Wall clock time and date at job start Tue Mar 31 2020 15:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47494 * 2 1 4 4 C 1.37618 * 127.15611 * 84.66862 * 3 2 1 5 5 C 1.47775 * 126.46941 * 359.97438 * 4 3 2 6 6 C 1.39961 * 120.20546 * 179.72047 * 5 4 3 7 7 C 1.38562 * 117.87718 * 180.28862 * 6 5 4 8 8 C 1.38791 * 118.09137 * 359.96286 * 7 6 5 9 9 N 1.31957 * 120.11102 * 0.03864 * 8 7 6 10 10 N 1.28351 * 122.32959 * 359.97438 * 9 8 7 11 11 N 1.31285 * 107.05961 * 180.22743 * 4 3 2 12 12 N 1.28515 * 109.91426 * 359.56735 * 11 4 3 13 13 C 1.31477 * 110.06843 * 0.44525 * 12 11 4 14 14 N 1.38296 * 126.36615 * 179.76780 * 13 12 11 15 15 C 1.46850 * 110.99820 * 272.27530 * 14 13 12 16 16 C 1.53045 * 109.52366 * 185.83876 * 15 14 13 17 17 C 1.53114 * 109.27591 * 300.82332 * 16 15 14 18 18 C 1.53119 * 109.16586 * 57.65125 * 17 16 15 19 19 H 1.09000 * 109.49750 * 62.28419 * 18 17 16 20 20 C 1.50701 * 109.50128 * 182.40243 * 18 17 16 21 21 H 1.07997 * 119.99400 * 119.80648 * 20 18 17 22 22 C 1.37870 * 120.00452 * 299.80479 * 20 18 17 23 23 N 1.31518 * 120.00079 * 0.02562 * 22 20 18 24 24 Si 1.86792 * 120.00170 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47518 * 90.00083 * 24 22 20 26 26 H 1.48498 * 109.47165 * 209.99674 * 24 22 20 27 27 H 1.48500 * 109.47381 * 329.99803 * 24 22 20 28 28 C 1.46846 * 111.00207 * 36.48164 * 14 13 12 29 29 H 1.08997 * 109.47202 * 305.11400 * 1 2 3 30 30 H 1.09004 * 109.46750 * 65.11458 * 1 2 3 31 31 H 1.09000 * 109.47365 * 185.11120 * 1 2 3 32 32 H 1.09000 * 109.47509 * 240.00158 * 2 1 3 33 33 H 1.09006 * 109.47004 * 119.99975 * 2 1 3 34 34 H 1.07996 * 121.05712 * 0.25179 * 6 5 4 35 35 H 1.08007 * 120.95647 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.94572 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.46304 * 305.84979 * 15 14 13 38 38 H 1.08995 * 109.46210 * 65.82194 * 15 14 13 39 39 H 1.08999 * 109.50336 * 180.87975 * 16 15 14 40 40 H 1.09003 * 109.53490 * 60.77685 * 16 15 14 41 41 H 1.09003 * 109.51964 * 297.74505 * 17 16 15 42 42 H 1.09007 * 109.57290 * 177.59132 * 17 16 15 43 43 H 0.97002 * 120.00081 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.46420 * 294.18240 * 28 14 13 45 45 H 1.08998 * 109.45957 * 54.16123 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1994 2.1988 1.0921 5 6 1.9358 1.8501 2.5037 6 6 2.1731 2.7866 3.5164 7 6 1.9150 2.4065 4.8237 8 6 1.4371 1.1231 5.0490 9 7 1.2411 0.3022 4.0346 10 7 1.4769 0.6433 2.8200 11 7 2.6453 3.3488 0.6425 12 7 2.7622 3.3032 -0.6366 13 6 2.3888 2.1238 -1.0819 14 7 2.3751 1.7126 -2.4023 15 6 1.1031 2.0603 -3.0485 16 6 1.0658 1.4647 -4.4578 17 6 2.2404 2.0159 -5.2708 18 6 3.5503 1.6823 -4.5513 19 1 3.6669 0.6002 -4.4913 20 6 4.7079 2.2724 -5.3146 21 1 5.3547 2.9957 -4.8404 22 6 4.9414 1.8890 -6.6182 23 7 4.1535 1.0086 -7.1959 24 14 6.3768 2.6200 -7.5639 25 1 7.5830 1.7778 -7.3620 26 1 6.0434 2.6684 -9.0102 27 1 6.6451 3.9951 -7.0716 28 6 3.5155 2.2716 -3.1395 29 1 -0.3633 0.5911 0.8406 30 1 -0.3633 0.4325 -0.9323 31 1 -0.3634 -1.0236 0.0916 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.5460 3.7736 3.2863 35 1 2.0808 3.0895 5.6438 36 1 1.2255 0.7957 6.0561 37 1 0.2764 1.6588 -2.4626 38 1 1.0116 3.1447 -3.1100 39 1 0.1283 1.7361 -4.9429 40 1 1.1432 0.3791 -4.3969 41 1 2.1421 3.0973 -5.3655 42 1 2.2434 1.5622 -6.2619 43 1 4.3180 0.7385 -8.1129 44 1 3.4126 3.3550 -3.2005 45 1 4.4408 2.0233 -2.6197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908852491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:12 Heat of formation + Delta-G solvation = 143.934795 kcal Electronic energy + Delta-G solvation = -28095.878001 eV Core-core repulsion = 24343.444691 eV Total energy + Delta-G solvation = -3752.433310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.90796 -41.16758 -38.39411 -35.71150 -34.23883 -33.62231 -33.16736 -31.85748 -30.52419 -30.03034 -28.92962 -25.33258 -25.05908 -25.01967 -24.02622 -23.64719 -21.77285 -21.31558 -20.55884 -18.70372 -17.92193 -17.52142 -17.18238 -16.53215 -16.38436 -15.96648 -15.47411 -15.13103 -14.58330 -14.39253 -14.19669 -14.03176 -13.64432 -13.55321 -13.14172 -12.88797 -12.61999 -12.55707 -12.38626 -11.90798 -11.69855 -11.46482 -11.23005 -10.97739 -10.91941 -10.80854 -10.73923 -10.66574 -10.62697 -10.23601 -10.14732 -10.01011 -9.92805 -9.59630 -9.27444 -9.05976 -8.73994 -8.36704 -8.09659 -6.01829 -4.07604 0.14479 0.40752 1.86785 2.21581 2.75382 3.26140 3.30940 3.34128 3.37696 3.41815 3.95228 4.03468 4.13111 4.33844 4.44781 4.52021 4.64458 4.75444 4.97479 5.10472 5.14812 5.28939 5.31670 5.38300 5.49181 5.52811 5.61627 5.64045 5.72090 5.78185 5.85012 5.96668 6.06930 6.15410 6.32210 6.35097 6.50839 6.59717 6.68605 6.82236 7.00189 7.24766 7.34733 7.62612 7.72008 7.97316 8.08387 8.22960 8.39875 8.69933 8.95594 9.57163 11.04546 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.002839 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.582640 B = 9859.884702 C =10452.843789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 N -0.447 5.447 4 C 0.189 3.811 5 C 0.161 3.839 6 C -0.082 4.082 7 C -0.112 4.112 8 C 0.038 3.962 9 N -0.235 5.235 10 N -0.235 5.235 11 N -0.251 5.251 12 N -0.309 5.309 13 C 0.387 3.613 14 N -0.465 5.465 15 C 0.072 3.928 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.057 3.943 19 H 0.036 0.964 20 C -0.514 4.514 21 H 0.056 0.944 22 C 0.064 3.936 23 N -0.889 5.889 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 C 0.081 3.919 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.096 0.904 43 H 0.260 0.740 44 H 0.046 0.954 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -0.799 21.521 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.016 4.016 3 N -0.138 5.138 4 C -0.076 4.076 5 C 0.016 3.984 6 C -0.112 4.112 7 C -0.141 4.141 8 C -0.127 4.127 9 N -0.076 5.076 10 N -0.080 5.080 11 N -0.096 5.096 12 N -0.156 5.156 13 C 0.032 3.968 14 N -0.191 5.191 15 C -0.055 4.055 16 C -0.154 4.154 17 C -0.152 4.152 18 C 0.038 3.962 19 H 0.054 0.946 20 C -0.553 4.553 21 H 0.075 0.925 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.044 4.044 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.193 0.807 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.984 -1.560 20.764 22.678 hybrid contribution 0.731 1.221 0.038 1.424 sum -8.252 -0.338 20.802 22.382 Atomic orbital electron populations 1.22043 0.93865 1.03366 1.02323 1.22047 0.95876 0.77957 1.05733 1.46432 1.48069 1.13931 1.05411 1.21598 1.08868 0.89997 0.87168 1.19729 0.96417 0.92545 0.89745 1.22379 0.95657 1.01320 0.91862 1.22421 0.96545 0.97488 0.97676 1.24414 0.95507 0.91725 1.01024 1.73040 1.11228 1.28893 0.94471 1.73287 1.08832 1.13874 1.12034 1.74272 1.14507 1.16736 1.04104 1.74837 1.22551 1.15866 1.02370 1.22819 0.97830 0.86680 0.89511 1.58873 1.06812 1.58598 0.94829 1.22198 0.87878 0.99048 0.96378 1.21715 0.99968 1.00873 0.92807 1.21716 0.93135 0.98739 1.01620 1.18720 0.93602 0.96931 0.86991 0.94605 1.21077 1.11871 1.24871 0.97432 0.92531 1.24907 0.96346 0.94934 0.97528 1.69879 1.37648 1.31857 1.13379 0.86590 0.82702 0.79671 0.79036 1.20707 1.21250 1.19865 1.22455 0.88177 0.97700 0.96097 0.92282 0.92159 0.90148 0.87717 0.87541 0.81862 0.82472 0.80690 0.92194 0.93827 0.92539 0.91721 0.94542 0.88610 0.92981 0.93521 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.23 37.15 0.38 -1.35 16 2 C 0.11 1.34 6.21 -4.05 -0.03 1.31 16 3 N -0.45 -6.96 2.83 -114.73 -0.32 -7.28 16 4 C 0.19 2.89 7.83 -153.73 -1.20 1.69 16 5 C 0.16 1.99 6.83 -82.85 -0.57 1.42 16 6 C -0.08 -0.75 9.84 -38.82 -0.38 -1.13 16 7 C -0.11 -0.68 10.20 -39.26 -0.40 -1.08 16 8 C 0.04 0.26 11.31 -17.29 -0.20 0.07 16 9 N -0.24 -2.52 11.50 30.59 0.35 -2.17 16 10 N -0.24 -2.88 8.97 33.30 0.30 -2.59 16 11 N -0.25 -4.38 11.93 32.59 0.39 -3.99 16 12 N -0.31 -6.04 11.68 30.28 0.35 -5.69 16 13 C 0.39 7.04 6.69 -319.09 -2.13 4.90 16 14 N -0.47 -8.71 4.62 -174.60 -0.81 -9.52 16 15 C 0.07 1.23 5.39 -3.83 -0.02 1.21 16 16 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 17 C -0.11 -2.56 5.03 -26.61 -0.13 -2.70 16 18 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 19 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -24.67 11.36 55.43 0.63 -24.04 16 24 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.08 1.75 4.31 -3.84 -0.02 1.74 16 29 H 0.06 0.69 7.94 -51.93 -0.41 0.28 16 30 H 0.06 0.69 6.87 -51.93 -0.36 0.33 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.11 1.29 6.62 -51.93 -0.34 0.94 16 34 H 0.16 1.34 7.93 -52.49 -0.42 0.92 16 35 H 0.16 0.36 8.06 -52.48 -0.42 -0.07 16 36 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.06 0.90 6.83 -51.93 -0.35 0.55 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 45 H 0.06 1.43 8.10 -51.93 -0.42 1.01 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -31.05 367.46 -10.43 -41.48 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.39 Total: -0.33 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -5.46 Total: -7.48 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.89 Total: -55.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.05 -10.43 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908852491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.415 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds