Wall clock time and date at job start Tue Mar 31 2020 15:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.47302 * 2 1 4 4 C 1.50706 * 109.46835 * 240.00055 * 2 1 3 5 5 H 1.07993 * 120.00021 * 239.99935 * 4 2 1 6 6 C 1.37877 * 119.99732 * 60.00425 * 4 2 1 7 7 N 1.31516 * 120.00049 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00065 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46942 * 89.99447 * 8 6 4 10 10 H 1.48492 * 109.47137 * 209.99959 * 8 6 4 11 11 H 1.48499 * 109.46855 * 329.99862 * 8 6 4 12 12 N 1.46901 * 109.47033 * 120.00444 * 2 1 3 13 13 C 1.46895 * 110.99591 * 176.04503 * 12 2 1 14 14 C 1.38289 * 111.00154 * 299.99725 * 12 2 1 15 15 N 1.31483 * 126.36394 * 305.51352 * 14 12 2 16 16 N 1.28521 * 110.06686 * 179.72603 * 15 14 12 17 17 C 1.31282 * 109.91473 * 0.44857 * 16 15 14 18 18 C 1.47777 * 126.47284 * 179.82286 * 17 16 15 19 19 C 1.39959 * 120.20085 * 359.66921 * 18 17 16 20 20 C 1.38573 * 117.87700 * 180.02562 * 19 18 17 21 21 C 1.38786 * 118.08457 * 359.97438 * 20 19 18 22 22 N 1.31950 * 120.11887 * 0.02562 * 21 20 19 23 23 N 1.28348 * 122.32980 * 359.97438 * 22 21 20 24 24 N 1.36357 * 126.36778 * 125.50300 * 14 12 2 25 25 C 1.46501 * 127.15372 * 0.02562 * 24 14 12 26 26 C 1.52994 * 109.47135 * 272.82071 * 25 24 14 27 27 C 1.53003 * 117.49982 * 243.62078 * 26 25 24 28 28 C 1.53001 * 117.49774 * 174.99859 * 26 25 24 29 29 H 1.08999 * 109.46461 * 299.99800 * 1 2 3 30 30 H 1.08996 * 109.47163 * 59.99449 * 1 2 3 31 31 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00017 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47112 * 177.42240 * 13 12 2 34 34 H 1.09004 * 109.47191 * 297.41437 * 13 12 2 35 35 H 1.09001 * 109.47717 * 57.42249 * 13 12 2 36 36 H 1.08004 * 121.06642 * 0.03698 * 19 18 17 37 37 H 1.07998 * 120.95375 * 180.02562 * 20 19 18 38 38 H 1.08008 * 119.93819 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47026 * 32.82710 * 25 24 14 40 40 H 1.09002 * 109.46962 * 152.82239 * 25 24 14 41 41 H 1.09002 * 115.55338 * 29.33386 * 26 25 24 42 42 H 1.08995 * 117.49585 * 0.02562 * 27 26 25 43 43 H 1.08998 * 117.49405 * 145.02218 * 27 26 25 44 44 H 1.09001 * 117.50040 * 214.98177 * 28 26 25 45 45 H 1.09003 * 117.50079 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0081 9 1 1.3447 -2.1613 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7946 1.1869 14 6 1.5764 -0.0656 2.3495 15 7 1.7349 1.2031 2.6563 16 7 1.1953 1.4519 3.7959 17 6 0.6682 0.3557 4.2900 18 6 -0.0391 0.2256 5.5810 19 6 -0.1941 1.3394 6.4142 20 6 -0.8648 1.1628 7.6139 21 6 -1.3416 -0.1053 7.9153 22 7 -1.1517 -1.1019 7.0717 23 7 -0.5321 -0.9499 5.9580 24 7 0.8935 -0.6480 3.3760 25 6 0.4850 -2.0508 3.4836 26 6 -0.8738 -2.2398 2.8064 27 6 -2.0485 -2.6698 3.6873 28 6 -1.4221 -3.6648 2.7082 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7082 1.1611 -3.4843 33 1 3.8240 -1.2705 2.1071 34 1 3.8005 -1.3921 0.3315 35 1 3.9182 0.2029 1.1129 36 1 0.1964 2.3058 6.1312 37 1 -1.0129 1.9883 8.2943 38 1 -1.8690 -0.2766 8.8422 39 1 1.2258 -2.6835 2.9947 40 1 0.4084 -2.3273 4.5352 41 1 -1.0859 -1.5610 1.9803 42 1 -1.8533 -2.8177 4.7494 43 1 -3.0337 -2.2737 3.4410 44 1 -1.9952 -3.9233 1.8178 45 1 -0.8150 -4.4676 3.1265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910406937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:05 Heat of formation + Delta-G solvation = 185.441771 kcal Electronic energy + Delta-G solvation = -28709.398804 eV Core-core repulsion = 24958.765372 eV Total energy + Delta-G solvation = -3750.633432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63396 -41.00917 -37.51477 -37.11234 -34.19607 -33.66644 -33.19918 -32.66526 -29.54407 -29.04452 -27.49781 -25.76433 -25.02288 -24.72424 -24.23473 -22.26547 -21.83707 -21.50644 -20.53579 -19.47776 -17.77674 -17.23774 -16.88125 -16.54363 -16.15721 -15.91446 -15.40040 -15.05100 -14.63810 -14.55713 -14.04404 -14.02401 -13.64781 -13.43620 -13.19245 -12.98714 -12.38467 -11.92164 -11.84334 -11.45922 -11.36079 -11.24577 -11.15020 -11.01884 -10.79891 -10.70246 -10.54026 -10.52447 -10.42099 -10.28616 -10.22128 -10.08611 -10.00410 -9.72349 -9.67848 -9.12672 -8.53753 -8.44118 -7.77098 -6.09198 -4.15896 0.31498 0.55116 2.11407 2.49832 3.02262 3.27206 3.33994 3.36192 3.44860 3.52942 3.91638 4.12484 4.28993 4.29924 4.47501 4.55188 4.67677 4.79147 4.84673 4.97548 5.14168 5.23326 5.29690 5.37475 5.48156 5.57639 5.64689 5.67872 5.79877 5.84952 5.90198 6.01793 6.07506 6.23880 6.25713 6.33148 6.43617 6.55037 6.70850 6.79774 6.93255 7.06254 7.33548 7.60130 7.70723 7.88385 8.14893 8.37652 8.39966 8.86717 8.98325 9.48994 10.97674 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.003650 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.927963 B = 7668.422943 C = 8432.591098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.227 3.773 3 H 0.024 0.976 4 C -0.511 4.511 5 H 0.067 0.933 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.472 5.472 13 C 0.049 3.951 14 C 0.403 3.597 15 N -0.311 5.311 16 N -0.254 5.254 17 C 0.182 3.818 18 C 0.166 3.834 19 C -0.083 4.083 20 C -0.113 4.113 21 C 0.035 3.965 22 N -0.236 5.236 23 N -0.233 5.233 24 N -0.443 5.443 25 C 0.145 3.855 26 C -0.165 4.165 27 C -0.173 4.173 28 C -0.166 4.166 29 H 0.001 0.999 30 H 0.092 0.908 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 -3.750 19.296 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.123 3.877 3 H 0.041 0.959 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.199 5.199 13 C -0.098 4.098 14 C 0.047 3.953 15 N -0.157 5.157 16 N -0.100 5.100 17 C -0.082 4.082 18 C 0.022 3.978 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.130 4.130 22 N -0.077 5.077 23 N -0.079 5.079 24 N -0.134 5.134 25 C 0.022 3.978 26 C -0.184 4.184 27 C -0.210 4.210 28 C -0.204 4.204 29 H 0.020 0.980 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.181 0.819 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.360 -4.338 18.645 19.633 hybrid contribution 0.210 0.577 -0.520 0.805 sum -4.150 -3.760 18.125 18.971 Atomic orbital electron populations 1.21844 0.97559 0.99375 1.00111 1.19441 0.92374 0.93018 0.82902 0.95855 1.21037 1.32013 1.12698 0.89245 0.91490 1.24907 0.95014 0.94967 0.99030 1.69900 1.36277 1.22652 1.23742 0.86449 0.79218 0.79216 0.82239 1.20639 1.21229 1.19782 1.59240 1.11498 1.50710 0.98499 1.22233 0.84658 1.01330 1.01595 1.22868 0.94560 0.87719 0.90110 1.74851 1.21015 1.12307 1.07517 1.74253 1.10249 1.20760 1.04691 1.21569 1.07300 0.86487 0.92880 1.19734 0.94839 0.92165 0.91109 1.22377 0.95657 1.00428 0.92901 1.22391 0.95912 0.99075 0.96848 1.24360 0.97611 0.90488 1.00524 1.73015 1.08534 1.28340 0.97831 1.73246 1.05806 1.20062 1.08751 1.46389 1.41030 1.10709 1.15309 1.21576 0.95759 0.77415 1.03033 1.22515 0.93647 0.99700 1.02543 1.23094 0.96882 1.03260 0.97751 1.22885 1.03649 0.92081 1.01751 0.98011 0.88961 0.94672 0.92720 0.93770 0.88951 0.94483 0.81949 0.82646 0.80880 0.88261 0.87247 0.86924 0.87555 0.89580 0.88603 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.39 37.16 0.31 -2.95 16 2 C 0.23 5.70 1.96 -68.86 -0.14 5.57 16 3 H 0.02 0.68 8.01 -51.93 -0.42 0.26 16 4 C -0.51 -13.42 7.95 -34.44 -0.27 -13.70 16 5 H 0.07 1.71 6.40 -52.49 -0.34 1.37 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.47 -10.18 4.65 -176.13 -0.82 -11.00 16 13 C 0.05 0.95 9.13 60.06 0.55 1.50 16 14 C 0.40 8.37 5.05 -319.10 -1.61 6.76 16 15 N -0.31 -6.89 12.00 30.28 0.36 -6.52 16 16 N -0.25 -5.00 11.93 32.59 0.39 -4.61 16 17 C 0.18 3.18 7.83 -153.74 -1.20 1.97 16 18 C 0.17 2.34 6.83 -82.85 -0.57 1.77 16 19 C -0.08 -0.88 9.84 -38.81 -0.38 -1.27 16 20 C -0.11 -0.83 10.20 -39.26 -0.40 -1.23 16 21 C 0.03 0.28 11.31 -17.30 -0.20 0.08 16 22 N -0.24 -2.75 11.50 30.59 0.35 -2.40 16 23 N -0.23 -3.15 8.23 33.30 0.27 -2.88 16 24 N -0.44 -7.96 2.83 -114.73 -0.32 -8.29 16 25 C 0.14 2.19 6.00 -4.04 -0.02 2.17 16 26 C -0.17 -2.50 6.01 -90.62 -0.54 -3.04 16 27 C -0.17 -2.24 10.10 -26.73 -0.27 -2.51 16 28 C -0.17 -2.07 10.25 -26.73 -0.27 -2.35 16 29 H 0.00 0.02 7.22 -51.93 -0.38 -0.35 16 30 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 31 H 0.03 0.84 7.43 -51.93 -0.39 0.45 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.09 1.77 6.33 -51.93 -0.33 1.44 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.16 1.59 7.93 -52.48 -0.42 1.17 16 37 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.11 1.53 5.87 -51.93 -0.31 1.22 16 41 H 0.11 2.06 6.94 -51.93 -0.36 1.70 16 42 H 0.11 1.36 7.34 -51.93 -0.38 0.98 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -31.15 372.27 -9.80 -40.95 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.13 Total: 3.36 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -5.12 Total: -5.61 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.86 Total: -59.99 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.15 -9.80 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910406937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.395 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds