Wall clock time and date at job start Tue Mar 31 2020 15:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 C 1.53002 * 109.46578 * 240.00069 * 2 1 3 5 5 O 1.45195 * 109.47303 * 120.00250 * 2 1 3 6 6 C 1.34634 * 117.00432 * 59.99364 * 5 2 1 7 7 O 1.21517 * 120.00022 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00474 * 179.97438 * 6 5 2 9 9 O 1.41600 * 120.00100 * 180.02562 * 8 6 5 10 10 C 1.42899 * 113.99938 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.46933 * 180.02562 * 10 9 8 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.55709 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 C 1.50699 * 109.44585 * 181.23845 * 16 15 14 18 18 H 1.08005 * 120.00131 * 239.80327 * 17 16 15 19 19 C 1.37878 * 120.00094 * 59.78830 * 17 16 15 20 20 N 1.31516 * 119.99537 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47167 * 90.00227 * 21 19 17 23 23 H 1.48498 * 109.47154 * 210.00526 * 21 19 17 24 24 H 1.48500 * 109.46853 * 330.00443 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 26 26 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 27 27 H 1.09002 * 109.47005 * 299.99931 * 1 2 3 28 28 H 1.08995 * 109.46967 * 59.99813 * 1 2 3 29 29 H 1.08994 * 109.47053 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46864 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47015 * 300.00010 * 3 2 1 32 32 H 1.09002 * 109.47141 * 60.00152 * 3 2 1 33 33 H 1.08994 * 109.47034 * 299.99529 * 4 2 1 34 34 H 1.08995 * 109.47375 * 60.00368 * 4 2 1 35 35 H 1.09004 * 109.46643 * 180.02562 * 4 2 1 36 36 H 0.96998 * 119.99759 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.47044 * 60.00003 * 10 9 8 38 38 H 1.08997 * 109.47212 * 300.00512 * 10 9 8 39 39 H 1.09002 * 109.58751 * 353.41659 * 14 13 11 40 40 H 1.08996 * 109.58750 * 113.69843 * 14 13 11 41 41 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 42 42 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 43 43 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 44 44 H 0.97008 * 119.99764 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.49876 * 178.74890 * 25 16 15 46 46 H 1.09005 * 109.52615 * 58.67140 * 25 16 15 47 47 H 1.08998 * 109.58787 * 246.16207 * 26 13 11 48 48 H 1.09007 * 109.58600 * 6.44520 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4166 9 8 1.6880 -4.0203 2.5771 10 6 2.1999 -4.6310 3.7632 11 6 1.7363 -6.0633 3.8310 12 8 1.0361 -6.5164 2.9505 13 7 2.0990 -6.8406 4.8707 14 6 1.6544 -8.2386 4.9510 15 6 0.9760 -8.4663 6.3055 16 6 1.9282 -8.0411 7.4260 17 6 1.2757 -8.2920 8.7611 18 1 1.1087 -7.4716 9.4433 19 6 0.8918 -9.5691 9.1116 20 7 1.0955 -10.5682 8.2809 21 14 0.0825 -9.8801 10.7661 22 1 -1.3899 -9.7419 10.6307 23 1 0.4105 -11.2530 11.2273 24 1 0.5834 -8.8926 11.7556 25 6 2.2521 -6.5516 7.2888 26 6 2.9455 -6.3055 5.9458 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 2.6278 -2.2369 3.0828 37 1 1.8366 -4.0894 4.6366 38 1 3.2894 -4.6026 3.7455 39 1 0.9459 -8.4435 4.1484 40 1 2.5145 -8.9015 4.8571 41 1 0.0642 -7.8716 6.3603 42 1 0.7293 -9.5223 6.4159 43 1 2.8488 -8.6207 7.3571 44 1 0.8257 -11.4667 8.5276 45 1 2.9124 -6.2466 8.1006 46 1 1.3296 -5.9726 7.3332 47 1 3.9115 -6.8103 5.9358 48 1 3.0909 -5.2353 5.7981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907289629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:11 Heat of formation + Delta-G solvation = -108.202336 kcal Electronic energy + Delta-G solvation = -28348.232518 eV Core-core repulsion = 24212.971299 eV Total energy + Delta-G solvation = -4135.261218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.92735 -39.95660 -38.18865 -37.00798 -36.41847 -34.52402 -33.68581 -32.33587 -31.22370 -30.55521 -27.89761 -27.74468 -27.67058 -26.00145 -23.12897 -23.06476 -22.33634 -20.68454 -20.03337 -18.80686 -18.42337 -18.17897 -16.81788 -16.69811 -16.46722 -16.24174 -15.96140 -15.60642 -14.87538 -14.70614 -14.60602 -14.19285 -13.92666 -13.69934 -13.45210 -12.98297 -12.90014 -12.84937 -12.65433 -12.52944 -12.32445 -12.23105 -12.22362 -11.92621 -11.90668 -11.61961 -11.36497 -11.22841 -10.98150 -10.73121 -10.67640 -10.51564 -10.29557 -10.16522 -9.70925 -9.65394 -9.27952 -9.26528 -9.01276 -8.44121 -8.16256 -6.07725 -4.14744 0.83344 2.62412 2.70291 2.94930 3.25502 3.33035 3.34860 3.53634 4.23305 4.36526 4.37103 4.42048 4.48810 4.56105 4.76503 4.85543 5.13178 5.20118 5.20639 5.21646 5.22391 5.36490 5.44430 5.54981 5.60929 5.65375 5.75251 5.90780 5.98365 6.01400 6.08282 6.15481 6.28317 6.35460 6.47349 6.52012 6.69391 6.84234 6.94236 7.09520 7.23734 7.62573 7.67832 7.84510 7.98904 8.19085 8.30672 8.34080 8.88456 9.50878 10.97731 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.001962 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.951860 B =14269.191848 C =14525.374443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.139 3.861 3 C -0.140 4.140 4 C -0.186 4.186 5 O -0.359 6.359 6 C 0.668 3.332 7 O -0.544 6.544 8 N -0.585 5.585 9 O -0.086 6.086 10 C 0.009 3.991 11 C 0.521 3.479 12 O -0.527 6.527 13 N -0.593 5.593 14 C 0.111 3.889 15 C -0.124 4.124 16 C 0.048 3.952 17 C -0.515 4.515 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.125 4.125 26 C 0.103 3.897 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.413 0.587 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.106 0.894 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 21.450 -12.605 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.102 3.898 3 C -0.197 4.197 4 C -0.244 4.244 5 O -0.275 6.275 6 C 0.421 3.579 7 O -0.430 6.430 8 N -0.293 5.293 9 O -0.090 6.090 10 C -0.072 4.072 11 C 0.305 3.695 12 O -0.403 6.403 13 N -0.328 5.328 14 C -0.010 4.010 15 C -0.162 4.162 16 C 0.030 3.970 17 C -0.553 4.553 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.163 4.163 26 C -0.020 4.020 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.124 0.876 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.210 20.707 -13.714 25.377 hybrid contribution -0.027 -0.094 1.613 1.616 sum 5.184 20.614 -12.101 24.459 Atomic orbital electron populations 1.22552 0.93723 1.05436 1.02670 1.22172 0.94625 0.91311 0.81654 1.21872 1.02319 0.92209 1.03306 1.22550 1.01667 1.03755 0.96380 1.86265 1.71857 1.22229 1.47169 1.17210 0.79178 0.80461 0.81011 1.90960 1.39804 1.69898 1.42309 1.45375 1.56223 1.02714 1.24979 1.90803 1.71391 1.05088 1.41737 1.22937 1.00728 0.94116 0.89379 1.19498 0.81388 0.85888 0.82732 1.90758 1.37324 1.74120 1.38134 1.48148 1.50500 1.13143 1.21006 1.21971 0.99442 0.78495 1.01079 1.22053 0.98148 1.04933 0.91087 1.18648 0.95475 0.88842 0.94073 1.21158 1.39610 0.93398 1.01158 0.92680 1.24972 0.95732 0.96256 0.97036 1.69836 1.47474 0.99955 1.35541 0.86600 0.79752 0.77479 0.84192 1.20709 1.21227 1.19983 1.22018 0.99435 1.01517 0.93351 1.21945 0.94057 0.97505 0.88477 0.91979 0.90909 0.89151 0.91359 0.89899 0.91331 0.89160 0.90910 0.92016 0.74610 0.88534 0.88741 0.90332 0.91866 0.94200 0.87563 0.95363 0.92866 0.91780 0.92722 0.91239 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 8.37 37.16 0.31 -1.34 16 2 C 0.14 1.20 1.13 -90.62 -0.10 1.09 16 3 C -0.14 -0.78 8.85 37.16 0.33 -0.45 16 4 C -0.19 -1.62 8.37 37.16 0.31 -1.31 16 5 O -0.36 -3.74 9.94 -40.31 -0.40 -4.14 16 6 C 0.67 8.74 8.20 54.06 0.44 9.19 16 7 O -0.54 -8.95 12.29 -25.56 -0.31 -9.27 16 8 N -0.59 -6.73 6.39 27.60 0.18 -6.55 16 9 O -0.09 -1.30 10.64 -40.34 -0.43 -1.73 16 10 C 0.01 0.11 5.05 36.00 0.18 0.29 16 11 C 0.52 8.81 7.78 -10.98 -0.09 8.72 16 12 O -0.53 -11.25 15.91 -14.35 -0.23 -11.48 16 13 N -0.59 -9.92 2.98 -172.80 -0.51 -10.43 16 14 C 0.11 2.12 6.43 -3.71 -0.02 2.10 16 15 C -0.12 -2.75 5.16 -26.59 -0.14 -2.89 16 16 C 0.05 1.08 2.06 -91.72 -0.19 0.90 16 17 C -0.52 -13.24 8.56 -34.44 -0.29 -13.53 16 18 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 20 N -0.89 -24.19 11.30 55.43 0.63 -23.56 16 21 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.13 -2.21 5.30 -26.64 -0.14 -2.35 16 26 C 0.10 1.44 6.34 -3.74 -0.02 1.42 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.41 3.00 8.65 -40.82 -0.35 2.65 16 37 H 0.10 0.92 7.69 -51.93 -0.40 0.52 16 38 H 0.09 0.82 7.94 -51.93 -0.41 0.41 16 39 H 0.08 1.56 7.00 -51.93 -0.36 1.20 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.11 2.66 6.03 -51.93 -0.31 2.35 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.68 5.93 -51.92 -0.31 0.37 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -33.20 384.12 -7.63 -40.83 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.80 Total: 1.65 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.48 Total: 3.37 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.29 Total: -40.54 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.37 Total: -26.61 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.20 -7.63 -40.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907289629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.368 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds