Wall clock time and date at job start Tue Mar 31 2020 15:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99481 * 2 1 4 4 C 1.50697 * 120.00604 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.46991 * 94.99690 * 4 2 1 6 6 C 1.37612 * 127.15544 * 264.16796 * 5 4 2 7 7 C 1.47772 * 126.47158 * 0.04129 * 6 5 4 8 8 C 1.39962 * 120.20556 * 179.97438 * 7 6 5 9 9 C 1.38569 * 117.87620 * 179.97438 * 8 7 6 10 10 C 1.38786 * 118.08986 * 359.97438 * 9 8 7 11 11 N 1.31954 * 120.11467 * 359.97438 * 10 9 8 12 12 N 1.28356 * 122.32959 * 359.73554 * 11 10 9 13 13 N 1.31289 * 107.05817 * 179.89876 * 6 5 4 14 14 N 1.28511 * 109.91266 * 0.38130 * 13 6 5 15 15 C 1.31478 * 110.07112 * 359.75398 * 14 13 6 16 16 N 1.38299 * 126.36507 * 180.02562 * 15 14 13 17 17 C 1.46901 * 111.00553 * 274.34127 * 16 15 14 18 18 C 1.46895 * 110.99884 * 38.30072 * 16 15 14 19 19 H 1.09002 * 109.47077 * 299.99277 * 18 16 15 20 20 C 1.52996 * 109.47524 * 59.99657 * 18 16 15 21 21 C 1.50703 * 109.46959 * 179.97438 * 18 16 15 22 22 H 1.07998 * 120.00385 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99921 * 179.97438 * 21 18 16 24 24 N 1.31516 * 120.00232 * 359.97438 * 23 21 18 25 25 Si 1.86800 * 120.00122 * 180.02562 * 23 21 18 26 26 H 1.48505 * 109.47214 * 89.99832 * 25 23 21 27 27 H 1.48497 * 109.47232 * 210.00245 * 25 23 21 28 28 H 1.48498 * 109.47164 * 330.00100 * 25 23 21 29 29 H 1.08000 * 119.99060 * 180.02562 * 1 2 3 30 30 H 1.07992 * 120.00094 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46726 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47140 * 300.00103 * 3 2 1 33 33 H 1.09000 * 109.47726 * 60.00096 * 3 2 1 34 34 H 1.08992 * 109.47465 * 214.99946 * 4 2 1 35 35 H 1.09005 * 109.46996 * 334.99867 * 4 2 1 36 36 H 1.07996 * 121.05984 * 0.02562 * 8 7 6 37 37 H 1.07997 * 120.95205 * 180.02562 * 9 8 7 38 38 H 1.07999 * 119.94404 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.46711 * 65.62646 * 17 16 15 40 40 H 1.08994 * 109.47455 * 185.62457 * 17 16 15 41 41 H 1.09006 * 109.46883 * 305.63017 * 17 16 15 42 42 H 1.08996 * 109.47701 * 180.02562 * 20 18 16 43 43 H 1.09001 * 109.46850 * 300.00545 * 20 18 16 44 44 H 1.09002 * 109.47253 * 59.99728 * 20 18 16 45 45 H 0.96998 * 120.00535 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0637 -1.3050 -0.0006 5 7 2.4121 -1.6671 -1.3767 6 6 1.7182 -2.5086 -2.2158 7 6 0.4662 -3.2274 -1.9001 8 6 -0.1316 -4.0545 -2.8580 9 6 -1.3043 -4.7057 -2.5105 10 6 -1.8135 -4.4992 -1.2361 11 7 -1.1847 -3.7023 -0.3930 12 7 -0.0952 -3.0983 -0.7022 13 7 2.3769 -2.5500 -3.3507 14 7 3.4241 -1.8088 -3.2762 15 6 3.4945 -1.2450 -2.0905 16 7 4.4825 -0.3836 -1.6495 17 6 5.6280 -1.1283 -1.1098 18 6 4.9045 0.5268 -2.7222 19 1 5.2946 -0.0534 -3.5586 20 6 3.7056 1.3539 -3.1904 21 6 5.9790 1.4484 -2.2052 22 1 6.3150 1.3658 -1.1822 23 6 6.5338 2.3964 -3.0386 24 7 6.1257 2.4960 -4.2849 25 14 7.8660 3.5383 -2.3980 26 1 9.1977 2.9209 -2.6233 27 1 7.7939 4.8356 -3.1170 28 1 7.6657 3.7663 -0.9444 29 1 -0.5398 -0.9354 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 3.1351 1.1060 -0.0005 32 1 1.8001 1.8767 -0.8900 33 1 1.8002 1.8768 0.8900 34 1 2.9743 -1.1990 0.5888 35 1 1.4388 -2.0856 0.4334 36 1 0.3076 -4.1816 -3.8364 37 1 -1.8070 -5.3560 -3.2110 38 1 -2.7260 -4.9915 -0.9339 39 1 6.1052 -1.6918 -1.9116 40 1 6.3455 -0.4297 -0.6798 41 1 5.2830 -1.8162 -0.3378 42 1 4.0187 2.0291 -3.9868 43 1 2.9282 0.6876 -3.5642 44 1 3.3156 1.9341 -2.3541 45 1 6.5157 3.1632 -4.8711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909307422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:21 Heat of formation + Delta-G solvation = 180.633654 kcal Electronic energy + Delta-G solvation = -28883.274665 eV Core-core repulsion = 25132.432737 eV Total energy + Delta-G solvation = -3750.841928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63806 -41.03612 -37.17647 -36.55042 -33.71710 -33.47562 -33.15708 -32.51514 -29.44317 -29.12759 -27.27690 -26.72193 -25.68244 -25.01158 -24.72642 -24.21164 -21.82815 -21.26948 -19.73721 -18.57554 -17.61630 -17.23671 -16.82833 -16.51746 -16.23002 -15.67011 -15.31560 -14.98342 -14.58997 -14.40402 -14.07325 -13.90600 -13.67290 -13.44318 -13.22607 -12.85255 -12.39144 -12.05395 -11.92555 -11.61785 -11.45163 -11.29653 -11.15130 -10.98088 -10.94471 -10.81021 -10.71413 -10.54166 -10.45862 -10.26966 -10.22392 -10.08582 -9.86584 -9.72397 -9.14063 -8.99407 -8.57759 -8.47173 -7.66518 -6.07729 -4.14839 0.29414 0.52735 1.94690 2.19664 2.81447 3.03458 3.26991 3.34188 3.36368 3.45910 3.51700 4.10440 4.26632 4.31426 4.46017 4.58379 4.65306 4.78604 4.88959 4.94261 5.24431 5.35384 5.40687 5.54065 5.55511 5.66182 5.80314 5.85900 5.90208 6.04806 6.06100 6.16324 6.17772 6.27586 6.48960 6.50234 6.72155 6.75001 6.85789 7.00996 7.04809 7.12009 7.37392 7.61453 7.70856 7.91419 8.17939 8.34622 8.40136 8.86634 9.02286 9.50003 10.98882 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.003587 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.144016 B = 7804.679541 C = 8383.437664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.134 4.134 3 C -0.122 4.122 4 C 0.145 3.855 5 N -0.446 5.446 6 C 0.177 3.823 7 C 0.169 3.831 8 C -0.084 4.084 9 C -0.112 4.112 10 C 0.035 3.965 11 N -0.236 5.236 12 N -0.240 5.240 13 N -0.251 5.251 14 N -0.308 5.308 15 C 0.405 3.595 16 N -0.466 5.466 17 C 0.046 3.954 18 C 0.228 3.772 19 H 0.026 0.974 20 C -0.132 4.132 21 C -0.513 4.513 22 H 0.066 0.934 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.899 3.101 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.273 1.273 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.034 0.966 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.006 0.994 44 H 0.034 0.966 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 -12.052 7.242 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.135 4.135 3 C -0.179 4.179 4 C 0.023 3.977 5 N -0.138 5.138 6 C -0.087 4.087 7 C 0.024 3.976 8 C -0.114 4.114 9 C -0.141 4.141 10 C -0.130 4.130 11 N -0.077 5.077 12 N -0.085 5.085 13 N -0.096 5.096 14 N -0.155 5.155 15 C 0.050 3.950 16 N -0.193 5.193 17 C -0.102 4.102 18 C 0.124 3.876 19 H 0.043 0.957 20 C -0.190 4.190 21 C -0.552 4.552 22 H 0.084 0.916 23 C -0.138 4.138 24 N -0.523 5.523 25 Si 0.727 3.273 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.198 1.198 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.181 0.819 37 H 0.174 0.826 38 H 0.192 0.808 39 H 0.053 0.947 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.750 -11.297 7.607 19.353 hybrid contribution 0.465 0.028 -0.521 0.699 sum -13.285 -11.269 7.086 18.807 Atomic orbital electron populations 1.23960 0.95458 1.02273 0.99672 1.21844 0.95278 0.95379 1.00967 1.20963 1.02202 0.93479 1.01256 1.21091 1.01332 0.96450 0.78873 1.46418 1.18577 1.34826 1.13984 1.21550 0.96748 1.00595 0.89828 1.19742 0.91646 0.93888 0.92346 1.22380 0.94551 0.93292 1.01167 1.22401 0.95384 0.98651 0.97653 1.24360 1.00824 0.96198 0.91623 1.73015 1.01447 1.04442 1.28785 1.73188 1.04274 1.16044 1.15044 1.74263 1.02362 1.16119 1.16899 1.74886 1.13482 1.10284 1.16846 1.22935 0.90418 0.94176 0.87437 1.59211 1.08621 1.13789 1.37684 1.22276 0.92202 0.97324 0.98371 1.19399 0.93515 0.88476 0.86210 0.95666 1.21846 0.95908 0.99853 1.01402 1.21030 1.19244 1.16909 0.97988 0.91587 1.24895 0.96955 0.97207 0.94785 1.69907 1.42172 1.34916 1.05322 0.86484 0.81811 0.80090 0.78938 1.20665 1.21232 1.19799 0.87406 0.88524 0.89493 0.91618 0.92202 0.88375 0.86678 0.81897 0.82596 0.80821 0.94694 0.88692 0.93749 0.89165 0.97537 0.94672 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 13.93 29.01 0.40 -2.03 16 2 C -0.13 -2.00 5.64 -101.07 -0.57 -2.57 16 3 C -0.12 -1.92 9.68 36.01 0.35 -1.57 16 4 C 0.14 2.16 5.88 -5.20 -0.03 2.13 16 5 N -0.45 -7.92 2.81 -116.02 -0.33 -8.24 16 6 C 0.18 3.08 7.83 -153.74 -1.20 1.88 16 7 C 0.17 2.36 6.83 -82.85 -0.57 1.79 16 8 C -0.08 -0.89 9.84 -38.81 -0.38 -1.27 16 9 C -0.11 -0.81 10.20 -39.26 -0.40 -1.21 16 10 C 0.03 0.28 11.31 -17.30 -0.20 0.08 16 11 N -0.24 -2.76 11.50 30.59 0.35 -2.40 16 12 N -0.24 -3.25 7.14 33.30 0.24 -3.01 16 13 N -0.25 -4.96 11.93 32.59 0.39 -4.57 16 14 N -0.31 -6.87 11.20 30.28 0.34 -6.53 16 15 C 0.41 8.32 5.43 -319.09 -1.73 6.59 16 16 N -0.47 -9.76 4.01 -176.14 -0.71 -10.47 16 17 C 0.05 0.85 9.15 60.07 0.55 1.40 16 18 C 0.23 5.65 1.82 -68.87 -0.13 5.52 16 19 H 0.03 0.72 7.87 -51.93 -0.41 0.31 16 20 C -0.13 -3.29 8.84 37.16 0.33 -2.96 16 21 C -0.51 -13.24 7.94 -34.44 -0.27 -13.51 16 22 H 0.07 1.64 6.40 -52.49 -0.34 1.31 16 23 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 24 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 25 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 29 H 0.11 1.50 6.11 -52.49 -0.32 1.18 16 30 H 0.10 1.23 8.05 -52.49 -0.42 0.81 16 31 H 0.09 1.52 7.35 -51.93 -0.38 1.14 16 32 H 0.07 1.13 7.18 -51.93 -0.37 0.75 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.12 1.61 5.82 -51.93 -0.30 1.31 16 36 H 0.16 1.60 7.93 -52.49 -0.42 1.18 16 37 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.75 6.30 -51.93 -0.33 1.42 16 41 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 42 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 43 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 44 H 0.03 0.83 6.76 -51.93 -0.35 0.48 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -31.00 370.09 -8.46 -39.46 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.98 Total: 2.93 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.94 Total: -4.12 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.91 Total: -59.34 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.00 -8.46 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909307422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.091 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds