Wall clock time and date at job start Tue Mar 31 2020 15:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.53004 * 109.46709 * 180.81009 * 3 2 1 5 5 N 1.46903 * 109.47171 * 67.81722 * 4 3 2 6 6 C 1.46893 * 111.00024 * 284.93723 * 5 4 3 7 7 C 1.50702 * 109.47044 * 172.60542 * 6 5 4 8 8 H 1.08001 * 120.00265 * 354.51890 * 7 6 5 9 9 C 1.37880 * 119.99722 * 174.51465 * 7 6 5 10 10 N 1.31515 * 120.00175 * 353.13762 * 9 7 6 11 11 Si 1.86799 * 119.99799 * 173.14644 * 9 7 6 12 12 H 1.48499 * 109.47665 * 64.99909 * 11 9 7 13 13 H 1.48499 * 109.47212 * 185.00560 * 11 9 7 14 14 H 1.48513 * 109.46886 * 304.99997 * 11 9 7 15 15 C 1.46905 * 110.99970 * 160.98060 * 5 4 3 16 16 C 1.50700 * 109.47347 * 293.95826 * 15 5 4 17 17 C 1.38320 * 119.93468 * 104.99304 * 16 15 5 18 18 C 1.38231 * 120.07222 * 180.02562 * 17 16 15 19 19 F 1.35102 * 120.03167 * 179.97438 * 18 17 16 20 20 C 1.39121 * 119.93724 * 0.25657 * 18 17 16 21 21 N 1.39833 * 120.06433 * 179.74527 * 20 18 17 22 22 C 1.46903 * 110.99663 * 120.00376 * 21 20 18 23 23 C 1.46898 * 111.00422 * 243.95269 * 21 20 18 24 24 C 1.38765 * 119.86607 * 359.49662 * 20 18 17 25 25 C 1.38391 * 119.92805 * 0.50005 * 24 20 18 26 26 F 1.35101 * 119.97235 * 179.76658 * 25 24 20 27 27 H 1.09006 * 109.47138 * 303.69776 * 1 2 3 28 28 H 1.09002 * 109.47395 * 63.69688 * 1 2 3 29 29 H 1.09000 * 109.47080 * 183.69977 * 1 2 3 30 30 H 1.08996 * 109.47210 * 60.80760 * 3 2 1 31 31 H 1.08998 * 109.46651 * 300.80378 * 3 2 1 32 32 H 1.08995 * 109.47001 * 307.81745 * 4 3 2 33 33 H 1.09000 * 109.46888 * 187.81489 * 4 3 2 34 34 H 1.08996 * 109.47179 * 292.60523 * 6 5 4 35 35 H 1.08999 * 109.47155 * 52.60716 * 6 5 4 36 36 H 0.96998 * 119.99839 * 179.97438 * 10 9 7 37 37 H 1.08990 * 109.46965 * 173.95085 * 15 5 4 38 38 H 1.09007 * 109.46456 * 53.95333 * 15 5 4 39 39 H 1.07997 * 119.96457 * 0.05093 * 17 16 15 40 40 H 1.08996 * 109.47144 * 60.00188 * 22 21 20 41 41 H 1.09006 * 109.46913 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47057 * 299.99735 * 22 21 20 43 43 H 1.09007 * 109.46595 * 60.00187 * 23 21 20 44 44 H 1.08998 * 109.47297 * 179.97438 * 23 21 20 45 45 H 1.09000 * 109.47484 * 300.00663 * 23 21 20 46 46 H 1.08000 * 120.03636 * 180.22528 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0204 5 7 3.9655 0.6321 -1.3118 6 6 3.6921 -0.8093 -1.3849 7 6 3.9760 -1.3042 -2.7797 8 1 4.2390 -0.6035 -3.5583 9 6 3.8999 -2.6517 -3.0618 10 7 3.7133 -3.5176 -2.0897 11 14 4.0623 -3.2474 -4.8248 12 1 5.4285 -2.9489 -5.3245 13 1 3.8256 -4.7126 -4.8761 14 1 3.0616 -2.5544 -5.6756 15 6 5.3868 0.9115 -1.5567 16 6 5.5865 2.3965 -1.7177 17 6 6.1584 3.1310 -0.6946 18 6 6.3424 4.4934 -0.8391 19 9 6.9006 5.2101 0.1609 20 6 5.9468 5.1268 -2.0128 21 7 6.1267 6.5057 -2.1597 22 6 6.9942 6.8041 -3.3071 23 6 4.8354 7.1951 -2.2828 24 6 5.3780 4.3866 -3.0396 25 6 5.1964 3.0229 -2.8891 26 9 4.6384 2.3022 -3.8863 27 1 -0.3634 0.5702 0.8550 28 1 -0.3634 0.4554 -0.9213 29 1 -0.3633 -1.0255 0.0663 30 1 1.7001 1.8413 0.8971 31 1 1.6771 1.8514 -0.8827 32 1 3.8581 0.5232 0.7835 33 1 3.9797 2.1702 0.1193 34 1 4.3298 -1.3365 -0.6755 35 1 2.6461 -0.9935 -1.1399 36 1 3.6594 -4.4655 -2.2883 37 1 5.7060 0.4013 -2.4653 38 1 5.9778 0.5548 -0.7130 39 1 6.4619 2.6395 0.2179 40 1 6.5404 6.4120 -4.2172 41 1 7.1171 7.8833 -3.3986 42 1 7.9683 6.3385 -3.1569 43 1 4.2400 7.0137 -1.3879 44 1 5.0045 8.2660 -2.3953 45 1 4.3035 6.8171 -3.1558 46 1 5.0732 4.8749 -3.9534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862238616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:04 Heat of formation + Delta-G solvation = -106.231618 kcal Electronic energy + Delta-G solvation = -29200.125394 eV Core-core repulsion = 24953.862117 eV Total energy + Delta-G solvation = -4246.263277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.81965 -49.81356 -40.83598 -39.42990 -38.20408 -36.91029 -34.63570 -32.22316 -31.33820 -30.79555 -28.64379 -28.53785 -27.29055 -26.56318 -24.75386 -23.91412 -23.81040 -22.25652 -21.42657 -18.67930 -18.56917 -18.30754 -18.08850 -17.39582 -17.07922 -16.99795 -16.68471 -16.30593 -16.25420 -16.03790 -15.68618 -15.46553 -15.37930 -15.34358 -15.08414 -14.72926 -14.57964 -14.09421 -13.64472 -13.61671 -13.42840 -13.34144 -13.02031 -12.87190 -12.73767 -12.66479 -12.60417 -12.51086 -12.44552 -12.32556 -12.05844 -12.03140 -11.67129 -11.11418 -10.59363 -10.34144 -10.06535 -9.68528 -9.45209 -8.98653 -8.12546 -6.18703 -0.15800 -0.06114 1.40161 1.42991 1.51290 2.20546 2.43878 2.63846 3.01330 3.10965 3.21291 3.25973 3.37559 3.58905 3.65085 4.00336 4.17256 4.19969 4.35304 4.38443 4.39614 4.42009 4.48953 4.56501 4.59550 4.60768 4.61044 4.69651 4.76004 4.86829 4.88785 4.90614 4.94821 4.96923 4.97747 5.07895 5.16407 5.36893 5.55241 5.63463 5.73260 5.81209 6.13740 6.19549 6.32175 6.47781 6.70103 6.98180 7.47824 8.97963 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.003893 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.032301 B = 7190.600008 C = 8306.645781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.071 3.929 4 C 0.050 3.950 5 N -0.530 5.530 6 C 0.203 3.797 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.957 3.043 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.101 3.899 16 C -0.083 4.083 17 C -0.112 4.112 18 C 0.107 3.893 19 F -0.129 7.129 20 C 0.080 3.920 21 N -0.517 5.517 22 C 0.024 3.976 23 C 0.025 3.975 24 C -0.151 4.151 25 C 0.110 3.890 26 F -0.139 7.139 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.026 0.974 33 H 0.099 0.901 34 H -0.045 1.045 35 H 0.049 0.951 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.160 0.840 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.039 0.961 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 21.868 1.673 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C -0.006 4.006 4 C -0.078 4.078 5 N -0.254 5.254 6 C 0.077 3.923 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.192 4.192 10 N -0.572 5.572 11 Si 0.782 3.218 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.197 1.197 15 C -0.027 4.027 16 C -0.085 4.085 17 C -0.132 4.132 18 C 0.087 3.913 19 F -0.107 7.107 20 C -0.015 4.015 21 N -0.238 5.238 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.172 4.172 25 C 0.089 3.911 26 F -0.118 7.118 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.118 0.882 34 H -0.027 1.027 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.177 0.823 40 H 0.058 0.942 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.057 0.943 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.098 21.953 1.757 22.123 hybrid contribution -0.103 -1.506 -0.884 1.749 sum 1.995 20.448 0.873 20.563 Atomic orbital electron populations 1.22798 0.80649 1.02805 1.00465 1.88079 1.20762 1.28803 1.95220 1.22582 0.93033 0.84525 1.00420 1.22255 0.94875 1.00123 0.90559 1.62138 1.16008 1.16936 1.30323 1.19689 0.96758 0.81386 0.94448 1.21458 1.45992 0.92042 0.96221 0.92534 1.25757 0.95425 0.96968 1.01016 1.70105 1.51563 1.02171 1.33318 0.85638 0.78838 0.76955 0.80389 1.19567 1.20831 1.19668 1.20791 0.90201 0.90084 1.01584 1.19794 0.99365 0.96307 0.92996 1.20947 1.00519 0.91668 1.00084 1.17432 0.99273 0.88808 0.85820 1.91492 1.82579 1.77979 1.58684 1.18529 0.99794 0.90757 0.92434 1.59736 1.16500 1.03447 1.44115 1.22588 0.96513 1.03466 0.89692 1.22574 0.88159 0.99944 1.01449 1.21497 1.02478 0.91682 1.01500 1.17580 0.97837 0.89597 0.86053 1.91540 1.82668 1.78251 1.59308 0.92082 0.94190 0.90290 0.90716 0.93351 0.95603 0.88249 1.02697 0.93373 0.92998 0.90892 0.94087 0.82278 0.94178 0.88527 0.91436 0.91450 0.88520 0.94270 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.41 -16.23 7.79 -148.98 -1.16 -17.39 16 3 C 0.07 2.35 6.24 71.98 0.45 2.80 16 4 C 0.05 1.78 5.39 86.30 0.47 2.24 16 5 N -0.53 -22.98 4.44 -905.37 -4.02 -27.00 16 6 C 0.20 11.04 4.51 85.56 0.39 11.42 16 7 C -0.52 -30.15 8.21 25.60 0.21 -29.94 16 8 H 0.06 3.28 7.23 -2.91 -0.02 3.26 16 9 C 0.01 0.36 5.45 84.66 0.46 0.82 16 10 N -0.93 -57.43 13.28 21.45 0.28 -57.14 16 11 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 15 C 0.10 3.95 4.62 85.56 0.40 4.34 16 16 C -0.08 -2.58 4.51 -19.80 -0.09 -2.67 16 17 C -0.11 -2.87 8.57 22.29 0.19 -2.68 16 18 C 0.11 2.62 7.31 22.48 0.16 2.79 16 19 F -0.13 -3.23 17.08 44.97 0.77 -2.46 16 20 C 0.08 1.82 4.74 38.20 0.18 2.00 16 21 N -0.52 -9.72 4.82 -744.84 -3.59 -13.31 16 22 C 0.02 0.34 9.34 127.69 1.19 1.53 16 23 C 0.02 0.36 9.39 127.69 1.20 1.56 16 24 C -0.15 -3.61 8.55 22.43 0.19 -3.42 16 25 C 0.11 3.39 7.24 22.36 0.16 3.56 16 26 F -0.14 -5.21 16.74 44.97 0.75 -4.45 16 27 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.03 0.98 8.01 -2.39 -0.02 0.96 16 33 H 0.10 2.93 6.03 -2.39 -0.01 2.92 16 34 H -0.04 -2.71 8.10 -2.39 -0.02 -2.73 16 35 H 0.05 2.82 5.15 -2.39 -0.01 2.81 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.07 3.28 6.50 -2.39 -0.02 3.27 16 38 H 0.04 1.54 7.93 -2.38 -0.02 1.52 16 39 H 0.16 3.54 8.00 -2.91 -0.02 3.51 16 40 H 0.04 0.54 7.11 -2.39 -0.02 0.52 16 41 H 0.10 0.99 8.12 -2.38 -0.02 0.97 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.10 1.00 8.12 -2.39 -0.02 0.98 16 45 H 0.04 0.54 7.36 -2.39 -0.02 0.52 16 46 H 0.16 3.11 7.02 -2.91 -0.02 3.09 16 Total: -1.00 -70.08 380.07 2.84 -67.24 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.98 Total: 10.26 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 6.81 Total: -3.52 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -7.33 Total: -97.46 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -1.16 Total: -17.39 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.52 Total: -6.92 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.08 2.84 -67.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862238616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.995 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds