Wall clock time and date at job start Tue Mar 31 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00235 * 2 1 4 4 H 1.08994 * 110.88324 * 29.29923 * 3 2 1 5 5 C 1.54905 * 111.00317 * 265.42004 * 3 2 1 6 6 N 1.47520 * 104.78432 * 204.89915 * 5 3 2 7 7 C 1.34775 * 125.64144 * 204.08205 * 6 5 3 8 8 O 1.21509 * 120.00639 * 185.07583 * 7 6 5 9 9 O 1.34642 * 119.99537 * 5.08079 * 7 6 5 10 10 C 1.45199 * 116.99777 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47360 * 59.99751 * 10 9 7 12 12 C 1.52996 * 109.47070 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47018 * 299.99956 * 10 9 7 14 14 C 1.47024 * 108.71389 * 24.12438 * 6 5 3 15 15 C 1.53004 * 109.88174 * 239.52656 * 14 6 5 16 16 C 1.50696 * 110.01418 * 118.43089 * 14 6 5 17 17 O 1.21293 * 120.00173 * 146.41122 * 16 14 6 18 18 N 1.34773 * 120.00228 * 326.40999 * 16 14 6 19 19 C 1.37101 * 120.00360 * 185.01303 * 18 16 14 20 20 H 1.07995 * 119.99459 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00154 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99744 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00251 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46818 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47156 * 119.99964 * 23 21 19 26 26 H 1.48495 * 109.47309 * 240.00774 * 23 21 19 27 27 C 1.54319 * 107.27193 * 358.93887 * 14 6 5 28 28 H 1.09009 * 109.46681 * 299.99773 * 1 2 3 29 29 H 1.08991 * 109.47370 * 59.99786 * 1 2 3 30 30 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.09002 * 110.37008 * 323.71764 * 5 3 2 32 32 H 1.09000 * 110.36801 * 86.03643 * 5 3 2 33 33 H 1.08999 * 109.46841 * 59.99708 * 11 10 9 34 34 H 1.08998 * 109.47321 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.46918 * 300.00360 * 11 10 9 36 36 H 1.08997 * 109.47455 * 59.99589 * 12 10 9 37 37 H 1.09004 * 109.47401 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47076 * 299.99175 * 12 10 9 39 39 H 1.08995 * 109.47534 * 60.00273 * 13 10 9 40 40 H 1.09004 * 109.46951 * 180.02562 * 13 10 9 41 41 H 1.09001 * 109.47494 * 299.99833 * 13 10 9 42 42 H 1.08999 * 109.47203 * 177.80720 * 15 14 6 43 43 H 1.09007 * 109.46470 * 297.80554 * 15 14 6 44 44 H 1.08992 * 109.47164 * 57.80221 * 15 14 6 45 45 H 0.97003 * 119.99592 * 5.00498 * 18 16 14 46 46 H 0.97000 * 119.99856 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.72582 * 219.44863 * 27 14 6 48 48 H 1.09002 * 110.72186 * 96.17064 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3570 2.0216 0.4983 5 6 2.3416 1.7657 -1.4415 6 7 3.4265 2.7525 -1.2816 7 6 3.7285 3.7356 -2.1527 8 8 4.7033 4.4361 -1.9642 9 8 2.9500 3.9415 -3.2317 10 6 3.3352 5.0181 -4.1266 11 6 4.7370 4.7473 -4.6766 12 6 2.3391 5.0994 -5.2850 13 6 3.3350 6.3426 -3.3607 14 6 4.1242 2.4854 -0.0154 15 6 4.0404 3.7130 0.8939 16 6 5.5673 2.1442 -0.2837 17 8 6.4255 2.4723 0.5082 18 7 5.9045 1.4746 -1.4037 19 6 7.2011 1.0741 -1.5989 20 1 7.9523 1.2956 -0.8553 21 6 7.5486 0.3833 -2.7533 22 7 6.6345 0.1143 -3.6583 23 14 9.3153 -0.1618 -3.0196 24 1 10.1436 0.2612 -1.8619 25 1 9.3632 -1.6404 -3.1479 26 1 9.8436 0.4602 -4.2602 27 6 3.4174 1.2877 0.6535 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.6821 0.9211 -2.0406 32 1 1.4695 2.2307 -1.9012 33 1 4.7372 3.8037 -5.2222 34 1 5.0263 5.5558 -5.3481 35 1 5.4464 4.6897 -3.8510 36 1 1.3406 5.2925 -4.8929 37 1 2.6279 5.9079 -5.9566 38 1 2.3389 4.1559 -5.8309 39 1 4.0443 6.2851 -2.5351 40 1 3.6237 7.1509 -4.0326 41 1 2.3363 6.5357 -2.9688 42 1 4.5256 3.4945 1.8451 43 1 4.5414 4.5545 0.4153 44 1 2.9944 3.9647 1.0690 45 1 5.2297 1.2759 -2.0716 46 1 6.8771 -0.3677 -4.4643 47 1 3.3441 1.4356 1.7309 48 1 3.9368 0.3569 0.4254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858981756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:08 Heat of formation + Delta-G solvation = -175.984715 kcal Electronic energy + Delta-G solvation = -31279.845363 eV Core-core repulsion = 27141.644880 eV Total energy + Delta-G solvation = -4138.200483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27077 -40.90819 -39.37321 -38.20231 -37.10781 -36.11776 -35.11082 -33.26668 -32.68633 -31.52870 -28.37727 -28.27654 -27.71066 -27.36564 -26.72638 -24.94280 -23.11558 -22.54471 -20.98030 -20.32611 -19.84785 -19.01960 -18.02062 -17.83656 -17.21242 -17.09582 -16.67463 -16.23227 -15.96077 -15.85473 -15.63758 -15.42914 -15.30362 -15.04413 -14.71545 -14.45423 -14.31973 -13.88710 -13.68505 -13.35457 -13.30859 -13.11087 -13.06001 -12.94866 -12.89949 -12.84318 -12.67970 -12.55582 -12.45813 -12.45093 -12.38191 -12.20176 -12.15826 -11.84337 -11.57336 -11.37803 -11.09600 -10.68447 -10.58701 -10.06922 -9.74854 -8.51899 -6.00895 0.88503 1.31154 1.34615 1.50173 1.74738 1.93600 2.24376 2.59036 2.92546 3.09000 3.15849 3.43774 3.49656 3.76226 3.78666 3.81123 3.94991 3.99899 4.16741 4.29749 4.44490 4.48530 4.57218 4.59680 4.63351 4.67115 4.69348 4.73663 4.75878 4.77460 4.82745 4.83509 4.88910 4.89572 4.97689 5.10485 5.19014 5.25379 5.29666 5.33957 5.37457 5.44927 5.91030 6.24409 6.34151 6.51545 7.04646 7.26756 7.47351 8.00906 8.65397 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.008117 B = 0.006201 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3448.886818 B = 4514.675737 C = 6257.856783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.392 6.392 3 C 0.098 3.902 4 H 0.120 0.880 5 C 0.079 3.921 6 N -0.595 5.595 7 C 0.665 3.335 8 O -0.578 6.578 9 O -0.361 6.361 10 C 0.125 3.875 11 C -0.179 4.179 12 C -0.129 4.129 13 C -0.174 4.174 14 C 0.179 3.821 15 C -0.131 4.131 16 C 0.440 3.560 17 O -0.630 6.630 18 N -0.556 5.556 19 C -0.336 4.336 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.916 5.916 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.264 1.264 26 H -0.272 1.272 27 C -0.111 4.111 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.390 0.610 46 H 0.278 0.722 47 H 0.124 0.876 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 5.770 -0.191 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.310 6.310 3 C 0.039 3.961 4 H 0.138 0.862 5 C -0.044 4.044 6 N -0.339 5.339 7 C 0.421 3.579 8 O -0.467 6.467 9 O -0.276 6.276 10 C 0.089 3.911 11 C -0.236 4.236 12 C -0.186 4.186 13 C -0.231 4.231 14 C 0.092 3.908 15 C -0.189 4.189 16 C 0.226 3.774 17 O -0.517 6.517 18 N -0.190 5.190 19 C -0.466 4.466 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.189 1.189 26 H -0.197 1.197 27 C -0.149 4.149 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.223 0.777 46 H 0.087 0.913 47 H 0.142 0.858 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.883 6.018 0.058 18.868 hybrid contribution 1.098 -0.311 -0.744 1.362 sum -16.785 5.707 -0.686 17.742 Atomic orbital electron populations 1.23107 0.78680 1.04210 1.01583 1.87966 1.22218 1.26155 1.94682 1.23126 0.93820 0.86184 0.92927 0.86204 1.22999 0.90189 0.91560 0.99619 1.47137 1.35636 1.30569 1.20551 1.17622 0.80714 0.80092 0.79494 1.90949 1.29356 1.49766 1.76652 1.86278 1.52786 1.54907 1.33604 1.22449 0.95651 0.84329 0.88658 1.22441 0.97009 1.02430 1.01760 1.21852 0.98180 1.03890 0.94712 1.22430 1.03153 0.95869 1.01695 1.21119 0.88096 0.98106 0.83470 1.21890 1.03273 0.95038 0.98696 1.20790 0.91299 0.82172 0.83136 1.90469 1.52215 1.59220 1.49771 1.41807 1.09961 1.48946 1.18250 1.19748 0.86934 1.34324 1.05566 0.90432 1.26111 1.04075 0.96550 0.94481 1.69704 1.35354 1.40616 1.09976 0.84856 0.76720 0.78436 0.78214 1.19726 1.18860 1.19683 1.22776 0.94845 0.95268 1.02035 0.91900 0.92695 0.88489 0.92078 0.87143 0.93473 0.88718 0.93569 0.90054 0.87719 0.91840 0.92773 0.88919 0.90789 0.90402 0.93963 0.88424 0.77658 0.91272 0.85826 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.87 113.37 1.23 1.52 16 2 O -0.39 -9.30 10.51 -148.98 -1.57 -10.86 16 3 C 0.10 2.32 3.51 31.99 0.11 2.43 16 4 H 0.12 1.96 7.86 -2.39 -0.02 1.94 16 5 C 0.08 2.24 6.69 86.84 0.58 2.82 16 6 N -0.60 -21.69 2.01 -899.04 -1.80 -23.50 16 7 C 0.67 26.70 7.43 129.79 0.96 27.66 16 8 O -0.58 -27.24 10.37 19.81 0.21 -27.03 16 9 O -0.36 -12.29 9.39 -55.52 -0.52 -12.81 16 10 C 0.13 3.58 1.13 -10.79 -0.01 3.57 16 11 C -0.18 -6.05 8.37 71.98 0.60 -5.45 16 12 C -0.13 -2.48 8.85 71.98 0.64 -1.85 16 13 C -0.17 -4.52 8.37 71.98 0.60 -3.91 16 14 C 0.18 6.96 0.77 3.21 0.00 6.96 16 15 C -0.13 -4.51 7.88 71.98 0.57 -3.94 16 16 C 0.44 23.41 5.66 87.66 0.50 23.90 16 17 O -0.63 -38.09 15.75 -3.07 -0.05 -38.14 16 18 N -0.56 -31.88 5.19 -306.99 -1.59 -33.47 16 19 C -0.34 -20.75 9.68 84.04 0.81 -19.94 16 20 H 0.08 5.08 7.17 -2.91 -0.02 5.06 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -52.64 13.05 21.66 0.28 -52.36 16 23 Si 0.99 45.62 29.55 68.60 2.03 47.65 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C -0.11 -3.43 5.74 31.78 0.18 -3.25 16 28 H 0.06 0.66 8.11 -2.38 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 2.49 7.99 -2.39 -0.02 2.47 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 2.00 5.88 -2.39 -0.01 1.99 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.82 5.88 -2.39 -0.01 1.81 16 40 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.65 7.93 -2.39 -0.02 2.63 16 43 H 0.04 1.72 6.93 -2.38 -0.02 1.71 16 44 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.39 22.11 7.15 -92.71 -0.66 21.45 16 46 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 47 H 0.12 3.09 7.83 -2.39 -0.02 3.07 16 48 H 0.07 2.50 7.84 -2.39 -0.02 2.48 16 Total: -1.00 -81.39 386.03 4.53 -76.86 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: 0.29 Total: 43.37 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 7.25 Total: 30.29 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.11 Total: -109.33 kcal Atomic # 8 Polarization: -86.91 SS G_CDS: -1.93 Total: -88.84 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -81.39 4.53 -76.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858981756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.124 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds