Wall clock time and date at job start Tue Mar 31 2020 14:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00044 * 2 1 4 4 H 1.09006 * 110.88657 * 327.57450 * 3 2 1 5 5 C 1.54911 * 111.00612 * 91.45384 * 3 2 1 6 6 N 1.47423 * 104.83154 * 155.12069 * 5 3 2 7 7 C 1.34785 * 125.64431 * 155.83477 * 6 5 3 8 8 O 1.21508 * 119.99952 * 185.08101 * 7 6 5 9 9 O 1.34643 * 119.99891 * 5.08378 * 7 6 5 10 10 C 1.45195 * 116.99619 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47075 * 59.99709 * 10 9 7 12 12 C 1.52999 * 109.47192 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47142 * 299.99898 * 10 9 7 14 14 C 1.47013 * 108.70870 * 335.87352 * 6 5 3 15 15 C 1.52997 * 109.88459 * 241.49025 * 14 6 5 16 16 C 1.50699 * 109.88597 * 120.47464 * 14 6 5 17 17 O 1.21290 * 120.00419 * 145.36751 * 16 14 6 18 18 N 1.34783 * 119.99526 * 325.09289 * 16 14 6 19 19 C 1.37106 * 119.99468 * 175.24787 * 18 16 14 20 20 H 1.07999 * 119.99848 * 0.02562 * 19 18 16 21 21 C 1.38943 * 119.99677 * 179.97438 * 19 18 16 22 22 N 1.31422 * 120.00090 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00153 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46942 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47221 * 120.00051 * 23 21 19 26 26 H 1.48501 * 109.47526 * 240.00804 * 23 21 19 27 27 C 1.54335 * 107.26894 * 1.06016 * 14 6 5 28 28 H 1.09003 * 109.46941 * 299.99666 * 1 2 3 29 29 H 1.09003 * 109.47193 * 59.99950 * 1 2 3 30 30 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.09003 * 110.36672 * 36.28394 * 5 3 2 32 32 H 1.08998 * 110.36623 * 273.96264 * 5 3 2 33 33 H 1.09004 * 109.47281 * 60.00331 * 11 10 9 34 34 H 1.09011 * 109.47088 * 179.97438 * 11 10 9 35 35 H 1.08994 * 109.47463 * 299.99809 * 11 10 9 36 36 H 1.09005 * 109.46665 * 59.99686 * 12 10 9 37 37 H 1.08997 * 109.47336 * 180.02562 * 12 10 9 38 38 H 1.08994 * 109.47208 * 300.00349 * 12 10 9 39 39 H 1.09001 * 109.47621 * 60.00252 * 13 10 9 40 40 H 1.09011 * 109.46960 * 180.02562 * 13 10 9 41 41 H 1.09000 * 109.47185 * 299.99751 * 13 10 9 42 42 H 1.09002 * 109.46898 * 298.27931 * 15 14 6 43 43 H 1.08996 * 109.47611 * 58.28028 * 15 14 6 44 44 H 1.09006 * 109.47149 * 178.28197 * 15 14 6 45 45 H 0.97000 * 120.00053 * 355.24634 * 18 16 14 46 46 H 0.96996 * 119.99599 * 179.97438 * 22 21 19 47 47 H 1.08997 * 110.72179 * 140.55751 * 27 14 6 48 48 H 1.09007 * 110.71451 * 263.83119 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3829 2.0101 -0.5461 5 6 2.2696 1.7978 1.4457 6 7 3.3605 2.7813 1.3194 7 6 3.6176 3.7844 2.1822 8 8 4.4882 4.5938 1.9309 9 8 2.9096 3.8893 3.3227 10 6 3.2411 4.9939 4.2049 11 6 3.0301 6.3173 3.4667 12 6 2.3382 4.9494 5.4392 13 6 4.7040 4.8792 4.6382 14 6 4.1209 2.4875 0.0960 15 6 5.5702 2.1509 0.4524 16 6 4.0837 3.6769 -0.8288 17 8 5.0466 3.9397 -1.5179 18 7 2.9783 4.4453 -0.8941 19 6 2.9780 5.5820 -1.6607 20 1 3.8634 5.8613 -2.2125 21 6 1.8384 6.3739 -1.7285 22 7 0.7609 6.0336 -1.0573 23 14 1.8381 7.9230 -2.7723 24 1 3.1638 8.0821 -3.4223 25 1 0.7857 7.8173 -3.8148 26 1 1.5645 9.1008 -1.9103 27 6 3.4483 1.2748 -0.5814 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.5794 0.9669 2.0796 32 1 1.3759 2.2724 1.8509 33 1 1.9879 6.3990 3.1580 34 1 3.2786 7.1465 4.1292 35 1 3.6731 6.3492 2.5872 36 1 2.4881 4.0065 5.9653 37 1 2.5867 5.7788 6.1013 38 1 1.2961 5.0313 5.1303 39 1 5.3471 4.9112 3.7587 40 1 4.9527 5.7082 5.3009 41 1 4.8543 3.9364 5.1641 42 1 6.0344 3.0104 0.9362 43 1 5.5890 1.2981 1.1308 44 1 6.1200 1.9047 -0.4561 45 1 2.1830 4.1941 -0.3987 46 1 -0.0346 6.5867 -1.1044 47 1 3.4294 1.3993 -1.6641 48 1 3.9555 0.3497 -0.3073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858981759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:18 Heat of formation + Delta-G solvation = -152.571804 kcal Electronic energy + Delta-G solvation = -31460.069607 eV Core-core repulsion = 27322.884385 eV Total energy + Delta-G solvation = -4137.185223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80134 -39.47452 -37.82300 -36.76378 -35.65741 -34.05464 -33.78574 -31.24566 -31.11185 -30.35973 -27.29090 -27.11016 -26.52028 -25.98808 -25.02164 -23.32403 -21.50410 -21.40745 -19.53521 -18.51994 -18.01494 -17.35348 -16.93936 -16.35556 -15.78307 -15.68431 -15.20064 -14.82311 -14.68115 -14.21523 -14.10494 -13.94570 -13.81925 -13.41604 -13.31617 -13.06582 -12.82858 -12.61008 -12.38738 -12.06884 -11.97231 -11.84070 -11.72341 -11.64084 -11.57740 -11.41382 -11.35292 -11.15061 -11.10433 -11.06769 -10.95595 -10.50075 -10.32821 -10.21038 -10.07214 -9.76158 -9.52081 -9.45909 -8.95373 -8.02251 -7.93988 -6.41022 -3.79560 2.28926 3.15935 3.26376 3.27554 3.34928 3.57350 3.91011 4.18005 4.25023 4.55408 4.76491 4.83713 4.90083 4.93502 5.09408 5.19456 5.25731 5.30147 5.36602 5.41496 5.51137 5.55912 5.65915 5.67876 5.72551 5.78306 5.80040 5.83729 5.92302 5.98030 6.02086 6.04104 6.08408 6.09686 6.16270 6.40915 6.46696 6.58571 6.67728 6.71228 6.82027 7.15575 7.56533 7.79614 8.06998 8.61132 8.76912 9.18481 9.55030 10.05649 10.76506 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.007889 B = 0.006573 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.507514 B = 4259.022721 C = 5832.580245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.072 3.928 4 H 0.089 0.911 5 C 0.085 3.915 6 N -0.595 5.595 7 C 0.672 3.328 8 O -0.541 6.541 9 O -0.364 6.364 10 C 0.137 3.863 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.182 4.182 14 C 0.175 3.825 15 C -0.137 4.137 16 C 0.448 3.552 17 O -0.586 6.586 18 N -0.548 5.548 19 C -0.292 4.292 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.900 5.900 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.111 4.111 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.389 0.611 46 H 0.270 0.730 47 H 0.095 0.905 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -9.132 10.872 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.013 3.987 4 H 0.106 0.894 5 C -0.039 4.039 6 N -0.339 5.339 7 C 0.427 3.573 8 O -0.427 6.427 9 O -0.279 6.279 10 C 0.100 3.900 11 C -0.240 4.240 12 C -0.195 4.195 13 C -0.239 4.239 14 C 0.088 3.912 15 C -0.195 4.195 16 C 0.232 3.768 17 O -0.470 6.470 18 N -0.182 5.182 19 C -0.421 4.421 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.149 4.149 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.223 0.777 46 H 0.080 0.920 47 H 0.114 0.886 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.035 -8.615 10.470 13.598 hybrid contribution -0.940 1.002 -0.036 1.374 sum -1.975 -7.613 10.434 13.067 Atomic orbital electron populations 1.22842 0.80769 1.02606 1.00665 1.87872 1.19972 1.26455 1.94821 1.23331 0.95238 0.85282 0.94811 0.89358 1.22725 0.90742 0.92369 0.98030 1.47052 1.33029 1.30097 1.23704 1.17355 0.80282 0.80343 0.79329 1.90955 1.34692 1.40763 1.76328 1.86262 1.60457 1.51080 1.30135 1.22007 0.95365 0.84574 0.88023 1.22503 1.03859 0.95016 1.02671 1.21829 0.99850 1.02629 0.95181 1.22507 0.96093 1.01813 1.03458 1.21198 0.93098 0.94709 0.82219 1.21885 0.93658 1.01734 1.02263 1.19639 0.84755 0.85763 0.86673 1.90523 1.36340 1.72958 1.47169 1.41764 1.12347 1.21767 1.42327 1.19775 0.99759 0.99158 1.23442 0.87891 1.25236 0.94985 0.99626 0.98003 1.69625 1.02996 1.39634 1.41908 0.85825 0.78481 0.80950 0.79269 1.19182 1.20776 1.20785 1.22765 0.93510 0.97143 1.01467 0.93757 0.93498 0.89625 0.90441 0.89974 0.91899 0.91733 0.88844 0.91815 0.90425 0.91503 0.89228 0.91454 0.92543 0.90916 0.92678 0.90408 0.77722 0.92040 0.88646 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.89 101.05 1.10 1.39 16 2 O -0.37 -4.97 10.52 -35.23 -0.37 -5.34 16 3 C 0.07 1.07 3.49 -24.58 -0.09 0.99 16 4 H 0.09 1.45 7.64 -51.93 -0.40 1.05 16 5 C 0.09 1.27 6.64 -2.53 -0.02 1.25 16 6 N -0.59 -10.85 2.14 -162.76 -0.35 -11.20 16 7 C 0.67 13.32 7.43 54.06 0.40 13.72 16 8 O -0.54 -12.21 10.40 -19.28 -0.20 -12.41 16 9 O -0.36 -6.35 9.46 -40.33 -0.38 -6.73 16 10 C 0.14 2.06 1.13 -90.62 -0.10 1.95 16 11 C -0.18 -3.06 8.37 37.16 0.31 -2.75 16 12 C -0.14 -1.55 8.85 37.16 0.33 -1.22 16 13 C -0.18 -2.53 8.37 37.16 0.31 -2.21 16 14 C 0.17 3.34 0.75 -131.99 -0.10 3.24 16 15 C -0.14 -2.43 7.93 37.16 0.29 -2.14 16 16 C 0.45 11.08 5.51 -10.98 -0.06 11.02 16 17 O -0.59 -16.50 15.73 5.55 0.09 -16.41 16 18 N -0.55 -14.36 5.09 -10.96 -0.06 -14.42 16 19 C -0.29 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 3.11 7.17 -52.49 -0.38 2.74 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 23 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.11 -1.75 5.75 -24.89 -0.14 -1.89 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.09 1.93 5.88 -51.93 -0.31 1.63 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.51 5.88 -51.93 -0.31 1.21 16 40 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.36 7.92 -51.93 -0.41 0.94 16 45 H 0.39 9.95 7.10 -40.82 -0.29 9.66 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 47 H 0.10 1.58 7.82 -51.93 -0.41 1.17 16 48 H 0.09 1.27 7.86 -51.93 -0.41 0.87 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -33.09 385.96 -5.65 -38.74 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -7.89 Total: 13.90 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 2.00 Total: 15.40 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.32 Total: -49.41 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.87 Total: -40.89 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.09 -5.65 -38.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858981759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.833 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds