.7014 41 1 -0.3371 -3.8483 4.4106 42 1 -1.6632 -2.0573 7.3420 43 1 3.2999 -7.1231 0.0768 44 1 4.3206 -7.2652 1.5409 45 1 2.6659 -9.3107 0.6184 46 1 3.1264 -9.1158 2.3401 47 1 1.7063 -7.2417 3.5664 48 1 0.4694 -6.4950 2.5125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854808445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:34 Heat of formation + Delta-G solvation = -155.375758 kcal Electronic energy + Delta-G solvation = -29830.425705 eV Core-core repulsion = 25693.118894 eV Total energy + Delta-G solvation = -4137.306811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79509 -40.21145 -38.59651 -36.99418 -35.35481 -34.05690 -33.77750 -33.09179 -31.29016 -30.12827 -27.59092 -27.35627 -27.27515 -25.56522 -23.99011 -23.16902 -22.03811 -20.74168 -19.84055 -19.70203 -18.03458 -17.42617 -17.05714 -16.44689 -16.24467 -15.93466 -15.67190 -15.39420 -15.12604 -14.54015 -14.47067 -14.31241 -14.16564 -14.00196 -13.53351 -13.34959 -12.95580 -12.67842 -12.47332 -12.44759 -12.25806 -12.10558 -11.90133 -11.80767 -11.75713 -11.69822 -11.37613 -11.18825 -11.03955 -10.94085 -10.70727 -10.33977 -10.24902 -10.17068 -10.04705 -9.78526 -9.62004 -9.23374 -8.85692 -8.75257 -8.45020 -6.09676 -4.13891 2.30515 2.67703 2.81784 3.25366 3.25826 3.33927 3.36356 3.69029 4.35838 4.36420 4.46685 4.57644 4.75139 4.79735 4.84249 4.98333 4.99658 5.18678 5.23616 5.27035 5.34652 5.40404 5.47401 5.49469 5.57221 5.58594 5.70249 5.72777 5.77918 5.82521 5.94889 6.00595 6.02965 6.29810 6.35703 6.40351 6.49592 6.58873 6.72071 6.76550 7.35726 7.52276 7.59622 7.72620 7.87067 8.14966 8.25749 8.69224 8.92576 9.51499 11.01082 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.007004 B = 0.004999 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3996.800549 B = 5600.308634 C = 8983.375873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.662 3.338 7 O -0.574 6.574 8 N -0.678 5.678 9 C 0.153 3.847 10 H 0.117 0.883 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.532 3.468 22 O -0.529 6.529 23 N -0.640 5.640 24 C 0.075 3.925 25 C 0.038 3.962 26 O -0.367 6.367 27 C 0.258 3.742 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 -2.962 -12.675 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.415 3.585 7 O -0.464 6.464 8 N -0.335 5.335 9 C 0.045 3.955 10 H 0.134 0.866 11 C -0.159 4.159 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.320 3.680 22 O -0.404 6.404 23 N -0.383 5.383 24 C -0.048 4.048 25 C -0.039 4.039 26 O -0.283 6.283 27 C 0.097 3.903 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.640 -2.781 -13.468 15.271 hybrid contribution 0.355 0.044 1.296 1.345 sum 6.994 -2.737 -12.172 14.303 Atomic orbital electron populations 1.22519 0.93987 1.05257 1.02346 1.22009 0.94411 0.91385 0.82229 1.21850 1.02118 0.92764 1.02990 1.22498 1.01473 1.03574 0.96331 1.86296 1.71445 1.23753 1.46183 1.17914 0.78373 0.80297 0.81878 1.90852 1.41678 1.70581 1.43248 1.44187 1.55272 1.10574 1.23510 1.21032 0.97565 0.78565 0.98386 0.86555 1.22166 1.03203 1.02122 0.88445 1.19116 0.92483 0.95245 0.94380 1.21178 1.18902 1.23674 0.92653 0.92491 1.24999 0.95334 0.94952 0.98876 1.69969 1.20993 1.26955 1.34968 0.86550 0.77913 0.78334 0.85277 1.19718 1.21007 1.20974 1.21132 0.86195 0.80055 0.80626 1.90679 1.33064 1.73111 1.43524 1.49269 1.31026 1.05826 1.52210 1.22726 0.95706 0.87441 0.98949 1.23780 0.82495 0.95851 1.01771 1.89453 1.25024 1.38391 1.75425 1.23738 0.92817 0.81269 0.92465 0.91911 0.91471 0.89254 0.91602 0.90385 0.91352 0.89345 0.91500 0.92314 0.75133 0.90580 0.91580 0.95789 0.96132 0.92902 0.90409 0.90122 0.87655 0.90748 0.89839 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.37 37.15 0.31 -2.21 16 2 C 0.14 1.90 1.13 -90.62 -0.10 1.79 16 3 C -0.14 -1.49 8.85 37.16 0.33 -1.16 16 4 C -0.18 -2.43 8.37 37.16 0.31 -2.12 16 5 O -0.36 -6.12 9.94 -40.31 -0.40 -6.52 16 6 C 0.66 12.31 7.89 54.06 0.43 12.74 16 7 O -0.57 -11.42 11.54 -19.28 -0.22 -11.64 16 8 N -0.68 -12.06 4.06 -59.86 -0.24 -12.30 16 9 C 0.15 2.63 1.77 -69.08 -0.12 2.51 16 10 H 0.12 2.08 7.38 -51.93 -0.38 1.69 16 11 C -0.12 -2.16 4.57 -26.73 -0.12 -2.28 16 12 C 0.02 0.57 4.86 -27.89 -0.14 0.44 16 13 C -0.53 -13.61 9.11 -34.44 -0.31 -13.93 16 14 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 17 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.53 9.10 7.28 -10.98 -0.08 9.02 16 22 O -0.53 -10.52 16.72 5.56 0.09 -10.43 16 23 N -0.64 -9.08 3.39 -175.63 -0.60 -9.67 16 24 C 0.07 0.84 7.28 -2.64 -0.02 0.82 16 25 C 0.04 0.34 7.74 37.92 0.29 0.64 16 26 O -0.37 -4.54 11.80 -35.23 -0.42 -4.95 16 27 C 0.26 3.24 6.01 60.44 0.36 3.61 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 6.88 8.71 -40.82 -0.36 6.52 16 38 H 0.08 1.23 5.00 -51.92 -0.26 0.97 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.59 7.75 -51.93 -0.40 0.19 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.96 7.11 -51.93 -0.37 0.59 16 48 H 0.11 1.39 7.53 -51.93 -0.39 1.00 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -33.17 387.44 -7.00 -40.17 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.81 Total: 7.31 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 1.04 Total: 11.40 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.10 Total: -46.74 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.95 Total: -33.54 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.17 -7.00 -40.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854808445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.210 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds