Wall clock time and date at job start Tue Mar 31 2020 14:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00009 * 2 1 4 4 H 1.09001 * 110.88399 * 327.56737 * 3 2 1 5 5 C 1.54906 * 111.00985 * 91.45464 * 3 2 1 6 6 N 1.47420 * 104.83498 * 155.12242 * 5 3 2 7 7 C 1.34771 * 125.64848 * 155.83953 * 6 5 3 8 8 O 1.21515 * 120.00116 * 185.00227 * 7 6 5 9 9 O 1.34640 * 120.00219 * 4.99502 * 7 6 5 10 10 C 1.45198 * 117.00107 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47204 * 59.99868 * 10 9 7 12 12 C 1.53000 * 109.47042 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.47089 * 300.00345 * 10 9 7 14 14 C 1.47025 * 108.70317 * 335.86649 * 6 5 3 15 15 C 1.52997 * 109.87990 * 120.63285 * 14 6 5 16 16 C 1.50695 * 109.88468 * 241.64533 * 14 6 5 17 17 O 1.21296 * 119.99886 * 215.50173 * 16 14 6 18 18 N 1.34773 * 120.00151 * 35.50242 * 16 14 6 19 19 C 1.37101 * 120.00193 * 174.99862 * 18 16 14 20 20 H 1.07995 * 120.00163 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00187 * 180.27027 * 19 18 16 22 22 N 1.31419 * 119.99865 * 359.73022 * 21 19 18 23 23 Si 1.86802 * 120.00058 * 179.72393 * 21 19 18 24 24 H 1.48492 * 109.46767 * 60.00706 * 23 21 19 25 25 H 1.48506 * 109.46786 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47135 * 300.00117 * 23 21 19 27 27 C 1.54326 * 107.26926 * 1.06333 * 14 6 5 28 28 H 1.09000 * 109.47399 * 300.00413 * 1 2 3 29 29 H 1.08998 * 109.47005 * 60.00298 * 1 2 3 30 30 H 1.08997 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09007 * 110.36513 * 36.27887 * 5 3 2 32 32 H 1.09003 * 110.36347 * 273.96090 * 5 3 2 33 33 H 1.09000 * 109.46540 * 60.00498 * 11 10 9 34 34 H 1.08999 * 109.46951 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47371 * 300.00196 * 11 10 9 36 36 H 1.08995 * 109.47277 * 60.00012 * 12 10 9 37 37 H 1.09002 * 109.47018 * 180.02562 * 12 10 9 38 38 H 1.08999 * 109.47073 * 299.99569 * 12 10 9 39 39 H 1.08998 * 109.47243 * 59.99953 * 13 10 9 40 40 H 1.08999 * 109.46921 * 180.02562 * 13 10 9 41 41 H 1.09004 * 109.46874 * 299.99758 * 13 10 9 42 42 H 1.08998 * 109.47132 * 181.71634 * 15 14 6 43 43 H 1.09006 * 109.47216 * 301.72119 * 15 14 6 44 44 H 1.08999 * 109.47193 * 61.72029 * 15 14 6 45 45 H 0.97002 * 119.99915 * 354.99595 * 18 16 14 46 46 H 0.96994 * 119.99873 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.71599 * 140.55552 * 27 14 6 48 48 H 1.08996 * 110.72168 * 263.82416 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3830 2.0100 -0.5462 5 6 2.2696 1.7979 1.4456 6 7 3.3604 2.7814 1.3193 7 6 3.6176 3.7843 2.1820 8 8 4.4892 4.5930 1.9313 9 8 2.9086 3.8904 3.3217 10 6 3.2395 4.9955 4.2035 11 6 3.0295 6.3184 3.4641 12 6 2.3361 4.9514 5.4375 13 6 4.7020 4.8809 4.6382 14 6 4.1210 2.4874 0.0958 15 6 4.0864 3.6962 -0.8414 16 6 5.5475 2.1522 0.4472 17 8 6.4496 2.4935 -0.2884 18 7 5.8211 1.4732 1.5788 19 6 7.1063 1.0788 1.8479 20 1 7.8995 1.3125 1.1533 21 6 7.3874 0.3738 3.0118 22 7 6.4223 0.0898 3.8573 23 14 9.1372 -0.1703 3.3746 24 1 10.0194 1.0214 3.4552 25 1 9.1706 -0.8998 4.6678 26 1 9.6123 -1.0656 2.2893 27 6 3.4484 1.2747 -0.5814 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.5794 0.9670 2.0795 32 1 1.3759 2.2725 1.8508 33 1 1.9876 6.4001 3.1544 34 1 3.2775 7.1480 4.1262 35 1 3.6733 6.3496 2.5851 36 1 2.4862 4.0090 5.9641 37 1 2.5842 5.7813 6.0993 38 1 1.2941 5.0329 5.1281 39 1 5.3458 4.9121 3.7592 40 1 4.9502 5.7102 5.3005 41 1 4.8516 3.9384 5.1650 42 1 4.6261 3.4604 -1.7586 43 1 3.0515 3.9406 -1.0812 44 1 4.5570 4.5490 -0.3520 45 1 5.1087 1.2636 2.2029 46 1 6.6186 -0.4020 4.6700 47 1 3.4295 1.3991 -1.6641 48 1 3.9555 0.3496 -0.3073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858981758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:14 Heat of formation + Delta-G solvation = -175.949176 kcal Electronic energy + Delta-G solvation = -31292.278658 eV Core-core repulsion = 27154.079716 eV Total energy + Delta-G solvation = -4138.198942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27942 -40.91879 -39.38701 -38.21722 -37.09951 -36.13364 -35.11897 -33.27953 -32.69595 -31.51739 -28.37951 -28.28154 -27.71690 -27.38647 -26.71654 -24.92936 -23.13398 -22.55204 -20.98074 -20.33864 -19.85835 -19.01939 -18.02377 -17.88249 -17.16006 -17.11638 -16.71146 -16.22871 -15.97538 -15.85749 -15.64271 -15.44523 -15.28895 -15.04387 -14.72601 -14.47334 -14.31246 -13.89490 -13.68194 -13.37680 -13.29715 -13.09859 -13.06703 -12.95161 -12.88872 -12.84923 -12.69648 -12.56149 -12.47583 -12.45489 -12.39486 -12.18409 -12.15375 -11.84008 -11.57506 -11.38196 -11.08133 -10.69479 -10.59062 -10.08763 -9.75792 -8.52228 -6.02005 0.87456 1.34193 1.34772 1.46734 1.74263 1.91931 2.24012 2.59808 2.90207 3.08904 3.14987 3.42767 3.49346 3.75835 3.78642 3.81309 3.94678 3.99741 4.16162 4.29410 4.43827 4.47944 4.58139 4.59620 4.63389 4.67154 4.69292 4.72627 4.75649 4.78021 4.82657 4.84169 4.88239 4.89723 4.97429 5.09963 5.19186 5.28418 5.29343 5.33014 5.36949 5.45135 5.89727 6.23790 6.33744 6.50430 7.03334 7.25406 7.45288 7.99003 8.64412 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.008068 B = 0.006244 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.786052 B = 4483.255313 C = 6195.530764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.392 6.392 3 C 0.098 3.902 4 H 0.119 0.881 5 C 0.078 3.922 6 N -0.595 5.595 7 C 0.666 3.334 8 O -0.579 6.579 9 O -0.362 6.362 10 C 0.125 3.875 11 C -0.173 4.173 12 C -0.130 4.130 13 C -0.179 4.179 14 C 0.180 3.820 15 C -0.131 4.131 16 C 0.436 3.564 17 O -0.628 6.628 18 N -0.556 5.556 19 C -0.340 4.340 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.915 5.915 23 Si 0.994 3.006 24 H -0.275 1.275 25 H -0.265 1.265 26 H -0.266 1.266 27 C -0.110 4.110 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.045 0.955 45 H 0.391 0.609 46 H 0.279 0.721 47 H 0.123 0.877 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.380 5.434 -0.329 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.310 6.310 3 C 0.040 3.960 4 H 0.137 0.863 5 C -0.045 4.045 6 N -0.338 5.338 7 C 0.422 3.578 8 O -0.468 6.468 9 O -0.277 6.277 10 C 0.089 3.911 11 C -0.230 4.230 12 C -0.187 4.187 13 C -0.236 4.236 14 C 0.093 3.907 15 C -0.189 4.189 16 C 0.222 3.778 17 O -0.515 6.515 18 N -0.191 5.191 19 C -0.470 4.470 20 H 0.096 0.904 21 C -0.210 4.210 22 N -0.555 5.555 23 Si 0.817 3.183 24 H -0.201 1.201 25 H -0.190 1.190 26 H -0.191 1.191 27 C -0.149 4.149 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.142 0.858 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.408 5.712 -0.550 18.330 hybrid contribution 1.036 -0.302 0.757 1.318 sum -16.372 5.411 0.207 17.244 Atomic orbital electron populations 1.23098 0.78701 1.04220 1.01566 1.87965 1.22199 1.26104 1.94707 1.23121 0.93655 0.86061 0.93208 0.86303 1.23000 0.90120 0.91722 0.99617 1.47112 1.33473 1.29889 1.23362 1.17619 0.79717 0.80680 0.79779 1.90917 1.35256 1.43274 1.77366 1.86293 1.59550 1.52477 1.29393 1.22456 0.95570 0.83979 0.89138 1.22422 1.02913 0.95809 1.01887 1.21854 0.99286 1.03977 0.93584 1.22443 0.96464 1.02526 1.02186 1.21129 0.87320 0.97891 0.84364 1.21896 1.03276 0.95479 0.98278 1.20833 0.91453 0.82368 0.83113 1.90472 1.48647 1.58897 1.53465 1.41831 1.09544 1.48594 1.19096 1.19684 0.86523 1.34229 1.06518 0.90372 1.26109 1.03854 0.96377 0.94706 1.69692 1.34081 1.39863 1.11819 0.84986 0.76747 0.78411 0.78159 1.20058 1.18964 1.19092 1.22765 0.94804 0.95064 1.02234 0.92772 0.91879 0.88457 0.92029 0.87263 0.90769 0.88860 0.92571 0.92119 0.87628 0.90024 0.93421 0.88603 0.93817 0.90609 0.88619 0.93540 0.77566 0.91181 0.85834 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.89 113.37 1.23 1.52 16 2 O -0.39 -9.33 10.52 -148.98 -1.57 -10.90 16 3 C 0.10 2.33 3.49 31.99 0.11 2.45 16 4 H 0.12 1.98 7.90 -2.39 -0.02 1.96 16 5 C 0.08 2.22 6.64 86.85 0.58 2.80 16 6 N -0.59 -21.72 2.04 -899.29 -1.84 -23.56 16 7 C 0.67 26.78 7.49 129.79 0.97 27.75 16 8 O -0.58 -26.76 10.24 19.79 0.20 -26.56 16 9 O -0.36 -12.62 9.46 -55.49 -0.53 -13.15 16 10 C 0.12 3.63 1.13 -10.79 -0.01 3.61 16 11 C -0.17 -4.43 8.37 71.98 0.60 -3.83 16 12 C -0.13 -2.61 8.85 71.98 0.64 -1.97 16 13 C -0.18 -6.13 8.37 71.98 0.60 -5.53 16 14 C 0.18 7.01 0.77 3.20 0.00 7.01 16 15 C -0.13 -4.58 7.86 71.98 0.57 -4.01 16 16 C 0.44 23.14 5.87 87.66 0.51 23.66 16 17 O -0.63 -37.89 15.72 -3.08 -0.05 -37.94 16 18 N -0.56 -31.70 5.22 -306.99 -1.60 -33.30 16 19 C -0.34 -20.84 9.68 84.04 0.81 -20.02 16 20 H 0.08 5.06 7.17 -2.91 -0.02 5.04 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 22 N -0.91 -52.10 13.05 21.66 0.28 -51.82 16 23 Si 0.99 45.20 29.55 68.60 2.03 47.23 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 C -0.11 -3.43 5.75 31.79 0.18 -3.25 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.11 -2.39 -0.02 0.65 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 32 H 0.11 2.46 8.10 -2.39 -0.02 2.44 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.85 5.88 -2.39 -0.01 1.83 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 2.06 5.88 -2.39 -0.01 2.05 16 40 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.61 7.92 -2.39 -0.02 2.59 16 43 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.05 1.93 6.60 -2.39 -0.02 1.91 16 45 H 0.39 21.96 7.22 -92.71 -0.67 21.29 16 46 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 47 H 0.12 3.11 7.83 -2.39 -0.02 3.09 16 48 H 0.07 2.52 7.84 -2.39 -0.02 2.50 16 Total: -1.00 -80.33 386.11 4.49 -75.84 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: 0.29 Total: 44.08 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: 7.27 Total: 30.08 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.16 Total: -108.68 kcal Atomic # 8 Polarization: -86.61 SS G_CDS: -1.94 Total: -88.55 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -80.33 4.49 -75.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858981758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.107 kcal (2) G-P(sol) polarization free energy of solvation -80.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds