Wall clock time and date at job start Tue Mar 31 2020 15:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99481 * 2 1 4 4 C 1.50697 * 120.00604 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.46991 * 94.99690 * 4 2 1 6 6 C 1.37612 * 127.15544 * 264.16796 * 5 4 2 7 7 C 1.47772 * 126.47158 * 0.04129 * 6 5 4 8 8 C 1.39962 * 120.20556 * 179.97438 * 7 6 5 9 9 C 1.38569 * 117.87620 * 179.97438 * 8 7 6 10 10 C 1.38786 * 118.08986 * 359.97438 * 9 8 7 11 11 N 1.31954 * 120.11467 * 359.97438 * 10 9 8 12 12 N 1.28356 * 122.32959 * 359.73554 * 11 10 9 13 13 N 1.31289 * 107.05817 * 179.89876 * 6 5 4 14 14 N 1.28511 * 109.91266 * 0.38130 * 13 6 5 15 15 C 1.31478 * 110.07112 * 359.75398 * 14 13 6 16 16 N 1.38299 * 126.36507 * 180.02562 * 15 14 13 17 17 C 1.46901 * 111.00553 * 274.34127 * 16 15 14 18 18 C 1.46895 * 110.99884 * 38.30072 * 16 15 14 19 19 H 1.09002 * 109.47077 * 299.99277 * 18 16 15 20 20 C 1.52996 * 109.47524 * 59.99657 * 18 16 15 21 21 C 1.50703 * 109.46959 * 179.97438 * 18 16 15 22 22 H 1.07998 * 120.00385 * 0.02562 * 21 18 16 23 23 C 1.37878 * 119.99921 * 179.97438 * 21 18 16 24 24 N 1.31516 * 120.00232 * 359.97438 * 23 21 18 25 25 Si 1.86800 * 120.00122 * 180.02562 * 23 21 18 26 26 H 1.48505 * 109.47214 * 89.99832 * 25 23 21 27 27 H 1.48497 * 109.47232 * 210.00245 * 25 23 21 28 28 H 1.48498 * 109.47164 * 330.00100 * 25 23 21 29 29 H 1.08000 * 119.99060 * 180.02562 * 1 2 3 30 30 H 1.07992 * 120.00094 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46726 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47140 * 300.00103 * 3 2 1 33 33 H 1.09000 * 109.47726 * 60.00096 * 3 2 1 34 34 H 1.08992 * 109.47465 * 214.99946 * 4 2 1 35 35 H 1.09005 * 109.46996 * 334.99867 * 4 2 1 36 36 H 1.07996 * 121.05984 * 0.02562 * 8 7 6 37 37 H 1.07997 * 120.95205 * 180.02562 * 9 8 7 38 38 H 1.07999 * 119.94404 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.46711 * 65.62646 * 17 16 15 40 40 H 1.08994 * 109.47455 * 185.62457 * 17 16 15 41 41 H 1.09006 * 109.46883 * 305.63017 * 17 16 15 42 42 H 1.08996 * 109.47701 * 180.02562 * 20 18 16 43 43 H 1.09001 * 109.46850 * 300.00545 * 20 18 16 44 44 H 1.09002 * 109.47253 * 59.99728 * 20 18 16 45 45 H 0.96998 * 120.00535 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0637 -1.3050 -0.0006 5 7 2.4121 -1.6671 -1.3767 6 6 1.7182 -2.5086 -2.2158 7 6 0.4662 -3.2274 -1.9001 8 6 -0.1316 -4.0545 -2.8580 9 6 -1.3043 -4.7057 -2.5105 10 6 -1.8135 -4.4992 -1.2361 11 7 -1.1847 -3.7023 -0.3930 12 7 -0.0952 -3.0983 -0.7022 13 7 2.3769 -2.5500 -3.3507 14 7 3.4241 -1.8088 -3.2762 15 6 3.4945 -1.2450 -2.0905 16 7 4.4825 -0.3836 -1.6495 17 6 5.6280 -1.1283 -1.1098 18 6 4.9045 0.5268 -2.7222 19 1 5.2946 -0.0534 -3.5586 20 6 3.7056 1.3539 -3.1904 21 6 5.9790 1.4484 -2.2052 22 1 6.3150 1.3658 -1.1822 23 6 6.5338 2.3964 -3.0386 24 7 6.1257 2.4960 -4.2849 25 14 7.8660 3.5383 -2.3980 26 1 9.1977 2.9209 -2.6233 27 1 7.7939 4.8356 -3.1170 28 1 7.6657 3.7663 -0.9444 29 1 -0.5398 -0.9354 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 3.1351 1.1060 -0.0005 32 1 1.8001 1.8767 -0.8900 33 1 1.8002 1.8768 0.8900 34 1 2.9743 -1.1990 0.5888 35 1 1.4388 -2.0856 0.4334 36 1 0.3076 -4.1816 -3.8364 37 1 -1.8070 -5.3560 -3.2110 38 1 -2.7260 -4.9915 -0.9339 39 1 6.1052 -1.6918 -1.9116 40 1 6.3455 -0.4297 -0.6798 41 1 5.2830 -1.8162 -0.3378 42 1 4.0187 2.0291 -3.9868 43 1 2.9282 0.6876 -3.5642 44 1 3.3156 1.9341 -2.3541 45 1 6.5157 3.1632 -4.8711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909307422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:20 Heat of formation + Delta-G solvation = 163.407003 kcal Electronic energy + Delta-G solvation = -28884.021669 eV Core-core repulsion = 25132.432737 eV Total energy + Delta-G solvation = -3751.588931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.06960 -41.88554 -38.88505 -37.80845 -35.03816 -34.74920 -34.33107 -33.78138 -31.31987 -30.56350 -28.58070 -27.94943 -27.41976 -26.26758 -25.93276 -25.40761 -23.52165 -22.54895 -21.33393 -19.82796 -18.64872 -18.46724 -18.10203 -17.72988 -17.65553 -17.03405 -16.83387 -16.39068 -15.98986 -15.64954 -15.40680 -15.11564 -15.01848 -14.76186 -14.25949 -14.16248 -14.07004 -13.70845 -13.21064 -12.98679 -12.96884 -12.82788 -12.71647 -12.67511 -12.50739 -12.19338 -12.16542 -12.08396 -11.95575 -11.82934 -11.68441 -11.25328 -11.13517 -11.02005 -10.75017 -10.56065 -10.17931 -10.02099 -9.35913 -8.11488 -6.25502 -0.61626 -0.22142 0.69004 0.92123 1.46475 1.47380 1.54768 1.58891 1.65611 2.36403 2.45106 2.57813 3.00717 3.20236 3.28333 3.48183 3.68588 3.75013 3.78038 3.84908 4.02102 4.14561 4.22005 4.26753 4.47013 4.56183 4.59786 4.67406 4.76455 4.82268 4.83487 4.88032 4.91687 4.94267 4.98178 5.01855 5.08443 5.21421 5.25242 5.39796 5.45734 5.59123 5.66292 5.81065 5.86164 5.96705 6.15496 6.56084 6.84577 7.42865 7.50590 7.54767 8.95584 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.003587 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.144016 B = 7804.679541 C = 8383.437664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 C -0.115 4.115 4 C 0.144 3.856 5 N -0.443 5.443 6 C 0.200 3.800 7 C 0.134 3.866 8 C -0.093 4.093 9 C -0.085 4.085 10 C 0.050 3.950 11 N -0.262 5.262 12 N -0.253 5.253 13 N -0.281 5.281 14 N -0.352 5.352 15 C 0.387 3.613 16 N -0.458 5.458 17 C 0.047 3.953 18 C 0.242 3.758 19 H -0.021 1.021 20 C -0.111 4.111 21 C -0.520 4.520 22 H 0.076 0.924 23 C 0.014 3.986 24 N -0.920 5.920 25 Si 0.966 3.034 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.261 1.261 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.165 0.835 37 H 0.205 0.795 38 H 0.221 0.779 39 H 0.018 0.982 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.063 0.937 43 H -0.003 1.003 44 H 0.041 0.959 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 -13.442 9.195 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.024 3.976 5 N -0.134 5.134 6 C -0.066 4.066 7 C -0.011 4.011 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.114 4.114 11 N -0.103 5.103 12 N -0.098 5.098 13 N -0.125 5.125 14 N -0.197 5.197 15 C 0.031 3.969 16 N -0.184 5.184 17 C -0.100 4.100 18 C 0.136 3.864 19 H -0.003 1.003 20 C -0.170 4.170 21 C -0.558 4.558 22 H 0.094 0.906 23 C -0.185 4.185 24 N -0.559 5.559 25 Si 0.792 3.208 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.185 1.185 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.182 0.818 37 H 0.222 0.778 38 H 0.237 0.763 39 H 0.037 0.963 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.016 0.984 44 H 0.060 0.940 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.166 -12.706 9.584 22.686 hybrid contribution 0.919 0.249 -1.103 1.457 sum -15.247 -12.457 8.481 21.438 Atomic orbital electron populations 1.24077 0.95013 1.02999 0.97594 1.21806 0.95689 0.94919 1.02700 1.20848 1.00962 0.94016 1.01306 1.21278 1.01909 0.96937 0.77509 1.46560 1.17652 1.34455 1.14765 1.22255 0.96868 0.98810 0.88698 1.19699 0.91329 0.95954 0.94101 1.22570 0.95795 0.93178 1.00709 1.22933 0.93315 0.97116 0.97998 1.25152 1.01177 0.93939 0.91128 1.72972 1.01311 1.05891 1.30104 1.73104 1.05165 1.16763 1.14772 1.74157 1.02695 1.17195 1.18444 1.74760 1.15117 1.11610 1.18252 1.22776 0.91205 0.95109 0.87815 1.59105 1.09265 1.14179 1.35801 1.22332 0.91718 0.97551 0.98433 1.18994 0.93061 0.88437 0.85889 1.00342 1.21592 0.95724 0.99107 1.00552 1.21321 1.19307 1.16788 0.98368 0.90600 1.25745 0.99118 0.98791 0.94862 1.70064 1.43544 1.35684 1.06634 0.85426 0.78913 0.77710 0.78799 1.20246 1.21413 1.18490 0.87151 0.87232 0.91489 0.93712 0.89960 0.87768 0.85439 0.81761 0.77755 0.76281 0.96336 0.88472 0.90729 0.91785 0.98392 0.94025 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 13.93 67.77 0.94 -3.22 16 2 C -0.15 -4.39 5.64 -16.49 -0.09 -4.48 16 3 C -0.11 -3.57 9.68 71.24 0.69 -2.88 16 4 C 0.14 4.26 5.88 85.63 0.50 4.76 16 5 N -0.44 -15.97 2.81 -520.96 -1.47 -17.43 16 6 C 0.20 7.08 7.83 136.17 1.07 8.14 16 7 C 0.13 3.63 6.83 41.92 0.29 3.92 16 8 C -0.09 -1.77 9.84 22.77 0.22 -1.55 16 9 C -0.09 -0.83 10.20 22.48 0.23 -0.60 16 10 C 0.05 0.56 11.31 84.81 0.96 1.52 16 11 N -0.26 -5.32 11.50 -57.13 -0.66 -5.98 16 12 N -0.25 -6.41 7.14 -48.55 -0.35 -6.75 16 13 N -0.28 -11.60 11.93 -50.82 -0.61 -12.20 16 14 N -0.35 -16.55 11.20 -58.11 -0.65 -17.20 16 15 C 0.39 16.55 5.43 260.19 1.41 17.96 16 16 N -0.46 -19.84 4.01 -711.17 -2.85 -22.69 16 17 C 0.05 1.77 9.15 127.69 1.17 2.94 16 18 C 0.24 12.57 1.82 44.17 0.08 12.65 16 19 H -0.02 -1.28 7.87 -2.39 -0.02 -1.30 16 20 C -0.11 -5.86 8.84 71.98 0.64 -5.22 16 21 C -0.52 -27.43 7.94 25.60 0.20 -27.23 16 22 H 0.08 3.78 6.40 -2.91 -0.02 3.77 16 23 C 0.01 0.76 5.30 84.65 0.45 1.21 16 24 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 25 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 29 H 0.11 2.88 6.11 -2.91 -0.02 2.87 16 30 H 0.11 2.57 8.05 -2.91 -0.02 2.55 16 31 H 0.07 2.35 7.35 -2.39 -0.02 2.33 16 32 H 0.04 1.55 7.18 -2.39 -0.02 1.54 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.13 3.44 5.82 -2.38 -0.01 3.43 16 36 H 0.16 3.03 7.93 -2.91 -0.02 3.01 16 37 H 0.21 0.04 8.06 -2.91 -0.02 0.02 16 38 H 0.22 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 3.61 6.30 -2.39 -0.02 3.59 16 41 H 0.07 2.35 8.11 -2.38 -0.02 2.33 16 42 H 0.06 3.69 6.07 -2.39 -0.01 3.67 16 43 H 0.00 -0.16 6.91 -2.39 -0.02 -0.18 16 44 H 0.04 2.06 6.76 -2.39 -0.02 2.05 16 45 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.32 370.09 5.47 -66.85 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.01 Total: 16.08 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 8.76 Total: 7.91 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -6.33 Total: -135.33 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.32 5.47 -66.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909307422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.261 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds