Wall clock time and date at job start Tue Mar 31 2020 15:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.52994 * 109.47189 * 239.99879 * 2 1 3 5 5 O 1.45200 * 109.46898 * 119.99613 * 2 1 3 6 6 C 1.34647 * 116.99636 * 60.00584 * 5 2 1 7 7 O 1.21507 * 120.00044 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99802 * 179.97438 * 6 5 2 9 9 O 1.41599 * 120.00117 * 179.97438 * 8 6 5 10 10 C 1.42902 * 114.00471 * 180.02562 * 9 8 6 11 11 C 1.50693 * 109.47521 * 180.02562 * 10 9 8 12 12 O 1.21298 * 119.99783 * 354.17011 * 11 10 9 13 13 N 1.34768 * 120.00370 * 174.18279 * 11 10 9 14 14 C 1.37103 * 119.99896 * 356.28075 * 13 11 10 15 15 H 1.08002 * 119.99635 * 232.18368 * 14 13 11 16 16 C 1.38944 * 119.99950 * 52.18335 * 14 13 11 17 17 N 1.31411 * 120.00000 * 26.88713 * 16 14 13 18 18 Si 1.86804 * 120.00168 * 206.88470 * 16 14 13 19 19 H 1.48493 * 109.46698 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46862 * 119.99988 * 18 16 14 21 21 H 1.48502 * 109.46847 * 239.99965 * 18 16 14 22 22 C 1.46507 * 120.00416 * 176.01263 * 13 11 10 23 23 C 1.54269 * 110.02781 * 237.90367 * 22 13 11 24 24 C 1.54964 * 104.15529 * 217.13112 * 23 22 13 25 25 C 1.54891 * 102.77807 * 37.89340 * 24 23 22 26 26 C 1.53872 * 110.03623 * 120.68580 * 22 13 11 27 27 H 1.08996 * 109.46980 * 300.00170 * 1 2 3 28 28 H 1.09004 * 109.46877 * 59.99788 * 1 2 3 29 29 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46739 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47133 * 299.99887 * 3 2 1 32 32 H 1.08996 * 109.46898 * 60.00312 * 3 2 1 33 33 H 1.09003 * 109.47061 * 300.00354 * 4 2 1 34 34 H 1.08997 * 109.47077 * 60.00058 * 4 2 1 35 35 H 1.08994 * 109.47390 * 179.97438 * 4 2 1 36 36 H 0.97005 * 120.00153 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.47313 * 59.99439 * 10 9 8 38 38 H 1.09008 * 109.46691 * 300.00029 * 10 9 8 39 39 H 0.96996 * 120.00170 * 184.89679 * 17 16 14 40 40 H 1.09001 * 110.01542 * 359.29429 * 22 13 11 41 41 H 1.08999 * 110.48818 * 335.77907 * 23 22 13 42 42 H 1.08996 * 110.48427 * 98.42899 * 23 22 13 43 43 H 1.08998 * 110.72448 * 279.57754 * 24 23 22 44 44 H 1.09005 * 110.92273 * 156.29943 * 24 23 22 45 45 H 1.09004 * 110.48250 * 203.40405 * 25 24 23 46 46 H 1.08998 * 110.60289 * 80.81828 * 25 24 23 47 47 H 1.09001 * 110.03314 * 238.57200 * 26 22 13 48 48 H 1.09005 * 110.03174 * 359.97438 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0680 -2.6657 2.4166 9 8 1.6871 -4.0200 2.5776 10 6 2.1980 -4.6304 3.7644 11 6 1.7336 -6.0624 3.8326 12 8 0.9495 -6.4855 3.0096 13 7 2.1894 -6.8729 4.8082 14 6 3.1329 -6.4176 5.6926 15 1 4.0366 -6.9854 5.8578 16 6 2.9264 -5.2258 6.3764 17 7 1.7033 -4.8070 6.6122 18 14 4.3873 -4.2188 6.9606 19 1 5.6468 -4.9027 6.5720 20 1 4.3423 -2.8727 6.3353 21 1 4.3340 -4.0805 8.4382 22 6 1.6723 -8.2385 4.9273 23 6 1.0562 -8.4500 6.3257 24 6 1.4341 -9.9081 6.6898 25 6 2.8673 -10.0434 6.1181 26 6 2.8231 -9.2513 4.7951 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1391 35 1 3.1300 -0.7209 -1.2494 36 1 2.6281 -2.2370 3.0826 37 1 1.8346 -4.0882 4.6373 38 1 3.2876 -4.6026 3.7471 39 1 1.5583 -3.9417 7.0259 40 1 0.9229 -8.4221 4.1574 41 1 1.4897 -7.7532 7.0430 42 1 -0.0269 -8.3343 6.2868 43 1 0.7577 -10.6138 6.2076 44 1 1.4341 -10.0520 7.7703 45 1 3.1050 -11.0901 5.9282 46 1 3.5955 -9.6056 6.8008 47 1 2.6318 -9.9270 3.9614 48 1 3.7663 -8.7268 4.6418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906756345.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:25 Heat of formation + Delta-G solvation = -107.197315 kcal Electronic energy + Delta-G solvation = -29424.144985 eV Core-core repulsion = 25288.927348 eV Total energy + Delta-G solvation = -4135.217637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.50226 -39.18891 -37.64472 -36.74068 -35.80077 -34.34600 -34.15014 -31.80494 -31.47233 -28.00373 -27.89191 -27.49131 -27.40372 -26.13146 -24.69653 -22.56530 -20.43200 -20.05086 -19.76149 -19.45403 -18.16220 -17.54806 -16.51437 -16.17540 -16.13355 -15.74388 -15.39339 -15.01446 -14.69813 -14.56281 -14.34710 -14.24792 -13.76640 -13.54471 -13.08272 -12.83792 -12.63020 -12.59442 -12.27697 -12.15870 -11.94440 -11.91521 -11.82974 -11.57071 -11.36714 -11.29706 -11.07155 -11.03036 -10.75385 -10.56645 -10.53382 -10.48210 -10.40517 -10.29812 -10.03093 -9.88043 -9.73821 -9.03013 -8.60712 -8.45182 -7.52841 -6.62553 -4.42233 1.48895 2.93060 3.08367 3.09206 3.12006 3.65075 3.82729 3.94348 4.56661 4.59123 4.65219 4.69327 4.83764 5.16554 5.30934 5.31650 5.36533 5.45816 5.49635 5.53364 5.60523 5.68360 5.81872 5.89208 5.91324 6.03562 6.06140 6.19388 6.24160 6.28533 6.29161 6.30245 6.35207 6.40582 6.46032 6.46353 6.50129 6.67641 6.85041 7.03535 7.19664 7.22989 7.29016 7.49726 7.81475 8.42696 8.67638 8.70455 9.35218 9.79036 10.37069 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.003104 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.129885 B = 9018.456262 C =10036.529891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.138 3.862 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.551 6.551 8 N -0.583 5.583 9 O -0.097 6.097 10 C 0.014 3.986 11 C 0.524 3.476 12 O -0.586 6.586 13 N -0.439 5.439 14 C -0.340 4.340 15 H 0.089 0.911 16 C 0.046 3.954 17 N -0.842 5.842 18 Si 0.893 3.107 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.278 1.278 22 C 0.135 3.865 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.127 4.127 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.409 0.591 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.272 0.728 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 7.036 -4.460 9.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.102 3.898 3 C -0.196 4.196 4 C -0.243 4.243 5 O -0.279 6.279 6 C 0.419 3.581 7 O -0.438 6.438 8 N -0.289 5.289 9 O -0.101 6.101 10 C -0.065 4.065 11 C 0.311 3.689 12 O -0.470 6.470 13 N -0.161 5.161 14 C -0.467 4.467 15 H 0.107 0.893 16 C -0.161 4.161 17 N -0.478 5.478 18 Si 0.718 3.282 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.203 1.203 22 C 0.032 3.968 23 C -0.159 4.159 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.166 4.166 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.249 0.751 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.488 6.619 -5.332 8.856 hybrid contribution 1.033 0.822 1.153 1.753 sum 3.522 7.442 -4.179 9.233 Atomic orbital electron populations 1.22545 0.93921 1.05479 1.02359 1.22086 0.94521 0.91248 0.81976 1.21857 1.02236 0.92485 1.03070 1.22539 1.01579 1.03855 0.96287 1.86262 1.72032 1.22790 1.46809 1.17195 0.79344 0.80215 0.81320 1.90910 1.40304 1.69929 1.42666 1.45485 1.55276 1.03948 1.24191 1.90719 1.71904 1.03602 1.43889 1.23305 0.99982 0.95007 0.88204 1.19309 0.82690 0.85662 0.81282 1.90601 1.38397 1.76397 1.41603 1.43276 1.37552 1.09853 1.25388 1.19312 0.98318 1.07627 1.21476 0.89319 1.25610 0.96549 0.99819 0.94169 1.70184 1.20175 1.19836 1.37560 0.86414 0.82701 0.80038 0.79085 1.18649 1.20074 1.20324 1.21635 0.94734 0.83295 0.97172 1.22604 0.99527 0.95707 0.98083 1.22455 0.96457 0.97511 0.99665 1.22257 0.97242 0.98612 0.97285 1.22402 1.00150 0.97323 0.96677 0.92095 0.91186 0.89047 0.91460 0.90120 0.91443 0.89060 0.91190 0.92126 0.75088 0.86989 0.90036 0.91743 0.90183 0.88899 0.92934 0.92477 0.92334 0.92886 0.91652 0.92698 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 8.37 37.16 0.31 -1.95 16 2 C 0.14 1.69 1.13 -90.62 -0.10 1.59 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.19 -2.22 8.37 37.15 0.31 -1.91 16 5 O -0.36 -5.46 9.94 -40.34 -0.40 -5.86 16 6 C 0.67 12.29 8.20 54.05 0.44 12.73 16 7 O -0.55 -11.67 12.29 -25.55 -0.31 -11.98 16 8 N -0.58 -10.88 6.39 27.60 0.18 -10.70 16 9 O -0.10 -2.25 10.65 -40.32 -0.43 -2.68 16 10 C 0.01 0.33 4.87 36.00 0.18 0.50 16 11 C 0.52 13.33 7.35 -10.99 -0.08 13.25 16 12 O -0.59 -16.63 15.87 -14.30 -0.23 -16.86 16 13 N -0.44 -10.37 2.37 -106.54 -0.25 -10.62 16 14 C -0.34 -7.78 6.80 -14.93 -0.10 -7.88 16 15 H 0.09 1.99 7.29 -52.49 -0.38 1.61 16 16 C 0.05 1.03 3.35 -17.47 -0.06 0.98 16 17 N -0.84 -20.19 11.59 55.50 0.64 -19.55 16 18 Si 0.89 17.23 29.63 -169.99 -5.04 12.19 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 C 0.14 2.88 3.29 -66.81 -0.22 2.66 16 23 C -0.12 -2.39 6.42 -25.03 -0.16 -2.55 16 24 C -0.12 -1.95 6.91 -24.70 -0.17 -2.12 16 25 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 26 C -0.13 -2.29 6.26 -25.62 -0.16 -2.45 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.41 5.88 -51.93 -0.31 1.10 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.41 6.29 8.65 -40.82 -0.35 5.94 16 37 H 0.11 2.57 5.42 -51.93 -0.28 2.29 16 38 H 0.08 1.68 7.79 -51.92 -0.40 1.28 16 39 H 0.27 6.15 8.32 -40.82 -0.34 5.81 16 40 H 0.08 1.84 6.95 -51.93 -0.36 1.47 16 41 H 0.09 2.07 7.02 -51.93 -0.36 1.70 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -29.75 383.04 -7.47 -37.23 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -7.75 Total: 13.06 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 0.34 Total: 10.00 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.57 Total: -40.87 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.37 Total: -37.38 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.04 Total: 12.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.75 -7.47 -37.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906756345.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.971 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds