Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00235 * 2 1 4 4 H 1.08994 * 110.88324 * 29.29923 * 3 2 1 5 5 C 1.54905 * 111.00317 * 265.42004 * 3 2 1 6 6 N 1.47520 * 104.78432 * 204.89915 * 5 3 2 7 7 C 1.34775 * 125.64144 * 204.08205 * 6 5 3 8 8 O 1.21509 * 120.00639 * 185.07583 * 7 6 5 9 9 O 1.34642 * 119.99537 * 5.08079 * 7 6 5 10 10 C 1.45199 * 116.99777 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47360 * 59.99751 * 10 9 7 12 12 C 1.52996 * 109.47070 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47018 * 299.99956 * 10 9 7 14 14 C 1.47024 * 108.71389 * 24.12438 * 6 5 3 15 15 C 1.53004 * 109.88174 * 239.52656 * 14 6 5 16 16 C 1.50696 * 110.01418 * 118.43089 * 14 6 5 17 17 O 1.21293 * 120.00173 * 146.41122 * 16 14 6 18 18 N 1.34773 * 120.00228 * 326.40999 * 16 14 6 19 19 C 1.37101 * 120.00360 * 185.01303 * 18 16 14 20 20 H 1.07995 * 119.99459 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00154 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99744 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00251 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46818 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47156 * 119.99964 * 23 21 19 26 26 H 1.48495 * 109.47309 * 240.00774 * 23 21 19 27 27 C 1.54319 * 107.27193 * 358.93887 * 14 6 5 28 28 H 1.09009 * 109.46681 * 299.99773 * 1 2 3 29 29 H 1.08991 * 109.47370 * 59.99786 * 1 2 3 30 30 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.09002 * 110.37008 * 323.71764 * 5 3 2 32 32 H 1.09000 * 110.36801 * 86.03643 * 5 3 2 33 33 H 1.08999 * 109.46841 * 59.99708 * 11 10 9 34 34 H 1.08998 * 109.47321 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.46918 * 300.00360 * 11 10 9 36 36 H 1.08997 * 109.47455 * 59.99589 * 12 10 9 37 37 H 1.09004 * 109.47401 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47076 * 299.99175 * 12 10 9 39 39 H 1.08995 * 109.47534 * 60.00273 * 13 10 9 40 40 H 1.09004 * 109.46951 * 180.02562 * 13 10 9 41 41 H 1.09001 * 109.47494 * 299.99833 * 13 10 9 42 42 H 1.08999 * 109.47203 * 177.80720 * 15 14 6 43 43 H 1.09007 * 109.46470 * 297.80554 * 15 14 6 44 44 H 1.08992 * 109.47164 * 57.80221 * 15 14 6 45 45 H 0.97003 * 119.99592 * 5.00498 * 18 16 14 46 46 H 0.97000 * 119.99856 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.72582 * 219.44863 * 27 14 6 48 48 H 1.09002 * 110.72186 * 96.17064 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3570 2.0216 0.4983 5 6 2.3416 1.7657 -1.4415 6 7 3.4265 2.7525 -1.2816 7 6 3.7285 3.7356 -2.1527 8 8 4.7033 4.4361 -1.9642 9 8 2.9500 3.9415 -3.2317 10 6 3.3352 5.0181 -4.1266 11 6 4.7370 4.7473 -4.6766 12 6 2.3391 5.0994 -5.2850 13 6 3.3350 6.3426 -3.3607 14 6 4.1242 2.4854 -0.0154 15 6 4.0404 3.7130 0.8939 16 6 5.5673 2.1442 -0.2837 17 8 6.4255 2.4723 0.5082 18 7 5.9045 1.4746 -1.4037 19 6 7.2011 1.0741 -1.5989 20 1 7.9523 1.2956 -0.8553 21 6 7.5486 0.3833 -2.7533 22 7 6.6345 0.1143 -3.6583 23 14 9.3153 -0.1618 -3.0196 24 1 10.1436 0.2612 -1.8619 25 1 9.3632 -1.6404 -3.1479 26 1 9.8436 0.4602 -4.2602 27 6 3.4174 1.2877 0.6535 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.6821 0.9211 -2.0406 32 1 1.4695 2.2307 -1.9012 33 1 4.7372 3.8037 -5.2222 34 1 5.0263 5.5558 -5.3481 35 1 5.4464 4.6897 -3.8510 36 1 1.3406 5.2925 -4.8929 37 1 2.6279 5.9079 -5.9566 38 1 2.3389 4.1559 -5.8309 39 1 4.0443 6.2851 -2.5351 40 1 3.6237 7.1509 -4.0326 41 1 2.3363 6.5357 -2.9688 42 1 4.5256 3.4945 1.8451 43 1 4.5414 4.5545 0.4153 44 1 2.9944 3.9647 1.0690 45 1 5.2297 1.2759 -2.0716 46 1 6.8771 -0.3677 -4.4643 47 1 3.3441 1.4356 1.7309 48 1 3.9368 0.3569 0.4254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858981756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -151.518914 kcal Electronic energy + Delta-G solvation = -31278.784446 eV Core-core repulsion = 27141.644880 eV Total energy + Delta-G solvation = -4137.139566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80894 -39.46876 -37.89154 -36.77318 -35.69785 -34.02801 -33.78798 -31.30210 -31.07214 -30.28161 -27.30581 -27.12850 -26.58894 -26.00503 -25.03384 -23.44655 -21.70113 -21.13619 -19.59927 -18.51025 -18.03687 -17.30715 -16.84026 -16.46450 -15.89358 -15.62625 -15.09027 -14.89214 -14.57653 -14.41538 -14.15286 -14.03540 -13.83712 -13.50810 -13.31909 -13.04857 -12.77349 -12.56245 -12.38998 -12.11590 -11.95757 -11.85319 -11.74937 -11.66614 -11.59155 -11.46446 -11.27151 -11.15890 -11.11756 -11.05624 -10.88472 -10.73150 -10.30126 -10.16683 -10.08886 -9.80934 -9.50814 -9.44652 -8.92752 -8.01203 -7.89339 -6.36353 -3.75481 2.27052 3.19058 3.24997 3.29886 3.37697 3.50792 3.97091 4.18968 4.23504 4.49512 4.71833 4.88361 4.91635 4.93365 4.99547 5.07641 5.18065 5.25544 5.26652 5.32766 5.47541 5.54130 5.57501 5.64427 5.68741 5.76099 5.78135 5.87692 5.91372 5.93846 6.02389 6.03945 6.07659 6.14933 6.17669 6.40946 6.44886 6.56483 6.67237 6.69772 6.80177 7.11855 7.60097 7.77853 8.10850 8.65781 8.74228 9.22378 9.60264 10.10649 10.80927 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.008117 B = 0.006201 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.886818 B = 4514.675737 C = 6257.856783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.078 3.922 4 H 0.081 0.919 5 C 0.082 3.918 6 N -0.595 5.595 7 C 0.671 3.329 8 O -0.543 6.543 9 O -0.364 6.364 10 C 0.137 3.863 11 C -0.184 4.184 12 C -0.138 4.138 13 C -0.182 4.182 14 C 0.176 3.824 15 C -0.139 4.139 16 C 0.447 3.553 17 O -0.588 6.588 18 N -0.546 5.546 19 C -0.295 4.295 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.897 5.897 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.112 4.112 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.095 0.905 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.984 5.421 0.362 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.287 6.287 3 C 0.019 3.981 4 H 0.099 0.901 5 C -0.041 4.041 6 N -0.339 5.339 7 C 0.426 3.574 8 O -0.430 6.430 9 O -0.279 6.279 10 C 0.100 3.900 11 C -0.241 4.241 12 C -0.195 4.195 13 C -0.239 4.239 14 C 0.089 3.911 15 C -0.198 4.198 16 C 0.231 3.769 17 O -0.473 6.473 18 N -0.180 5.180 19 C -0.425 4.425 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.151 4.151 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.932 5.690 0.632 15.992 hybrid contribution 0.211 -0.212 -0.875 0.925 sum -14.721 5.478 -0.244 15.709 Atomic orbital electron populations 1.22830 0.81080 1.02882 0.99990 1.87986 1.19614 1.26371 1.94699 1.23250 0.94954 0.85084 0.94808 0.90145 1.22789 0.90501 0.92846 0.97970 1.47087 1.35187 1.30518 1.21109 1.17364 0.80913 0.80084 0.78990 1.90951 1.27858 1.48326 1.75842 1.86263 1.53450 1.53907 1.34287 1.22011 0.95718 0.84446 0.87787 1.22502 0.96359 1.02084 1.03136 1.21831 0.98499 1.03000 0.96177 1.22509 1.03100 0.95813 1.02459 1.21192 0.91793 0.95847 0.82268 1.21931 1.00793 0.97292 0.99749 1.19577 0.88553 0.84183 0.84602 1.90520 1.49840 1.58143 1.48765 1.41760 1.10611 1.48134 1.17479 1.19779 0.86109 1.31841 1.04792 0.87890 1.25263 0.99762 0.97363 0.95450 1.69637 1.33617 1.40786 1.09729 0.85815 0.82116 0.78074 0.78439 1.19188 1.20750 1.20789 1.22789 0.93423 0.98421 1.00436 0.93994 0.93879 0.89495 0.89705 0.90122 0.91790 0.91695 0.88928 0.91856 0.90414 0.91424 0.89235 0.91435 0.92575 0.90409 0.90756 0.92960 0.77476 0.92000 0.88681 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.87 101.05 1.10 1.36 16 2 O -0.37 -4.83 10.51 -35.23 -0.37 -5.20 16 3 C 0.08 1.02 3.51 -24.58 -0.09 0.94 16 4 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 5 C 0.08 1.23 6.69 -2.48 -0.02 1.21 16 6 N -0.59 -10.80 2.01 -162.69 -0.33 -11.13 16 7 C 0.67 13.17 7.43 54.05 0.40 13.58 16 8 O -0.54 -12.11 10.37 -19.28 -0.20 -12.31 16 9 O -0.36 -6.26 9.39 -40.33 -0.38 -6.64 16 10 C 0.14 2.03 1.13 -90.62 -0.10 1.92 16 11 C -0.18 -3.03 8.37 37.16 0.31 -2.72 16 12 C -0.14 -1.52 8.85 37.16 0.33 -1.20 16 13 C -0.18 -2.47 8.37 37.16 0.31 -2.16 16 14 C 0.18 3.37 0.77 -131.99 -0.10 3.27 16 15 C -0.14 -2.43 7.88 37.16 0.29 -2.14 16 16 C 0.45 11.27 5.66 -10.99 -0.06 11.21 16 17 O -0.59 -16.77 15.75 5.55 0.09 -16.68 16 18 N -0.55 -14.75 5.19 -10.97 -0.06 -14.81 16 19 C -0.30 -8.62 9.68 -14.93 -0.14 -8.76 16 20 H 0.10 3.14 7.17 -52.49 -0.38 2.77 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -25.15 13.05 55.50 0.72 -24.42 16 23 Si 0.93 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.11 -1.78 5.74 -24.90 -0.14 -1.93 16 28 H 0.04 0.31 8.11 -51.92 -0.42 -0.11 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.03 7.99 -51.93 -0.42 0.61 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.89 5.88 -51.93 -0.31 1.59 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.48 5.88 -51.93 -0.31 1.17 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 43 H 0.07 1.48 6.93 -51.93 -0.36 1.12 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.39 10.48 7.15 -40.82 -0.29 10.18 16 46 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.09 1.29 7.83 -51.93 -0.41 0.88 16 48 H 0.10 1.74 7.84 -51.93 -0.41 1.33 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -34.15 386.03 -5.63 -39.78 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -7.89 Total: 13.72 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 1.99 Total: 15.13 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.34 Total: -50.36 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.86 Total: -40.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.15 -5.63 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858981756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.737 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds