Wall clock time and date at job start Tue Mar 31 2020 15:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.53004 * 109.46709 * 180.81009 * 3 2 1 5 5 N 1.46903 * 109.47171 * 67.81722 * 4 3 2 6 6 C 1.46893 * 111.00024 * 284.93723 * 5 4 3 7 7 C 1.50702 * 109.47044 * 172.60542 * 6 5 4 8 8 H 1.08001 * 120.00265 * 354.51890 * 7 6 5 9 9 C 1.37880 * 119.99722 * 174.51465 * 7 6 5 10 10 N 1.31515 * 120.00175 * 353.13762 * 9 7 6 11 11 Si 1.86799 * 119.99799 * 173.14644 * 9 7 6 12 12 H 1.48499 * 109.47665 * 64.99909 * 11 9 7 13 13 H 1.48499 * 109.47212 * 185.00560 * 11 9 7 14 14 H 1.48513 * 109.46886 * 304.99997 * 11 9 7 15 15 C 1.46905 * 110.99970 * 160.98060 * 5 4 3 16 16 C 1.50700 * 109.47347 * 293.95826 * 15 5 4 17 17 C 1.38320 * 119.93468 * 104.99304 * 16 15 5 18 18 C 1.38231 * 120.07222 * 180.02562 * 17 16 15 19 19 F 1.35102 * 120.03167 * 179.97438 * 18 17 16 20 20 C 1.39121 * 119.93724 * 0.25657 * 18 17 16 21 21 N 1.39833 * 120.06433 * 179.74527 * 20 18 17 22 22 C 1.46903 * 110.99663 * 120.00376 * 21 20 18 23 23 C 1.46898 * 111.00422 * 243.95269 * 21 20 18 24 24 C 1.38765 * 119.86607 * 359.49662 * 20 18 17 25 25 C 1.38391 * 119.92805 * 0.50005 * 24 20 18 26 26 F 1.35101 * 119.97235 * 179.76658 * 25 24 20 27 27 H 1.09006 * 109.47138 * 303.69776 * 1 2 3 28 28 H 1.09002 * 109.47395 * 63.69688 * 1 2 3 29 29 H 1.09000 * 109.47080 * 183.69977 * 1 2 3 30 30 H 1.08996 * 109.47210 * 60.80760 * 3 2 1 31 31 H 1.08998 * 109.46651 * 300.80378 * 3 2 1 32 32 H 1.08995 * 109.47001 * 307.81745 * 4 3 2 33 33 H 1.09000 * 109.46888 * 187.81489 * 4 3 2 34 34 H 1.08996 * 109.47179 * 292.60523 * 6 5 4 35 35 H 1.08999 * 109.47155 * 52.60716 * 6 5 4 36 36 H 0.96998 * 119.99839 * 179.97438 * 10 9 7 37 37 H 1.08990 * 109.46965 * 173.95085 * 15 5 4 38 38 H 1.09007 * 109.46456 * 53.95333 * 15 5 4 39 39 H 1.07997 * 119.96457 * 0.05093 * 17 16 15 40 40 H 1.08996 * 109.47144 * 60.00188 * 22 21 20 41 41 H 1.09006 * 109.46913 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47057 * 299.99735 * 22 21 20 43 43 H 1.09007 * 109.46595 * 60.00187 * 23 21 20 44 44 H 1.08998 * 109.47297 * 179.97438 * 23 21 20 45 45 H 1.09000 * 109.47484 * 300.00663 * 23 21 20 46 46 H 1.08000 * 120.03636 * 180.22528 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0204 5 7 3.9655 0.6321 -1.3118 6 6 3.6921 -0.8093 -1.3849 7 6 3.9760 -1.3042 -2.7797 8 1 4.2390 -0.6035 -3.5583 9 6 3.8999 -2.6517 -3.0618 10 7 3.7133 -3.5176 -2.0897 11 14 4.0623 -3.2474 -4.8248 12 1 5.4285 -2.9489 -5.3245 13 1 3.8256 -4.7126 -4.8761 14 1 3.0616 -2.5544 -5.6756 15 6 5.3868 0.9115 -1.5567 16 6 5.5865 2.3965 -1.7177 17 6 6.1584 3.1310 -0.6946 18 6 6.3424 4.4934 -0.8391 19 9 6.9006 5.2101 0.1609 20 6 5.9468 5.1268 -2.0128 21 7 6.1267 6.5057 -2.1597 22 6 6.9942 6.8041 -3.3071 23 6 4.8354 7.1951 -2.2828 24 6 5.3780 4.3866 -3.0396 25 6 5.1964 3.0229 -2.8891 26 9 4.6384 2.3022 -3.8863 27 1 -0.3634 0.5702 0.8550 28 1 -0.3634 0.4554 -0.9213 29 1 -0.3633 -1.0255 0.0663 30 1 1.7001 1.8413 0.8971 31 1 1.6771 1.8514 -0.8827 32 1 3.8581 0.5232 0.7835 33 1 3.9797 2.1702 0.1193 34 1 4.3298 -1.3365 -0.6755 35 1 2.6461 -0.9935 -1.1399 36 1 3.6594 -4.4655 -2.2883 37 1 5.7060 0.4013 -2.4653 38 1 5.9778 0.5548 -0.7130 39 1 6.4619 2.6395 0.2179 40 1 6.5404 6.4120 -4.2172 41 1 7.1171 7.8833 -3.3986 42 1 7.9683 6.3385 -3.1569 43 1 4.2400 7.0137 -1.3879 44 1 5.0045 8.2660 -2.3953 45 1 4.3035 6.8171 -3.1558 46 1 5.0732 4.8749 -3.9534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862238616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:05 Heat of formation + Delta-G solvation = -85.965814 kcal Electronic energy + Delta-G solvation = -29199.246603 eV Core-core repulsion = 24953.862117 eV Total energy + Delta-G solvation = -4245.384486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.73791 -48.49703 -39.77336 -38.03092 -37.00825 -35.52242 -32.52546 -31.01920 -30.14900 -29.26766 -27.86877 -26.98756 -26.05641 -25.07316 -23.46857 -22.80690 -22.14071 -21.08116 -19.87481 -17.53626 -17.31004 -17.00712 -16.46836 -15.92079 -15.82442 -15.64915 -15.25137 -15.11162 -14.85547 -14.78895 -14.48876 -14.47056 -14.10861 -14.04834 -13.72774 -13.36140 -13.13465 -12.69013 -12.66174 -12.43491 -12.21454 -11.98693 -11.93580 -11.62739 -11.46875 -11.25514 -11.17341 -10.98614 -10.79350 -10.75129 -10.49926 -10.32281 -9.79684 -9.27076 -9.06735 -8.88444 -8.77993 -8.35056 -8.24947 -7.24108 -5.92685 -3.91386 0.94197 1.05368 3.33287 3.38125 3.42488 3.46782 3.48859 4.21322 4.32350 4.38674 4.49964 4.59443 4.87029 4.89332 4.99005 5.04096 5.09020 5.21463 5.27754 5.42568 5.44790 5.51397 5.59388 5.60769 5.67326 5.73863 5.78245 5.80593 5.85560 5.91518 5.98278 6.06130 6.14903 6.18920 6.32408 6.43394 6.51017 6.53540 6.66909 7.09231 7.45959 7.53274 7.69941 7.89971 8.24623 8.31215 8.63851 9.16804 9.70379 11.17736 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.003893 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.032301 B = 7190.600008 C = 8306.645781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.071 3.929 4 C 0.050 3.950 5 N -0.525 5.525 6 C 0.184 3.816 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.095 3.905 16 C -0.072 4.072 17 C -0.124 4.124 18 C 0.109 3.891 19 F -0.129 7.129 20 C 0.066 3.934 21 N -0.504 5.504 22 C 0.026 3.974 23 C 0.027 3.973 24 C -0.164 4.164 25 C 0.129 3.871 26 F -0.117 7.117 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.071 0.929 34 H -0.007 1.007 35 H 0.068 0.932 36 H 0.259 0.741 37 H 0.105 0.895 38 H 0.038 0.962 39 H 0.145 0.855 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 19.148 2.087 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.006 4.006 4 C -0.079 4.079 5 N -0.250 5.250 6 C 0.060 3.940 7 C -0.547 4.547 8 H 0.080 0.920 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.032 4.032 16 C -0.074 4.074 17 C -0.144 4.144 18 C 0.088 3.912 19 F -0.107 7.107 20 C -0.029 4.029 21 N -0.225 5.225 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.185 4.185 25 C 0.108 3.892 26 F -0.095 7.095 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.011 0.989 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.163 0.837 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.001 19.196 2.171 19.421 hybrid contribution -0.102 -0.814 -1.074 1.351 sum 1.899 18.382 1.098 18.512 Atomic orbital electron populations 1.22651 0.82614 1.02214 0.98945 1.88154 1.18407 1.27097 1.94917 1.22481 0.94029 0.85165 0.98900 1.22127 0.93667 0.99364 0.92710 1.62259 1.14391 1.20217 1.28114 1.20107 0.98789 0.78642 0.96434 1.21185 1.46351 0.91762 0.95385 0.92012 1.24926 0.95758 0.96789 0.96842 1.69975 1.50473 1.01899 1.31168 0.86684 0.78515 0.77371 0.85556 1.20501 1.21489 1.20195 1.20986 0.91464 0.87692 1.03092 1.20183 0.97065 0.98326 0.91784 1.20947 1.01584 0.91542 1.00321 1.17394 0.99278 0.88967 0.85523 1.91487 1.82573 1.78064 1.58616 1.18385 1.01652 0.89667 0.93220 1.59619 1.15233 1.04812 1.42815 1.22493 0.97209 1.01983 0.90358 1.22486 0.89164 0.98827 1.01481 1.21415 1.03345 0.93067 1.00690 1.17314 0.96910 0.88584 0.86425 1.91598 1.82032 1.77501 1.58367 0.95190 0.94481 0.90061 0.94328 0.92997 0.94524 0.91062 0.98926 0.91472 0.93091 0.87726 0.94357 0.83739 0.94762 0.90685 0.90932 0.90934 0.90691 0.94752 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.21 7.79 -35.23 -0.27 -7.48 16 3 C 0.07 1.21 6.24 37.16 0.23 1.44 16 4 C 0.05 0.89 5.39 -3.82 -0.02 0.87 16 5 N -0.52 -11.05 4.44 -237.52 -1.06 -12.11 16 6 C 0.18 4.78 4.51 -4.98 -0.02 4.76 16 7 C -0.51 -14.24 8.21 -34.44 -0.28 -14.53 16 8 H 0.06 1.73 7.23 -52.49 -0.38 1.35 16 9 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 10 N -0.90 -26.81 13.28 55.43 0.74 -26.07 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.10 1.80 4.62 -4.97 -0.02 1.78 16 16 C -0.07 -1.13 4.51 -104.51 -0.47 -1.60 16 17 C -0.12 -1.67 8.57 -39.55 -0.34 -2.01 16 18 C 0.11 1.45 7.31 -39.26 -0.29 1.17 16 19 F -0.13 -1.77 17.08 2.25 0.04 -1.74 16 20 C 0.07 0.83 4.74 -83.69 -0.40 0.43 16 21 N -0.50 -5.52 4.82 -186.78 -0.90 -6.42 16 22 C 0.03 0.23 9.34 60.07 0.56 0.79 16 23 C 0.03 0.24 9.39 60.06 0.56 0.80 16 24 C -0.16 -2.13 8.55 -39.33 -0.34 -2.46 16 25 C 0.13 2.02 7.24 -39.45 -0.29 1.73 16 26 F -0.12 -2.15 16.74 2.25 0.04 -2.12 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.68 8.01 -51.93 -0.42 0.27 16 33 H 0.07 1.10 6.03 -51.93 -0.31 0.79 16 34 H -0.01 -0.20 8.10 -51.93 -0.42 -0.62 16 35 H 0.07 1.87 5.15 -51.93 -0.27 1.61 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.10 2.23 6.50 -51.93 -0.34 1.89 16 38 H 0.04 0.69 7.93 -51.93 -0.41 0.28 16 39 H 0.14 1.73 8.00 -52.49 -0.42 1.31 16 40 H 0.03 0.28 7.11 -51.93 -0.37 -0.08 16 41 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 45 H 0.03 0.29 7.36 -51.93 -0.38 -0.09 16 46 H 0.14 1.55 7.02 -52.49 -0.37 1.18 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -31.44 380.07 -7.83 -39.27 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.02 Total: -2.31 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.09 Total: -3.65 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -1.22 Total: -44.60 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.27 Total: -7.48 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.44 -7.83 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862238616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.695 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds