Wall clock time and date at job start Tue Mar 31 2020 15:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99902 * 2 1 4 4 C 1.50699 * 119.99779 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47319 * 95.69957 * 4 2 1 6 6 C 1.37609 * 127.15277 * 266.14123 * 5 4 2 7 7 C 1.47772 * 126.47099 * 359.97438 * 6 5 4 8 8 C 1.39962 * 120.20320 * 179.97438 * 7 6 5 9 9 C 1.38572 * 117.87786 * 179.72825 * 8 7 6 10 10 C 1.38789 * 118.08511 * 0.25962 * 9 8 7 11 11 N 1.31952 * 120.11515 * 359.97438 * 10 9 8 12 12 N 1.28351 * 122.33044 * 0.02562 * 11 10 9 13 13 N 1.31290 * 107.05999 * 180.25712 * 6 5 4 14 14 N 1.28519 * 109.91260 * 359.62056 * 13 6 5 15 15 C 1.31483 * 110.06828 * 0.39057 * 14 13 6 16 16 N 1.38294 * 126.36889 * 179.78731 * 15 14 13 17 17 C 1.46906 * 110.99814 * 247.25642 * 16 15 14 18 18 C 1.46904 * 110.99810 * 11.20546 * 16 15 14 19 19 H 1.08992 * 109.46865 * 55.00370 * 18 16 15 20 20 C 1.52997 * 109.46989 * 295.00337 * 18 16 15 21 21 C 1.50700 * 109.47106 * 175.00020 * 18 16 15 22 22 H 1.08000 * 120.00030 * 0.02562 * 21 18 16 23 23 C 1.37876 * 120.00028 * 179.97438 * 21 18 16 24 24 N 1.31510 * 120.00099 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 120.00128 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.46858 * 60.00093 * 25 23 21 27 27 H 1.48495 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47006 * 300.00728 * 25 23 21 29 29 H 1.08001 * 120.00420 * 5.20891 * 1 2 3 30 30 H 1.08009 * 119.99898 * 185.21032 * 1 2 3 31 31 H 1.09001 * 109.47214 * 270.00238 * 3 2 1 32 32 H 1.09001 * 109.47020 * 30.00396 * 3 2 1 33 33 H 1.09002 * 109.46578 * 150.00071 * 3 2 1 34 34 H 1.09002 * 109.47470 * 335.69574 * 4 2 1 35 35 H 1.08999 * 109.46882 * 215.69705 * 4 2 1 36 36 H 1.08008 * 121.06095 * 0.02562 * 8 7 6 37 37 H 1.07996 * 120.95451 * 180.27599 * 9 8 7 38 38 H 1.08001 * 119.94099 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47212 * 61.22525 * 17 16 15 40 40 H 1.09009 * 109.46910 * 181.22108 * 17 16 15 41 41 H 1.08995 * 109.47096 * 301.22026 * 17 16 15 42 42 H 1.09004 * 109.46644 * 179.97438 * 20 18 16 43 43 H 1.09003 * 109.47468 * 299.99279 * 20 18 16 44 44 H 1.08996 * 109.47423 * 60.00067 * 20 18 16 45 45 H 0.96999 * 120.00247 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 2.4264 -1.6589 -1.3751 6 6 1.7220 -2.4654 -2.2393 7 6 0.4422 -3.1484 -1.9574 8 6 -0.1635 -3.9418 -2.9386 9 6 -1.3599 -4.5646 -2.6206 10 6 -1.8864 -4.3598 -1.3530 11 7 -1.2515 -3.5911 -0.4886 12 7 -0.1431 -3.0094 -0.7722 13 7 2.4046 -2.5185 -3.3596 14 7 3.4681 -1.8040 -3.2583 15 6 3.5328 -1.2580 -2.0640 16 7 4.5363 -0.4306 -1.5938 17 6 5.2993 -1.0849 -0.5225 18 6 5.4216 -0.0041 -2.6858 19 1 4.8289 0.4604 -3.4737 20 6 6.1571 -1.2209 -3.2508 21 6 6.4249 0.9898 -2.1598 22 1 6.4070 1.2757 -1.1185 23 6 7.3664 1.5334 -3.0078 24 7 7.3887 1.1850 -4.2757 25 14 8.6105 2.7649 -2.3557 26 1 9.4177 2.1317 -1.2820 27 1 9.5054 3.1962 -3.4594 28 1 7.8970 3.9461 -1.8072 29 1 -0.5401 0.9314 -0.0849 30 1 -0.5400 -0.9315 0.0849 31 1 2.2451 1.6198 -1.0277 32 1 1.4744 2.0647 0.5139 33 1 3.0159 1.1747 0.5138 34 1 1.4340 -2.0883 0.4220 35 1 2.9678 -1.2027 0.5991 36 1 0.2896 -4.0685 -3.9108 37 1 -1.8677 -5.1916 -3.3385 38 1 -2.8175 -4.8304 -1.0735 39 1 5.7693 -1.9885 -0.9108 40 1 6.0680 -0.4043 -0.1561 41 1 4.6270 -1.3472 0.2943 42 1 6.8137 -0.9043 -4.0613 43 1 6.7500 -1.6854 -2.4629 44 1 5.4315 -1.9397 -3.6313 45 1 8.0508 1.5676 -4.8723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909307421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:18 Heat of formation + Delta-G solvation = 188.941316 kcal Electronic energy + Delta-G solvation = -28748.575749 eV Core-core repulsion = 24998.094069 eV Total energy + Delta-G solvation = -3750.481681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63225 -41.02063 -37.44023 -36.63799 -33.70258 -33.48232 -33.17211 -32.45648 -29.36066 -28.74555 -27.36230 -26.87068 -25.54826 -25.21944 -24.92270 -24.40621 -21.71656 -21.24626 -19.70728 -18.69619 -17.61593 -17.23386 -16.82867 -16.41098 -16.08007 -15.76628 -15.34727 -14.96400 -14.62172 -14.57879 -14.09303 -13.93198 -13.69072 -13.42498 -13.29354 -12.89095 -12.47769 -12.15480 -11.76426 -11.68596 -11.55550 -11.42326 -11.21853 -11.03884 -10.92125 -10.78953 -10.74933 -10.54045 -10.51993 -10.31013 -10.10477 -10.01933 -9.77331 -9.74286 -9.06649 -8.89848 -8.83874 -8.42528 -7.47632 -6.05693 -4.13240 0.31631 0.54276 1.92362 2.20913 2.79637 3.06855 3.28847 3.34302 3.35537 3.48361 3.54281 4.12195 4.28175 4.31841 4.47538 4.57672 4.66838 4.76019 4.83079 4.85550 5.25311 5.28134 5.34609 5.42639 5.54188 5.65272 5.74350 5.82377 5.89475 5.98942 6.00169 6.04665 6.08995 6.21631 6.34560 6.41848 6.68406 6.69539 6.87948 6.94269 7.08261 7.24328 7.41509 7.59226 7.70499 7.92105 8.26315 8.36167 8.40577 8.86803 9.09789 9.51397 11.00478 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.003553 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.885848 B = 7879.742147 C = 8772.294199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.140 4.140 3 C -0.113 4.113 4 C 0.141 3.859 5 N -0.458 5.458 6 C 0.172 3.828 7 C 0.171 3.829 8 C -0.085 4.085 9 C -0.112 4.112 10 C 0.033 3.967 11 N -0.237 5.237 12 N -0.242 5.242 13 N -0.249 5.249 14 N -0.306 5.306 15 C 0.405 3.595 16 N -0.449 5.449 17 C 0.032 3.968 18 C 0.229 3.771 19 H 0.051 0.949 20 C -0.179 4.179 21 C -0.515 4.515 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.884 5.884 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.038 0.962 40 H 0.098 0.902 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.022 0.978 44 H 0.048 0.952 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.456 -9.774 7.380 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.170 4.170 4 C 0.019 3.981 5 N -0.152 5.152 6 C -0.092 4.092 7 C 0.026 3.974 8 C -0.115 4.115 9 C -0.141 4.141 10 C -0.132 4.132 11 N -0.078 5.078 12 N -0.087 5.087 13 N -0.093 5.093 14 N -0.153 5.153 15 C 0.050 3.950 16 N -0.173 5.173 17 C -0.115 4.115 18 C 0.125 3.875 19 H 0.068 0.932 20 C -0.238 4.238 21 C -0.553 4.553 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.522 5.522 25 Si 0.727 3.273 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.181 0.819 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.086 -8.958 7.572 19.909 hybrid contribution 0.585 -0.111 -0.207 0.631 sum -15.501 -9.070 7.365 19.411 Atomic orbital electron populations 1.24022 0.95360 1.02523 0.99132 1.21827 0.95417 0.95296 1.01523 1.20807 0.99881 0.93283 1.03009 1.21106 1.01234 0.96551 0.79161 1.46226 1.17281 1.37897 1.13805 1.21467 0.96294 1.01847 0.89624 1.19736 0.91388 0.93957 0.92301 1.22380 0.94584 0.93539 1.00999 1.22395 0.95325 0.98472 0.97899 1.24341 1.00990 0.96340 0.91483 1.72998 1.01471 1.04811 1.28487 1.73179 1.03915 1.15695 1.15938 1.74271 1.01586 1.15898 1.17581 1.75034 1.12759 1.11523 1.16024 1.23272 0.89815 0.93188 0.88677 1.59263 1.12516 1.30541 1.14956 1.22443 0.97685 0.99075 0.92283 1.19393 0.88999 0.93088 0.86015 0.93152 1.22534 1.01147 0.98177 1.01925 1.20970 1.13849 1.24312 0.96205 0.91803 1.24879 0.97462 0.96654 0.94798 1.69904 1.35523 1.43039 1.03706 0.86547 0.80946 0.81473 0.78337 1.20277 1.21287 1.20200 0.88582 0.87003 0.91019 0.92378 0.91093 0.86719 0.88426 0.81919 0.82648 0.80885 0.94313 0.88382 0.93365 0.89173 0.95934 0.93285 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 13.82 29.02 0.40 -1.86 16 2 C -0.14 -1.98 5.63 -101.07 -0.57 -2.55 16 3 C -0.11 -1.63 10.03 36.00 0.36 -1.27 16 4 C 0.14 2.05 5.81 -5.19 -0.03 2.02 16 5 N -0.46 -7.98 2.81 -116.01 -0.33 -8.31 16 6 C 0.17 2.97 7.83 -153.74 -1.20 1.76 16 7 C 0.17 2.38 6.83 -82.85 -0.57 1.81 16 8 C -0.08 -0.90 9.84 -38.81 -0.38 -1.28 16 9 C -0.11 -0.81 10.20 -39.25 -0.40 -1.21 16 10 C 0.03 0.26 11.31 -17.30 -0.20 0.07 16 11 N -0.24 -2.74 11.50 30.59 0.35 -2.39 16 12 N -0.24 -3.23 6.99 33.30 0.23 -3.00 16 13 N -0.25 -4.91 11.93 32.59 0.39 -4.52 16 14 N -0.31 -6.79 8.99 30.28 0.27 -6.52 16 15 C 0.41 8.30 6.69 -319.09 -2.13 6.16 16 16 N -0.45 -9.40 4.77 -176.13 -0.84 -10.24 16 17 C 0.03 0.58 8.68 60.07 0.52 1.10 16 18 C 0.23 5.70 2.06 -68.86 -0.14 5.56 16 19 H 0.05 1.44 8.09 -51.93 -0.42 1.02 16 20 C -0.18 -4.42 8.26 37.16 0.31 -4.12 16 21 C -0.51 -13.41 7.90 -34.44 -0.27 -13.68 16 22 H 0.06 1.61 6.76 -52.49 -0.35 1.25 16 23 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 24 N -0.88 -24.82 11.32 55.43 0.63 -24.19 16 25 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H 0.10 1.15 8.05 -52.49 -0.42 0.73 16 30 H 0.11 1.49 5.97 -52.48 -0.31 1.17 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.11 1.56 5.91 -51.93 -0.31 1.26 16 35 H 0.10 1.33 5.51 -51.93 -0.29 1.04 16 36 H 0.16 1.60 7.93 -52.48 -0.42 1.19 16 37 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16 40 H 0.10 1.81 6.45 -51.92 -0.33 1.47 16 41 H 0.05 0.72 5.51 -51.93 -0.29 0.44 16 42 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 43 H 0.02 0.52 6.45 -51.93 -0.33 0.19 16 44 H 0.05 1.20 5.48 -51.93 -0.28 0.91 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -30.95 362.69 -8.90 -39.85 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.65 Total: 4.07 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -4.40 Total: -5.85 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.71 Total: -59.17 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.95 -8.90 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909307421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.796 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds