Wall clock time and date at job start Tue Mar 31 2020 15:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46972 * 2 1 4 4 N 1.46896 * 109.47270 * 120.00385 * 2 1 3 5 5 C 1.46897 * 110.99933 * 275.00002 * 4 2 1 6 6 C 1.53009 * 109.46887 * 179.97438 * 5 4 2 7 7 N 1.46897 * 109.46794 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00158 * 298.62771 * 7 6 5 9 9 C 1.46904 * 111.00057 * 174.68047 * 7 6 5 10 10 C 1.53006 * 109.46656 * 283.12909 * 9 7 6 11 11 F 1.39899 * 109.46865 * 305.73928 * 10 9 7 12 12 F 1.39902 * 109.47056 * 65.73487 * 10 9 7 13 13 C 1.50702 * 109.47328 * 240.00883 * 2 1 3 14 14 C 1.38307 * 119.92600 * 279.72723 * 13 2 1 15 15 C 1.38097 * 120.06409 * 179.72664 * 14 13 2 16 16 C 1.38877 * 119.93461 * 0.54028 * 15 14 13 17 17 O 1.35756 * 120.07291 * 179.74906 * 16 15 14 18 18 C 1.34828 * 117.00046 * 174.39229 * 17 16 15 19 19 H 1.08004 * 119.99808 * 5.06311 * 18 17 16 20 20 C 1.38654 * 120.00064 * 185.06586 * 18 17 16 21 21 N 1.31565 * 119.99545 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46826 * 90.00029 * 22 20 18 24 24 H 1.48502 * 109.47310 * 209.99740 * 22 20 18 25 25 H 1.48491 * 109.47363 * 330.00060 * 22 20 18 26 26 C 1.38886 * 119.86134 * 359.72997 * 16 15 14 27 27 C 1.38093 * 119.92866 * 0.02562 * 26 16 15 28 28 H 1.08996 * 109.46900 * 59.99753 * 1 2 3 29 29 H 1.08999 * 109.46550 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47175 * 299.99348 * 1 2 3 31 31 H 1.00900 * 110.99792 * 38.95895 * 4 2 1 32 32 H 1.08997 * 109.47401 * 300.00189 * 5 4 2 33 33 H 1.09001 * 109.46954 * 60.00302 * 5 4 2 34 34 H 1.09003 * 109.47100 * 300.00034 * 6 5 4 35 35 H 1.09001 * 109.46978 * 60.00438 * 6 5 4 36 36 H 1.09007 * 109.47059 * 65.24958 * 8 7 6 37 37 H 1.08995 * 109.47677 * 185.25284 * 8 7 6 38 38 H 1.09008 * 109.46957 * 305.25397 * 8 7 6 39 39 H 1.09001 * 109.46918 * 43.12137 * 9 7 6 40 40 H 1.08990 * 109.47448 * 163.12662 * 9 7 6 41 41 H 1.08997 * 109.46862 * 185.74011 * 10 9 7 42 42 H 1.07994 * 119.96375 * 359.97438 * 14 13 2 43 43 H 1.08007 * 120.03465 * 180.27006 * 15 14 13 44 44 H 0.96996 * 119.99419 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.03622 * 179.97438 * 26 16 15 46 46 H 1.08006 * 119.96670 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5951 -0.5335 3.5744 7 7 2.6574 0.3814 4.7220 8 6 3.5867 1.4891 4.4625 9 6 3.0250 -0.3376 5.9492 10 6 1.8110 -1.1084 6.4717 11 9 0.7324 -0.2307 6.6256 12 9 1.4685 -2.1128 5.5601 13 6 2.0324 -0.7102 -1.2306 14 6 2.0715 -2.0924 -1.2619 15 6 2.5260 -2.7462 -2.3902 16 6 2.9547 -2.0144 -3.4898 17 8 3.4068 -2.6542 -4.5985 18 6 3.6976 -1.8899 -5.6705 19 1 3.6457 -0.8137 -5.5965 20 6 4.0631 -2.4856 -6.8680 21 7 4.1267 -3.7966 -6.9580 22 14 4.4651 -1.4268 -8.3535 23 1 5.9155 -1.1079 -8.3560 24 1 4.1182 -2.1637 -9.5952 25 1 3.6815 -0.1671 -8.2902 26 6 2.9195 -0.6264 -3.4532 27 6 2.4591 0.0215 -2.3239 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.4497 -1.4980 1.4098 32 1 2.7588 1.0461 2.1182 33 1 1.0871 0.6161 2.5525 34 1 1.9184 -1.3569 3.8028 35 1 3.5905 -0.9274 3.3690 36 1 3.2027 2.1022 3.6471 37 1 3.6850 2.0990 5.3605 38 1 4.5622 1.0880 4.1872 39 1 3.8332 -1.0363 5.7326 40 1 3.3545 0.3764 6.7038 41 1 2.0533 -1.5585 7.4344 42 1 1.7425 -2.6608 -0.4047 43 1 2.5522 -3.8257 -2.4157 44 1 4.3827 -4.2133 -7.7956 45 1 3.2525 -0.0545 -4.3066 46 1 2.4311 1.1008 -2.2949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858596771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:49 Heat of formation + Delta-G solvation = -119.004603 kcal Electronic energy + Delta-G solvation = -27370.882011 eV Core-core repulsion = 23124.064856 eV Total energy + Delta-G solvation = -4246.817155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.77432 -47.79442 -40.83513 -39.34646 -38.52055 -36.75163 -34.28451 -32.80378 -31.77001 -30.70780 -29.43377 -28.44121 -27.34398 -26.01046 -24.07317 -23.71570 -22.93623 -21.93295 -21.38746 -19.73746 -18.80971 -18.47984 -18.19942 -17.52851 -17.02584 -16.59214 -16.32808 -16.15561 -16.03516 -15.59855 -15.49502 -15.17714 -15.03867 -14.82898 -14.70507 -14.40031 -14.16476 -14.11783 -13.97151 -13.80183 -13.51376 -13.38312 -13.34315 -13.05204 -12.96045 -12.77638 -12.64447 -12.46035 -12.28599 -12.13977 -12.10585 -11.98929 -11.70384 -11.30434 -11.13709 -10.76860 -9.73009 -9.42873 -9.31143 -8.83731 -8.45558 -6.13425 0.64757 0.75275 1.34923 1.44560 1.52722 2.18780 2.61426 2.85327 3.05995 3.18454 3.43092 3.54439 3.56224 3.68170 3.94817 4.01204 4.10509 4.12400 4.19332 4.23364 4.37705 4.40112 4.48261 4.53476 4.60770 4.63621 4.65373 4.70195 4.73873 4.86730 4.87921 5.01227 5.05393 5.07922 5.13570 5.18759 5.28283 5.32843 5.62170 5.74729 5.79156 5.92595 5.93475 6.05302 6.18996 6.28924 6.49380 6.99220 7.81806 8.77983 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.001943 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.221211 B =14403.672081 C =14581.500803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.148 3.852 3 H 0.086 0.914 4 N -0.689 5.689 5 C 0.071 3.929 6 C 0.048 3.952 7 N -0.550 5.550 8 C 0.023 3.977 9 C -0.001 4.001 10 C 0.258 3.742 11 F -0.215 7.215 12 F -0.221 7.221 13 C -0.141 4.141 14 C -0.046 4.046 15 C -0.206 4.206 16 C 0.110 3.890 17 O -0.235 6.235 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.241 4.241 27 C -0.068 4.068 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.344 0.656 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.153 0.847 42 H 0.140 0.860 43 H 0.109 0.891 44 H 0.272 0.728 45 H 0.117 0.883 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 11.173 28.429 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 H 0.104 0.896 4 N -0.320 5.320 5 C -0.058 4.058 6 C -0.080 4.080 7 N -0.275 5.275 8 C -0.125 4.125 9 C -0.130 4.130 10 C 0.205 3.795 11 F -0.197 7.197 12 F -0.203 7.203 13 C -0.142 4.142 14 C -0.065 4.065 15 C -0.226 4.226 16 C 0.060 3.940 17 O -0.142 6.142 18 C -0.488 4.488 19 H 0.118 0.882 20 C -0.223 4.223 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.261 4.261 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.608 11.075 28.147 30.462 hybrid contribution 0.083 -0.348 -1.139 1.194 sum -3.525 10.726 27.008 29.273 Atomic orbital electron populations 1.22419 0.95612 1.02468 1.02445 1.20121 0.92904 0.96541 0.86632 0.89578 1.60463 1.58082 1.10029 1.03438 1.21847 0.99840 0.95115 0.89033 1.22324 1.00697 0.95359 0.89635 1.61914 1.51302 1.11482 1.02794 1.22494 0.93491 0.93424 1.03087 1.23390 0.95347 0.99706 0.94517 1.22555 0.83591 0.79763 0.93626 1.92957 1.59475 1.70958 1.96295 1.92886 1.93662 1.62890 1.70864 1.19634 1.05332 0.93301 0.95938 1.20656 0.96231 0.94267 0.95312 1.20456 1.08792 0.99381 0.93930 1.19929 0.93252 0.92487 0.88372 1.83941 1.73949 1.36750 1.19576 1.21810 1.47574 0.91416 0.88008 0.88202 1.26609 0.96531 0.97821 1.01325 1.70196 1.47031 1.10907 1.27963 0.84577 0.79189 0.77382 0.74989 1.18804 1.19597 1.17662 1.21206 1.10232 0.93455 1.01181 1.20911 0.96087 0.99942 0.91707 0.92034 0.92444 0.91494 0.83704 0.91128 0.94523 0.89788 0.94537 0.91110 0.89757 0.95193 0.90566 0.85593 0.83037 0.84222 0.87272 0.91914 0.86490 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 9.14 71.98 0.66 -2.84 16 2 C 0.15 3.46 2.79 44.17 0.12 3.58 16 3 H 0.09 1.90 7.66 -2.39 -0.02 1.88 16 4 N -0.69 -14.95 5.70 -495.44 -2.82 -17.77 16 5 C 0.07 1.31 5.28 86.31 0.46 1.77 16 6 C 0.05 0.83 5.00 86.31 0.43 1.26 16 7 N -0.55 -7.94 4.55 -922.40 -4.20 -12.14 16 8 C 0.02 0.27 9.11 127.69 1.16 1.43 16 9 C 0.00 -0.01 5.38 86.30 0.46 0.46 16 10 C 0.26 2.73 5.59 71.98 0.40 3.13 16 11 F -0.22 -3.63 17.15 44.97 0.77 -2.86 16 12 F -0.22 -3.69 14.69 44.97 0.66 -3.03 16 13 C -0.14 -4.48 4.96 -19.83 -0.10 -4.58 16 14 C -0.05 -1.62 9.32 22.25 0.21 -1.41 16 15 C -0.21 -9.15 9.99 22.39 0.22 -8.92 16 16 C 0.11 5.64 6.65 22.58 0.15 5.79 16 17 O -0.24 -14.58 9.76 -22.78 -0.22 -14.80 16 18 C -0.41 -24.56 9.49 67.92 0.64 -23.92 16 19 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 20 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 21 N -0.92 -57.76 13.67 21.61 0.30 -57.46 16 22 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 26 C -0.24 -10.82 9.17 22.39 0.21 -10.61 16 27 C -0.07 -2.40 9.66 22.25 0.21 -2.19 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.07 1.18 7.45 -2.39 -0.02 1.16 16 31 H 0.34 7.02 7.81 -89.69 -0.70 6.32 16 32 H 0.07 1.32 6.46 -2.39 -0.02 1.30 16 33 H 0.04 0.69 7.44 -2.39 -0.02 0.68 16 34 H 0.08 1.60 5.49 -2.39 -0.01 1.59 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.90 6.62 -2.38 -0.02 0.88 16 37 H 0.08 0.70 7.84 -2.39 -0.02 0.68 16 38 H 0.03 0.36 8.13 -2.38 -0.02 0.34 16 39 H 0.08 0.61 7.98 -2.39 -0.02 0.59 16 40 H 0.13 0.55 7.72 -2.39 -0.02 0.54 16 41 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.14 3.98 7.23 -2.91 -0.02 3.96 16 43 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 46 H 0.14 3.91 8.03 -2.91 -0.02 3.89 16 Total: -1.00 -75.14 379.03 2.53 -72.61 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.30 Total: 27.82 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 5.71 Total: -38.09 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -6.72 Total: -87.37 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.22 Total: -14.80 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.43 Total: -5.89 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -75.14 2.53 -72.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858596771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.392 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds