Wall clock time and date at job start Tue Mar 31 2020 15:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46972 * 2 1 4 4 N 1.46896 * 109.47270 * 120.00385 * 2 1 3 5 5 C 1.46897 * 110.99933 * 275.00002 * 4 2 1 6 6 C 1.53009 * 109.46887 * 179.97438 * 5 4 2 7 7 N 1.46897 * 109.46794 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00158 * 298.62771 * 7 6 5 9 9 C 1.46904 * 111.00057 * 174.68047 * 7 6 5 10 10 C 1.53006 * 109.46656 * 283.12909 * 9 7 6 11 11 F 1.39899 * 109.46865 * 305.73928 * 10 9 7 12 12 F 1.39902 * 109.47056 * 65.73487 * 10 9 7 13 13 C 1.50702 * 109.47328 * 240.00883 * 2 1 3 14 14 C 1.38307 * 119.92600 * 279.72723 * 13 2 1 15 15 C 1.38097 * 120.06409 * 179.72664 * 14 13 2 16 16 C 1.38877 * 119.93461 * 0.54028 * 15 14 13 17 17 O 1.35756 * 120.07291 * 179.74906 * 16 15 14 18 18 C 1.34828 * 117.00046 * 174.39229 * 17 16 15 19 19 H 1.08004 * 119.99808 * 5.06311 * 18 17 16 20 20 C 1.38654 * 120.00064 * 185.06586 * 18 17 16 21 21 N 1.31565 * 119.99545 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46826 * 90.00029 * 22 20 18 24 24 H 1.48502 * 109.47310 * 209.99740 * 22 20 18 25 25 H 1.48491 * 109.47363 * 330.00060 * 22 20 18 26 26 C 1.38886 * 119.86134 * 359.72997 * 16 15 14 27 27 C 1.38093 * 119.92866 * 0.02562 * 26 16 15 28 28 H 1.08996 * 109.46900 * 59.99753 * 1 2 3 29 29 H 1.08999 * 109.46550 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47175 * 299.99348 * 1 2 3 31 31 H 1.00900 * 110.99792 * 38.95895 * 4 2 1 32 32 H 1.08997 * 109.47401 * 300.00189 * 5 4 2 33 33 H 1.09001 * 109.46954 * 60.00302 * 5 4 2 34 34 H 1.09003 * 109.47100 * 300.00034 * 6 5 4 35 35 H 1.09001 * 109.46978 * 60.00438 * 6 5 4 36 36 H 1.09007 * 109.47059 * 65.24958 * 8 7 6 37 37 H 1.08995 * 109.47677 * 185.25284 * 8 7 6 38 38 H 1.09008 * 109.46957 * 305.25397 * 8 7 6 39 39 H 1.09001 * 109.46918 * 43.12137 * 9 7 6 40 40 H 1.08990 * 109.47448 * 163.12662 * 9 7 6 41 41 H 1.08997 * 109.46862 * 185.74011 * 10 9 7 42 42 H 1.07994 * 119.96375 * 359.97438 * 14 13 2 43 43 H 1.08007 * 120.03465 * 180.27006 * 15 14 13 44 44 H 0.96996 * 119.99419 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.03622 * 179.97438 * 26 16 15 46 46 H 1.08006 * 119.96670 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5951 -0.5335 3.5744 7 7 2.6574 0.3814 4.7220 8 6 3.5867 1.4891 4.4625 9 6 3.0250 -0.3376 5.9492 10 6 1.8110 -1.1084 6.4717 11 9 0.7324 -0.2307 6.6256 12 9 1.4685 -2.1128 5.5601 13 6 2.0324 -0.7102 -1.2306 14 6 2.0715 -2.0924 -1.2619 15 6 2.5260 -2.7462 -2.3902 16 6 2.9547 -2.0144 -3.4898 17 8 3.4068 -2.6542 -4.5985 18 6 3.6976 -1.8899 -5.6705 19 1 3.6457 -0.8137 -5.5965 20 6 4.0631 -2.4856 -6.8680 21 7 4.1267 -3.7966 -6.9580 22 14 4.4651 -1.4268 -8.3535 23 1 5.9155 -1.1079 -8.3560 24 1 4.1182 -2.1637 -9.5952 25 1 3.6815 -0.1671 -8.2902 26 6 2.9195 -0.6264 -3.4532 27 6 2.4591 0.0215 -2.3239 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.4497 -1.4980 1.4098 32 1 2.7588 1.0461 2.1182 33 1 1.0871 0.6161 2.5525 34 1 1.9184 -1.3569 3.8028 35 1 3.5905 -0.9274 3.3690 36 1 3.2027 2.1022 3.6471 37 1 3.6850 2.0990 5.3605 38 1 4.5622 1.0880 4.1872 39 1 3.8332 -1.0363 5.7326 40 1 3.3545 0.3764 6.7038 41 1 2.0533 -1.5585 7.4344 42 1 1.7425 -2.6608 -0.4047 43 1 2.5522 -3.8257 -2.4157 44 1 4.3827 -4.2133 -7.7956 45 1 3.2525 -0.0545 -4.3066 46 1 2.4311 1.1008 -2.2949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858596771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:51 Heat of formation + Delta-G solvation = -97.232508 kcal Electronic energy + Delta-G solvation = -27369.937902 eV Core-core repulsion = 23124.064856 eV Total energy + Delta-G solvation = -4245.873046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.20307 -47.19800 -39.18486 -38.34333 -37.26663 -35.44249 -32.35770 -31.71107 -30.19902 -29.97168 -28.05306 -27.58518 -25.40798 -25.29187 -22.95586 -22.42362 -21.73161 -21.12476 -19.95307 -17.97539 -17.86993 -17.64260 -16.96225 -16.88181 -15.91427 -15.67896 -15.34059 -14.74270 -14.64867 -14.40952 -14.21913 -14.09442 -13.85610 -13.63538 -13.54833 -13.48584 -13.11219 -12.88390 -12.84705 -12.65304 -12.61922 -12.38968 -12.16681 -12.06646 -11.81588 -11.63760 -11.46362 -11.28536 -11.12600 -10.76893 -10.61686 -10.55489 -10.36820 -10.35004 -9.26961 -8.82244 -8.77996 -8.32498 -8.08300 -7.08219 -6.40329 -3.98965 2.30500 2.40081 3.14981 3.15923 3.20702 3.21993 3.52013 3.88694 4.00418 4.09671 4.30471 4.57390 4.67685 4.72205 4.86834 4.97236 5.05585 5.09010 5.14073 5.17686 5.21978 5.37071 5.38026 5.45277 5.48458 5.59206 5.70872 5.75390 5.79074 5.84641 5.95019 6.03903 6.22372 6.29845 6.47428 6.48729 6.56700 6.78610 6.92674 7.07851 7.13783 7.36641 7.44335 7.49502 7.52425 7.90811 8.05157 9.05569 9.77404 10.78004 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.001943 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.221211 B =14403.672081 C =14581.500803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.144 3.856 3 H 0.074 0.926 4 N -0.680 5.680 5 C 0.064 3.936 6 C 0.040 3.960 7 N -0.537 5.537 8 C 0.022 3.978 9 C 0.001 3.999 10 C 0.269 3.731 11 F -0.197 7.197 12 F -0.203 7.203 13 C -0.166 4.166 14 C -0.053 4.053 15 C -0.194 4.194 16 C 0.153 3.847 17 O -0.181 6.181 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.233 4.233 27 C -0.069 4.069 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.339 0.661 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.269 0.731 45 H 0.125 0.875 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 8.687 25.906 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.092 0.908 4 N -0.311 5.311 5 C -0.066 4.066 6 C -0.088 4.088 7 N -0.262 5.262 8 C -0.126 4.126 9 C -0.129 4.129 10 C 0.215 3.785 11 F -0.178 7.178 12 F -0.185 7.185 13 C -0.167 4.167 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.099 3.901 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.252 4.252 27 C -0.087 4.087 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.158 0.842 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.098 8.561 25.557 27.130 hybrid contribution 0.035 0.342 -0.744 0.820 sum -3.063 8.903 24.812 26.538 Atomic orbital electron populations 1.22491 0.97182 1.02221 1.01591 1.20159 0.91883 0.96587 0.87962 0.90772 1.60553 1.57918 1.09479 1.03120 1.21896 0.99798 0.95459 0.89447 1.22479 1.01597 0.95395 0.89304 1.61914 1.50454 1.11238 1.02553 1.22474 0.93970 0.93704 1.02417 1.23254 0.95407 0.99142 0.95057 1.21977 0.84285 0.80121 0.92160 1.92999 1.58378 1.70236 1.96182 1.92925 1.93500 1.62131 1.69931 1.19082 1.09051 0.93564 0.95036 1.20314 0.97655 0.93407 0.95777 1.20211 1.08423 0.99296 0.93431 1.19392 0.91300 0.90924 0.88442 1.83980 1.71039 1.35260 1.18146 1.21308 1.47234 0.90724 0.87389 0.89167 1.25278 0.96937 0.96286 0.98119 1.70045 1.44474 1.08625 1.26836 0.85724 0.78953 0.79062 0.79749 1.19940 1.20308 1.19254 1.21101 1.09773 0.94401 0.99974 1.20535 0.97347 0.98049 0.92794 0.91866 0.92334 0.93297 0.84233 0.91207 0.94576 0.89070 0.93533 0.90534 0.91401 0.94996 0.91303 0.87909 0.87162 0.87340 0.86737 0.92117 0.85718 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.14 37.16 0.34 -1.78 16 2 C 0.14 1.93 2.79 -68.86 -0.19 1.74 16 3 H 0.07 0.98 7.66 -51.93 -0.40 0.58 16 4 N -0.68 -8.41 5.70 -107.95 -0.61 -9.02 16 5 C 0.06 0.68 5.28 -3.82 -0.02 0.66 16 6 C 0.04 0.39 5.00 -3.82 -0.02 0.37 16 7 N -0.54 -4.51 4.55 -242.90 -1.10 -5.61 16 8 C 0.02 0.16 9.11 60.07 0.55 0.70 16 9 C 0.00 0.01 5.38 -3.82 -0.02 -0.01 16 10 C 0.27 1.74 5.59 37.16 0.21 1.95 16 11 F -0.20 -1.84 17.15 2.25 0.04 -1.81 16 12 F -0.20 -1.86 14.69 2.25 0.03 -1.82 16 13 C -0.17 -2.85 4.96 -104.57 -0.52 -3.37 16 14 C -0.05 -0.96 9.32 -39.61 -0.37 -1.33 16 15 C -0.19 -4.21 9.99 -39.40 -0.39 -4.60 16 16 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 17 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 18 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 19 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 20 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 21 N -0.86 -25.71 13.67 55.48 0.76 -24.96 16 22 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C -0.23 -5.17 9.17 -39.39 -0.36 -5.53 16 27 C -0.07 -1.28 9.66 -39.61 -0.38 -1.66 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 31 H 0.34 3.97 7.81 -39.29 -0.31 3.67 16 32 H 0.07 0.75 6.46 -51.93 -0.34 0.41 16 33 H 0.04 0.40 7.44 -51.93 -0.39 0.01 16 34 H 0.09 0.95 5.49 -51.93 -0.28 0.66 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.57 6.62 -51.93 -0.34 0.23 16 37 H 0.07 0.38 7.84 -51.93 -0.41 -0.03 16 38 H 0.03 0.23 8.13 -51.92 -0.42 -0.20 16 39 H 0.07 0.36 7.98 -51.93 -0.41 -0.05 16 40 H 0.10 0.40 7.72 -51.93 -0.40 0.00 16 41 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.11 1.69 7.23 -52.49 -0.38 1.31 16 43 H 0.11 2.41 8.06 -52.48 -0.42 1.99 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 46 H 0.10 1.65 8.03 -52.48 -0.42 1.22 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -32.31 379.03 -8.15 -40.47 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.71 Total: 5.70 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.25 Total: -19.19 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.96 Total: -39.59 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.31 -8.15 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858596771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.767 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds