Wall clock time and date at job start Tue Mar 31 2020 15:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47344 * 2 1 4 4 C 1.52996 * 109.47003 * 239.99529 * 2 1 3 5 5 O 1.45199 * 109.46904 * 119.99910 * 2 1 3 6 6 C 1.34644 * 117.00167 * 60.00031 * 5 2 1 7 7 O 1.21514 * 119.99901 * 359.97438 * 6 5 2 8 8 N 1.34768 * 120.00133 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00264 * 179.97438 * 8 6 5 10 10 C 1.52991 * 109.47530 * 179.97438 * 9 8 6 11 11 N 1.46500 * 113.00071 * 314.66864 * 10 9 8 12 12 C 1.34779 * 120.00169 * 177.83623 * 11 10 9 13 13 O 1.21282 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00037 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47574 * 89.99780 * 20 18 16 22 22 H 1.48500 * 109.47346 * 209.99892 * 20 18 16 23 23 H 1.48499 * 109.47067 * 329.99541 * 20 18 16 24 24 C 1.54046 * 113.92587 * 86.59900 * 10 9 8 25 25 O 1.44175 * 85.51732 * 136.81896 * 24 10 9 26 26 C 1.44185 * 93.34247 * 335.80795 * 25 24 10 27 27 H 1.09004 * 109.47281 * 300.00254 * 1 2 3 28 28 H 1.09007 * 109.46885 * 60.00063 * 1 2 3 29 29 H 1.08997 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47307 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47078 * 299.99819 * 3 2 1 32 32 H 1.09001 * 109.47560 * 59.99953 * 3 2 1 33 33 H 1.08997 * 109.47457 * 300.00444 * 4 2 1 34 34 H 1.09007 * 109.46967 * 60.00458 * 4 2 1 35 35 H 1.08999 * 109.47575 * 180.02562 * 4 2 1 36 36 H 0.96999 * 120.00361 * 359.97438 * 8 6 5 37 37 H 1.09007 * 109.46734 * 59.99381 * 9 8 6 38 38 H 1.09003 * 109.47182 * 300.00017 * 9 8 6 39 39 H 0.96996 * 119.99986 * 357.84221 * 11 10 9 40 40 H 1.09000 * 109.47247 * 60.00371 * 14 12 11 41 41 H 1.09001 * 109.47358 * 299.99798 * 14 12 11 42 42 H 1.08993 * 109.46955 * 300.00219 * 15 14 12 43 43 H 1.09000 * 109.47050 * 60.00048 * 15 14 12 44 44 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 45 45 H 1.08997 * 113.86180 * 250.96331 * 24 10 9 46 46 H 1.08996 * 113.86043 * 22.66677 * 24 10 9 47 47 H 1.08993 * 113.86235 * 270.04736 * 26 25 24 48 48 H 1.08994 * 113.98152 * 138.35195 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3384 7 8 0.9508 -2.5095 0.5041 8 7 2.0670 -2.6654 2.4172 9 6 1.6729 -4.0666 2.5838 10 6 2.2730 -4.6146 3.8800 11 7 3.6825 -4.2552 4.0551 12 6 4.3395 -4.6284 5.1711 13 8 3.7641 -5.2622 6.0302 14 6 5.7891 -4.2582 5.3514 15 6 6.2907 -4.7994 6.6918 16 6 7.7406 -4.4297 6.8718 17 1 8.2531 -3.8656 6.1066 18 6 8.4131 -4.8125 8.0129 19 7 7.7891 -5.4998 8.9446 20 14 10.2099 -4.3537 8.2365 21 1 10.3039 -3.0393 8.9211 22 1 10.8867 -5.3892 9.0580 23 1 10.8679 -4.2680 6.9080 24 6 1.4061 -4.3579 5.1272 25 8 1.7170 -5.7196 5.4844 26 6 1.9772 -6.1071 4.1202 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1299 -0.7218 -1.2490 36 1 2.6266 -2.2366 3.0834 37 1 2.0394 -4.6499 1.7390 38 1 0.5860 -4.1354 2.6286 39 1 4.1427 -3.7486 3.3678 40 1 5.8917 -3.1732 5.3360 41 1 6.3779 -4.6904 4.5423 42 1 5.7021 -4.3676 7.5011 43 1 6.1882 -5.8844 6.7068 44 1 8.2621 -5.7688 9.7476 45 1 1.8232 -3.6169 5.8092 46 1 0.3524 -4.1898 4.9048 47 1 1.0979 -6.4731 3.5904 48 1 2.8467 -6.7536 4.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862299765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:25 Heat of formation + Delta-G solvation = -127.246710 kcal Electronic energy + Delta-G solvation = -28890.422674 eV Core-core repulsion = 24754.335630 eV Total energy + Delta-G solvation = -4136.087044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41978 -40.85747 -38.14193 -37.73535 -35.48320 -34.37808 -33.44805 -33.29395 -31.03862 -29.76562 -27.75672 -27.71982 -26.59137 -25.86374 -25.47528 -22.44048 -22.31662 -20.61934 -19.93288 -19.34727 -18.53890 -17.24454 -16.89798 -16.68593 -16.39777 -15.97516 -15.83079 -15.35160 -14.95281 -14.85119 -14.78223 -14.69218 -14.45358 -14.02889 -13.78119 -13.61998 -13.06122 -12.99251 -12.83971 -12.52461 -12.26266 -12.24611 -12.16915 -12.01994 -11.82601 -11.68854 -11.47132 -11.17464 -10.93551 -10.72719 -10.67857 -10.60573 -10.35086 -9.96966 -9.76676 -9.57547 -9.49641 -9.12467 -8.96967 -8.89259 -8.32835 -5.96692 -4.01355 1.80113 2.52784 3.14199 3.16167 3.32618 3.39057 3.41450 3.63530 3.81051 4.16459 4.20874 4.35805 4.40916 4.46660 4.54749 4.97888 5.09551 5.12085 5.14165 5.18857 5.18875 5.32436 5.34265 5.38209 5.44102 5.50302 5.50691 5.59257 5.62840 5.64446 5.78141 5.93460 6.00094 6.04182 6.18498 6.19930 6.20977 6.34916 6.57748 6.85316 7.04581 7.71620 7.74330 7.85084 8.05109 8.06294 8.37525 8.75906 9.07322 9.62311 11.14103 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.002598 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.842958 B =10774.407766 C =12427.477850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.652 3.348 7 O -0.568 6.568 8 N -0.711 5.711 9 C 0.140 3.860 10 C 0.097 3.903 11 N -0.729 5.729 12 C 0.497 3.503 13 O -0.485 6.485 14 C -0.128 4.128 15 C 0.039 3.961 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.032 3.968 25 O -0.329 6.329 26 C 0.035 3.965 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.410 0.590 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.399 0.601 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 10.656 -20.757 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.405 3.595 7 O -0.457 6.457 8 N -0.371 5.371 9 C 0.017 3.983 10 C 0.008 3.992 11 N -0.386 5.386 12 C 0.285 3.715 13 O -0.355 6.355 14 C -0.168 4.168 15 C 0.001 3.999 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.046 4.046 25 O -0.246 6.246 26 C -0.044 4.044 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.234 0.766 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.492 9.742 -20.115 27.776 hybrid contribution 1.460 0.809 -0.145 1.675 sum -15.032 10.551 -20.260 27.345 Atomic orbital electron populations 1.22521 0.93968 1.05041 1.02548 1.22089 0.94363 0.91575 0.81993 1.21872 1.02441 0.92424 1.03173 1.22521 1.01706 1.03444 0.96433 1.86327 1.71462 1.23440 1.46540 1.18050 0.78772 0.80602 0.82060 1.90909 1.41052 1.70505 1.43260 1.44684 1.55985 1.12511 1.23955 1.21671 1.00623 0.79189 0.96810 1.23602 0.84749 0.96565 0.94308 1.46081 1.09126 1.60123 1.23219 1.21739 0.90243 0.78973 0.80528 1.90872 1.68021 1.36066 1.40572 1.21882 0.88913 1.02060 1.03941 1.18887 0.95059 0.97039 0.88906 1.21209 0.96028 1.35456 1.03924 0.92669 1.25024 0.98171 0.95152 0.96027 1.69999 1.36501 1.37714 1.08506 0.86598 0.85159 0.78138 0.78086 1.20680 1.21224 1.19913 1.24331 0.97730 0.88089 0.94471 1.90038 1.89043 1.23030 1.22505 1.24274 1.00999 0.94564 0.84607 0.92122 0.91120 0.89397 0.91313 0.90108 0.91388 0.89395 0.91120 0.92041 0.75426 0.89873 0.89272 0.76606 0.90354 0.90366 0.95814 0.95808 0.92935 0.89053 0.90017 0.89785 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.37 37.16 0.31 -1.12 16 2 C 0.14 1.11 1.13 -90.63 -0.10 1.01 16 3 C -0.14 -0.85 8.85 37.15 0.33 -0.52 16 4 C -0.18 -1.46 8.37 37.16 0.31 -1.14 16 5 O -0.36 -3.61 9.94 -40.33 -0.40 -4.02 16 6 C 0.65 6.84 8.06 54.05 0.44 7.27 16 7 O -0.57 -6.94 11.88 -19.28 -0.23 -7.17 16 8 N -0.71 -6.19 5.17 -65.28 -0.34 -6.53 16 9 C 0.14 1.18 5.31 -4.04 -0.02 1.15 16 10 C 0.10 1.04 1.56 -130.74 -0.20 0.84 16 11 N -0.73 -8.89 4.98 -53.74 -0.27 -9.16 16 12 C 0.50 8.79 7.32 -10.99 -0.08 8.71 16 13 O -0.48 -10.67 12.02 -19.38 -0.23 -10.91 16 14 C -0.13 -2.47 5.64 -27.88 -0.16 -2.62 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 17 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.03 0.40 7.79 37.62 0.29 0.70 16 25 O -0.33 -5.47 9.62 -60.17 -0.58 -6.04 16 26 C 0.03 0.43 7.90 37.61 0.30 0.72 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.09 0.87 5.88 -51.93 -0.31 0.56 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.88 5.88 -51.93 -0.31 0.57 16 34 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.41 3.29 7.74 -40.82 -0.32 2.98 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16 39 H 0.40 3.85 7.85 -40.82 -0.32 3.53 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.09 1.27 7.90 -51.93 -0.41 0.86 16 46 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 47 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 48 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -35.63 387.86 -7.54 -43.17 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.93 Total: 2.48 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.88 Total: 2.36 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.13 Total: -42.27 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.44 Total: -28.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.63 -7.54 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862299765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.079 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds