Wall clock time and date at job start Tue Mar 31 2020 15:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99902 * 2 1 4 4 C 1.50699 * 119.99779 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.47319 * 95.69957 * 4 2 1 6 6 C 1.37609 * 127.15277 * 266.14123 * 5 4 2 7 7 C 1.47772 * 126.47099 * 359.97438 * 6 5 4 8 8 C 1.39962 * 120.20320 * 179.97438 * 7 6 5 9 9 C 1.38572 * 117.87786 * 179.72825 * 8 7 6 10 10 C 1.38789 * 118.08511 * 0.25962 * 9 8 7 11 11 N 1.31952 * 120.11515 * 359.97438 * 10 9 8 12 12 N 1.28351 * 122.33044 * 0.02562 * 11 10 9 13 13 N 1.31290 * 107.05999 * 180.25712 * 6 5 4 14 14 N 1.28519 * 109.91260 * 359.62056 * 13 6 5 15 15 C 1.31483 * 110.06828 * 0.39057 * 14 13 6 16 16 N 1.38294 * 126.36889 * 179.78731 * 15 14 13 17 17 C 1.46906 * 110.99814 * 247.25642 * 16 15 14 18 18 C 1.46904 * 110.99810 * 11.20546 * 16 15 14 19 19 H 1.08992 * 109.46865 * 55.00370 * 18 16 15 20 20 C 1.52997 * 109.46989 * 295.00337 * 18 16 15 21 21 C 1.50700 * 109.47106 * 175.00020 * 18 16 15 22 22 H 1.08000 * 120.00030 * 0.02562 * 21 18 16 23 23 C 1.37876 * 120.00028 * 179.97438 * 21 18 16 24 24 N 1.31510 * 120.00099 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 120.00128 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.46858 * 60.00093 * 25 23 21 27 27 H 1.48495 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47006 * 300.00728 * 25 23 21 29 29 H 1.08001 * 120.00420 * 5.20891 * 1 2 3 30 30 H 1.08009 * 119.99898 * 185.21032 * 1 2 3 31 31 H 1.09001 * 109.47214 * 270.00238 * 3 2 1 32 32 H 1.09001 * 109.47020 * 30.00396 * 3 2 1 33 33 H 1.09002 * 109.46578 * 150.00071 * 3 2 1 34 34 H 1.09002 * 109.47470 * 335.69574 * 4 2 1 35 35 H 1.08999 * 109.46882 * 215.69705 * 4 2 1 36 36 H 1.08008 * 121.06095 * 0.02562 * 8 7 6 37 37 H 1.07996 * 120.95451 * 180.27599 * 9 8 7 38 38 H 1.08001 * 119.94099 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47212 * 61.22525 * 17 16 15 40 40 H 1.09009 * 109.46910 * 181.22108 * 17 16 15 41 41 H 1.08995 * 109.47096 * 301.22026 * 17 16 15 42 42 H 1.09004 * 109.46644 * 179.97438 * 20 18 16 43 43 H 1.09003 * 109.47468 * 299.99279 * 20 18 16 44 44 H 1.08996 * 109.47423 * 60.00067 * 20 18 16 45 45 H 0.96999 * 120.00247 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 2.4264 -1.6589 -1.3751 6 6 1.7220 -2.4654 -2.2393 7 6 0.4422 -3.1484 -1.9574 8 6 -0.1635 -3.9418 -2.9386 9 6 -1.3599 -4.5646 -2.6206 10 6 -1.8864 -4.3598 -1.3530 11 7 -1.2515 -3.5911 -0.4886 12 7 -0.1431 -3.0094 -0.7722 13 7 2.4046 -2.5185 -3.3596 14 7 3.4681 -1.8040 -3.2583 15 6 3.5328 -1.2580 -2.0640 16 7 4.5363 -0.4306 -1.5938 17 6 5.2993 -1.0849 -0.5225 18 6 5.4216 -0.0041 -2.6858 19 1 4.8289 0.4604 -3.4737 20 6 6.1571 -1.2209 -3.2508 21 6 6.4249 0.9898 -2.1598 22 1 6.4070 1.2757 -1.1185 23 6 7.3664 1.5334 -3.0078 24 7 7.3887 1.1850 -4.2757 25 14 8.6105 2.7649 -2.3557 26 1 9.4177 2.1317 -1.2820 27 1 9.5054 3.1962 -3.4594 28 1 7.8970 3.9461 -1.8072 29 1 -0.5401 0.9314 -0.0849 30 1 -0.5400 -0.9315 0.0849 31 1 2.2451 1.6198 -1.0277 32 1 1.4744 2.0647 0.5139 33 1 3.0159 1.1747 0.5138 34 1 1.4340 -2.0883 0.4220 35 1 2.9678 -1.2027 0.5991 36 1 0.2896 -4.0685 -3.9108 37 1 -1.8677 -5.1916 -3.3385 38 1 -2.8175 -4.8304 -1.0735 39 1 5.7693 -1.9885 -0.9108 40 1 6.0680 -0.4043 -0.1561 41 1 4.6270 -1.3472 0.2943 42 1 6.8137 -0.9043 -4.0613 43 1 6.7500 -1.6854 -2.4629 44 1 5.4315 -1.9397 -3.6313 45 1 8.0508 1.5676 -4.8723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909307421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:17 Heat of formation + Delta-G solvation = 171.976077 kcal Electronic energy + Delta-G solvation = -28749.311417 eV Core-core repulsion = 24998.094069 eV Total energy + Delta-G solvation = -3751.217348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.05449 -41.86927 -39.13438 -37.85628 -34.99695 -34.75450 -34.30699 -33.76851 -30.94419 -30.42653 -28.59215 -28.04289 -27.28549 -26.87421 -25.86656 -25.44978 -23.38111 -22.50023 -21.32086 -19.90462 -18.63036 -18.33470 -18.12373 -17.66585 -17.46507 -17.22591 -16.82123 -16.43294 -15.92617 -15.79724 -15.39635 -15.12341 -14.96417 -14.77385 -14.34351 -14.14845 -14.08600 -13.47603 -13.40610 -13.17498 -12.90602 -12.88902 -12.65785 -12.57724 -12.50877 -12.41143 -12.14976 -12.04391 -11.83428 -11.80696 -11.54762 -11.23891 -11.10041 -10.90164 -10.72733 -10.48027 -10.30556 -10.18342 -9.07597 -8.10290 -6.24985 -0.58857 -0.20780 0.71554 0.93840 1.45853 1.48280 1.54045 1.57668 1.70267 2.38774 2.46019 2.59790 3.01745 3.19612 3.30436 3.49386 3.61506 3.72713 3.78690 3.86258 3.92051 4.14442 4.15995 4.27283 4.42423 4.49284 4.61920 4.67233 4.70617 4.80675 4.83139 4.90450 4.94709 4.99612 5.02856 5.11968 5.16079 5.21412 5.25428 5.33931 5.57863 5.60517 5.63618 5.78154 5.83364 6.00329 6.23104 6.54865 6.83574 7.43443 7.52882 7.61791 8.96018 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.003553 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.885848 B = 7879.742147 C = 8772.294199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C -0.106 4.106 4 C 0.140 3.860 5 N -0.453 5.453 6 C 0.196 3.804 7 C 0.137 3.863 8 C -0.094 4.094 9 C -0.086 4.086 10 C 0.049 3.951 11 N -0.262 5.262 12 N -0.253 5.253 13 N -0.281 5.281 14 N -0.350 5.350 15 C 0.387 3.613 16 N -0.448 5.448 17 C 0.034 3.966 18 C 0.243 3.757 19 H 0.002 0.998 20 C -0.161 4.161 21 C -0.523 4.523 22 H 0.073 0.927 23 C 0.014 3.986 24 N -0.918 5.918 25 Si 0.966 3.034 26 H -0.265 1.265 27 H -0.289 1.289 28 H -0.271 1.271 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.164 0.836 37 H 0.204 0.796 38 H 0.220 0.780 39 H 0.029 0.971 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.029 0.971 44 H 0.047 0.953 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.133 -10.969 9.390 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.163 4.163 4 C 0.020 3.980 5 N -0.146 5.146 6 C -0.071 4.071 7 C -0.008 4.008 8 C -0.124 4.124 9 C -0.114 4.114 10 C -0.115 4.115 11 N -0.103 5.103 12 N -0.098 5.098 13 N -0.124 5.124 14 N -0.196 5.196 15 C 0.031 3.969 16 N -0.171 5.171 17 C -0.112 4.112 18 C 0.137 3.863 19 H 0.020 0.980 20 C -0.221 4.221 21 C -0.561 4.561 22 H 0.091 0.909 23 C -0.185 4.185 24 N -0.557 5.557 25 Si 0.791 3.209 26 H -0.190 1.190 27 H -0.215 1.215 28 H -0.196 1.196 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.182 0.818 37 H 0.221 0.779 38 H 0.236 0.764 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.782 -10.167 9.609 23.419 hybrid contribution 1.064 0.077 -0.802 1.335 sum -17.718 -10.090 8.807 22.210 Atomic orbital electron populations 1.24150 0.94937 1.03230 0.96958 1.21799 0.95818 0.94852 1.03266 1.20724 1.00298 0.94154 1.01100 1.21309 1.01852 0.97194 0.77673 1.46385 1.16274 1.37327 1.14648 1.22171 0.96539 0.99853 0.88503 1.19692 0.90900 0.96147 0.94108 1.22565 0.95882 0.93469 1.00466 1.22922 0.93315 0.96827 0.98357 1.25130 1.01500 0.93990 0.90900 1.72960 1.01269 1.06240 1.29815 1.73103 1.04777 1.16302 1.15626 1.74161 1.01949 1.17092 1.19184 1.74862 1.14488 1.12891 1.17391 1.23106 0.90634 0.94192 0.89015 1.59122 1.12195 1.31727 1.14033 1.22507 0.98179 0.98288 0.92275 1.18939 0.88557 0.92710 0.86068 0.98034 1.22321 1.00501 0.98239 1.01024 1.21275 1.13860 1.24367 0.96595 0.90933 1.25738 0.99426 0.98458 0.94903 1.70070 1.36331 1.44300 1.05016 0.85485 0.78464 0.79130 0.77779 1.19017 1.21478 1.19590 0.87216 0.86836 0.94277 0.90258 0.91445 0.85588 0.87694 0.81849 0.77863 0.76358 0.95254 0.88599 0.90068 0.91995 0.95235 0.93413 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 13.82 67.78 0.94 -2.87 16 2 C -0.16 -4.30 5.63 -16.49 -0.09 -4.40 16 3 C -0.11 -3.03 10.03 71.24 0.71 -2.32 16 4 C 0.14 3.97 5.81 85.63 0.50 4.47 16 5 N -0.45 -16.05 2.81 -520.95 -1.47 -17.51 16 6 C 0.20 6.87 7.83 136.17 1.07 7.94 16 7 C 0.14 3.66 6.83 41.92 0.29 3.95 16 8 C -0.09 -1.80 9.84 22.77 0.22 -1.57 16 9 C -0.09 -0.84 10.20 22.48 0.23 -0.61 16 10 C 0.05 0.54 11.31 84.81 0.96 1.50 16 11 N -0.26 -5.24 11.50 -57.13 -0.66 -5.89 16 12 N -0.25 -6.30 6.99 -48.55 -0.34 -6.64 16 13 N -0.28 -11.59 11.93 -50.82 -0.61 -12.19 16 14 N -0.35 -16.44 8.99 -58.10 -0.52 -16.97 16 15 C 0.39 16.52 6.69 260.19 1.74 18.26 16 16 N -0.45 -19.45 4.77 -711.14 -3.39 -22.84 16 17 C 0.03 1.24 8.68 127.69 1.11 2.35 16 18 C 0.24 12.74 2.06 44.17 0.09 12.83 16 19 H 0.00 0.10 8.09 -2.39 -0.02 0.09 16 20 C -0.16 -8.45 8.26 71.98 0.59 -7.85 16 21 C -0.52 -27.96 7.90 25.60 0.20 -27.76 16 22 H 0.07 3.68 6.76 -2.91 -0.02 3.66 16 23 C 0.01 0.78 5.30 84.66 0.45 1.22 16 24 N -0.92 -53.65 11.32 21.45 0.24 -53.40 16 25 Si 0.97 42.82 29.54 68.60 2.03 44.84 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 29 H 0.11 2.39 8.05 -2.91 -0.02 2.37 16 30 H 0.11 2.80 5.97 -2.91 -0.02 2.78 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.87 8.06 -2.39 -0.02 1.85 16 33 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 34 H 0.13 3.29 5.91 -2.39 -0.01 3.28 16 35 H 0.11 2.75 5.51 -2.39 -0.01 2.74 16 36 H 0.16 3.05 7.93 -2.91 -0.02 3.02 16 37 H 0.20 0.08 8.06 -2.91 -0.02 0.05 16 38 H 0.22 0.36 8.06 -2.91 -0.02 0.33 16 39 H 0.03 1.11 6.44 -2.39 -0.02 1.09 16 40 H 0.10 3.52 6.45 -2.38 -0.02 3.51 16 41 H 0.08 2.39 5.51 -2.39 -0.01 2.37 16 42 H 0.06 3.57 6.07 -2.38 -0.01 3.56 16 43 H 0.03 1.44 6.45 -2.39 -0.02 1.42 16 44 H 0.05 2.48 5.48 -2.39 -0.01 2.47 16 45 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -72.65 362.69 5.32 -67.32 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.03 Total: 18.15 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 9.01 Total: 5.13 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -6.74 Total: -135.45 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.65 5.32 -67.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909307421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.300 kcal (2) G-P(sol) polarization free energy of solvation -72.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds