Wall clock time and date at job start Tue Mar 31 2020 15:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47451 * 2 1 4 4 C 1.52994 * 109.46803 * 239.99415 * 2 1 3 5 5 O 1.45202 * 109.46716 * 119.99943 * 2 1 3 6 6 C 1.34634 * 117.00180 * 59.99725 * 5 2 1 7 7 O 1.21509 * 120.00327 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99869 * 179.97438 * 6 5 2 9 9 C 1.47449 * 125.62407 * 180.02562 * 8 6 5 10 10 C 1.54711 * 104.95816 * 182.38067 * 9 8 6 11 11 H 1.09006 * 110.97889 * 138.38751 * 10 9 8 12 12 N 1.46499 * 110.97845 * 262.14165 * 10 9 8 13 13 C 1.34779 * 119.99872 * 201.88924 * 12 10 9 14 14 O 1.21286 * 120.00040 * 359.97438 * 13 12 10 15 15 C 1.50698 * 120.00201 * 179.97438 * 13 12 10 16 16 C 1.52992 * 109.47592 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 C 1.55134 * 101.75147 * 20.26490 * 10 9 8 27 27 O 1.42229 * 125.63369 * 359.97438 * 8 6 5 28 28 H 1.09003 * 109.47043 * 300.00329 * 1 2 3 29 29 H 1.09000 * 109.47295 * 59.99862 * 1 2 3 30 30 H 1.08994 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47419 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46708 * 299.99926 * 3 2 1 33 33 H 1.09003 * 109.47266 * 59.99808 * 3 2 1 34 34 H 1.08997 * 109.47623 * 300.00109 * 4 2 1 35 35 H 1.08998 * 109.47299 * 60.00919 * 4 2 1 36 36 H 1.09007 * 109.46703 * 180.02562 * 4 2 1 37 37 H 1.08998 * 110.36671 * 63.50785 * 9 8 6 38 38 H 1.09004 * 110.34995 * 301.24556 * 9 8 6 39 39 H 0.96992 * 119.99793 * 21.88555 * 12 10 9 40 40 H 1.09002 * 109.47210 * 59.99599 * 15 13 12 41 41 H 1.09001 * 109.46665 * 299.99857 * 15 13 12 42 42 H 1.09002 * 109.47103 * 59.99616 * 16 15 13 43 43 H 1.08998 * 109.46862 * 300.00428 * 16 15 13 44 44 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 45 45 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 46 46 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 47 47 H 1.09006 * 110.81864 * 82.71571 * 26 10 9 48 48 H 1.09002 * 110.81752 * 206.05205 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5037 8 7 2.0679 -2.6656 2.4168 9 6 1.7478 -4.0754 2.7072 10 6 2.4095 -4.3613 4.0761 11 1 1.7521 -4.9556 4.7108 12 7 3.7059 -5.0215 3.9044 13 6 4.2349 -5.7407 4.9141 14 8 3.6378 -5.8409 5.9650 15 6 5.5682 -6.4204 4.7373 16 6 5.9366 -7.1631 6.0232 17 6 7.2900 -7.8537 5.8434 18 6 7.6531 -8.5847 7.1103 19 1 6.9852 -8.5596 7.9586 20 6 8.8376 -9.2864 7.1859 21 7 9.6507 -9.3173 6.1527 22 14 9.2873 -10.1931 8.7559 23 1 8.2120 -10.0035 9.7625 24 1 9.4420 -11.6410 8.4643 25 1 10.5651 -9.6561 9.2889 26 6 2.5866 -2.9296 4.6466 27 8 2.8885 -2.1587 3.4620 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7218 -1.2489 37 1 2.1683 -4.7256 1.9401 38 1 0.6685 -4.2135 2.7719 39 1 4.1835 -4.9411 3.0641 40 1 6.3309 -5.6730 4.5186 41 1 5.5076 -7.1300 3.9121 42 1 5.1740 -7.9105 6.2423 43 1 5.9971 -6.4532 6.8481 44 1 8.0528 -7.1066 5.6241 45 1 7.2289 -8.5636 5.0186 46 1 10.4841 -9.8107 6.2061 47 1 1.6644 -2.5809 5.1114 48 1 3.4133 -2.8949 5.3563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884866366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:20 Heat of formation + Delta-G solvation = -116.610240 kcal Electronic energy + Delta-G solvation = -28007.723622 eV Core-core repulsion = 23872.097810 eV Total energy + Delta-G solvation = -4135.625812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19828 -40.25801 -38.91702 -37.22406 -34.93187 -34.35633 -34.19614 -32.78649 -32.12084 -30.63450 -27.79478 -27.77629 -27.75827 -26.10913 -24.17618 -22.75352 -21.95807 -20.83068 -20.34349 -19.86457 -18.79557 -17.60028 -17.08876 -16.91101 -16.59305 -16.10252 -15.90308 -15.59363 -15.18693 -14.98370 -14.67086 -14.45696 -14.30729 -13.87709 -13.78156 -13.53299 -13.24005 -12.87006 -12.59560 -12.46956 -12.37605 -12.30024 -12.29004 -12.27624 -11.89803 -11.82270 -11.75365 -11.48634 -11.36138 -10.84327 -10.75935 -10.64448 -10.53735 -10.52116 -9.84116 -9.72849 -9.46508 -9.32121 -9.10974 -9.03643 -8.34032 -5.99341 -4.00840 1.13370 2.34054 2.57465 2.76945 2.95411 3.32582 3.40023 3.45424 3.81296 3.84900 4.25274 4.31296 4.36939 4.47868 4.50729 4.67345 4.86915 4.94248 5.00201 5.09078 5.15779 5.17525 5.22447 5.31154 5.36657 5.36918 5.40774 5.46269 5.60223 5.64764 5.65470 5.72313 5.88913 5.95817 6.03760 6.17194 6.22643 6.67771 6.85340 6.88185 7.12133 7.36741 7.68839 7.80935 7.83244 8.01095 8.24206 8.44742 9.06502 9.63327 11.12139 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.001782 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.347130 B =15708.648320 C =16042.872089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.132 3.868 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.349 6.349 6 C 0.689 3.311 7 O -0.552 6.552 8 N -0.476 5.476 9 C 0.112 3.888 10 C 0.114 3.886 11 H 0.128 0.872 12 N -0.731 5.731 13 C 0.517 3.483 14 O -0.533 6.533 15 C -0.139 4.139 16 C -0.095 4.095 17 C 0.019 3.981 18 C -0.518 4.518 19 H 0.057 0.943 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.015 3.985 27 O -0.144 6.144 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.405 0.595 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.259 0.741 47 H 0.085 0.915 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.245 20.243 -14.666 31.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.096 3.904 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.263 6.263 6 C 0.446 3.554 7 O -0.442 6.442 8 N -0.265 5.265 9 C -0.008 4.008 10 C 0.007 3.993 11 H 0.145 0.855 12 N -0.386 5.386 13 C 0.306 3.694 14 O -0.409 6.409 15 C -0.178 4.178 16 C -0.133 4.133 17 C -0.018 4.018 18 C -0.556 4.556 19 H 0.075 0.925 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.064 4.064 27 O -0.145 6.145 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.240 0.760 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.594 20.230 -14.340 31.604 hybrid contribution 0.594 -0.478 0.537 0.933 sum -19.000 19.753 -13.803 30.686 Atomic orbital electron populations 1.22527 0.93884 1.04985 1.02701 1.22181 0.94440 0.91771 0.82018 1.21856 1.02498 0.92243 1.03170 1.22531 1.01863 1.03336 0.96423 1.86427 1.70946 1.22661 1.46221 1.17088 0.77986 0.80795 0.79533 1.90990 1.41398 1.70711 1.41068 1.49277 1.51313 1.09561 1.16377 1.22825 1.01985 0.78772 0.97200 1.22575 0.87406 0.94220 0.95114 0.85455 1.46166 1.20873 1.53221 1.18291 1.21387 0.88085 0.77160 0.82751 1.90693 1.62351 1.60946 1.26882 1.21870 0.92216 1.00498 1.03251 1.21454 1.00135 0.98465 0.93238 1.19142 0.90236 0.95189 0.97214 1.21301 1.04240 1.30596 0.99478 0.92513 1.25027 0.96500 0.96661 0.96381 1.69971 1.11311 1.42601 1.29780 0.86536 0.78351 0.79484 0.83648 1.19692 1.21046 1.21043 1.24633 1.04148 0.90080 0.87518 1.91259 1.53490 1.55838 1.13953 0.92055 0.90910 0.89494 0.91280 0.90005 0.91380 0.89464 0.90926 0.91914 0.88396 0.88039 0.75955 0.89111 0.89107 0.92643 0.92662 0.96570 0.96564 0.93108 0.89667 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.37 37.16 0.31 -1.08 16 2 C 0.13 1.10 1.13 -90.62 -0.10 1.00 16 3 C -0.14 -0.85 8.85 37.15 0.33 -0.52 16 4 C -0.18 -1.45 8.37 37.15 0.31 -1.14 16 5 O -0.35 -3.89 9.81 -44.00 -0.43 -4.32 16 6 C 0.69 7.96 8.07 54.06 0.44 8.40 16 7 O -0.55 -6.81 12.21 -19.28 -0.24 -7.05 16 8 N -0.48 -4.95 4.00 -63.70 -0.25 -5.21 16 9 C 0.11 0.88 6.76 -2.62 -0.02 0.86 16 10 C 0.11 0.98 3.48 -65.90 -0.23 0.75 16 11 H 0.13 1.09 7.63 -51.93 -0.40 0.69 16 12 N -0.73 -7.33 5.17 -51.84 -0.27 -7.60 16 13 C 0.52 7.28 7.83 -10.99 -0.09 7.20 16 14 O -0.53 -9.37 15.67 5.55 0.09 -9.29 16 15 C -0.14 -2.12 5.70 -27.89 -0.16 -2.28 16 16 C -0.09 -1.96 4.44 -26.74 -0.12 -2.08 16 17 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 18 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 22 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.02 0.13 7.66 38.29 0.29 0.43 16 27 O -0.14 -1.58 12.24 -19.10 -0.23 -1.82 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.83 5.88 -51.93 -0.31 0.52 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.86 5.88 -51.93 -0.31 0.55 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.71 7.98 -51.93 -0.41 0.29 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.41 3.37 8.57 -40.82 -0.35 3.02 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 43 H 0.05 1.19 8.10 -51.93 -0.42 0.76 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.13 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -34.53 395.63 -7.31 -41.84 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.07 Total: -1.47 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.42 Total: -1.73 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.21 Total: -38.94 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.81 Total: -22.47 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.53 -7.31 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884866366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.769 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds