Wall clock time and date at job start Tue Mar 31 2020 15:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.47302 * 2 1 4 4 C 1.50706 * 109.46835 * 240.00055 * 2 1 3 5 5 H 1.07993 * 120.00021 * 239.99935 * 4 2 1 6 6 C 1.37877 * 119.99732 * 60.00425 * 4 2 1 7 7 N 1.31516 * 120.00049 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00065 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46942 * 89.99447 * 8 6 4 10 10 H 1.48492 * 109.47137 * 209.99959 * 8 6 4 11 11 H 1.48499 * 109.46855 * 329.99862 * 8 6 4 12 12 N 1.46901 * 109.47033 * 120.00444 * 2 1 3 13 13 C 1.46895 * 110.99591 * 176.04503 * 12 2 1 14 14 C 1.38289 * 111.00154 * 299.99725 * 12 2 1 15 15 N 1.31483 * 126.36394 * 305.51352 * 14 12 2 16 16 N 1.28521 * 110.06686 * 179.72603 * 15 14 12 17 17 C 1.31282 * 109.91473 * 0.44857 * 16 15 14 18 18 C 1.47777 * 126.47284 * 179.82286 * 17 16 15 19 19 C 1.39959 * 120.20085 * 359.66921 * 18 17 16 20 20 C 1.38573 * 117.87700 * 180.02562 * 19 18 17 21 21 C 1.38786 * 118.08457 * 359.97438 * 20 19 18 22 22 N 1.31950 * 120.11887 * 0.02562 * 21 20 19 23 23 N 1.28348 * 122.32980 * 359.97438 * 22 21 20 24 24 N 1.36357 * 126.36778 * 125.50300 * 14 12 2 25 25 C 1.46501 * 127.15372 * 0.02562 * 24 14 12 26 26 C 1.52994 * 109.47135 * 272.82071 * 25 24 14 27 27 C 1.53003 * 117.49982 * 243.62078 * 26 25 24 28 28 C 1.53001 * 117.49774 * 174.99859 * 26 25 24 29 29 H 1.08999 * 109.46461 * 299.99800 * 1 2 3 30 30 H 1.08996 * 109.47163 * 59.99449 * 1 2 3 31 31 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00017 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47112 * 177.42240 * 13 12 2 34 34 H 1.09004 * 109.47191 * 297.41437 * 13 12 2 35 35 H 1.09001 * 109.47717 * 57.42249 * 13 12 2 36 36 H 1.08004 * 121.06642 * 0.03698 * 19 18 17 37 37 H 1.07998 * 120.95375 * 180.02562 * 20 19 18 38 38 H 1.08008 * 119.93819 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47026 * 32.82710 * 25 24 14 40 40 H 1.09002 * 109.46962 * 152.82239 * 25 24 14 41 41 H 1.09002 * 115.55338 * 29.33386 * 26 25 24 42 42 H 1.08995 * 117.49585 * 0.02562 * 27 26 25 43 43 H 1.08998 * 117.49405 * 145.02218 * 27 26 25 44 44 H 1.09001 * 117.50040 * 214.98177 * 28 26 25 45 45 H 1.09003 * 117.50079 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0081 9 1 1.3447 -2.1613 -4.4124 10 1 2.4872 -0.1400 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7946 1.1869 14 6 1.5764 -0.0656 2.3495 15 7 1.7349 1.2031 2.6563 16 7 1.1953 1.4519 3.7959 17 6 0.6682 0.3557 4.2900 18 6 -0.0391 0.2256 5.5810 19 6 -0.1941 1.3394 6.4142 20 6 -0.8648 1.1628 7.6139 21 6 -1.3416 -0.1053 7.9153 22 7 -1.1517 -1.1019 7.0717 23 7 -0.5321 -0.9499 5.9580 24 7 0.8935 -0.6480 3.3760 25 6 0.4850 -2.0508 3.4836 26 6 -0.8738 -2.2398 2.8064 27 6 -2.0485 -2.6698 3.6873 28 6 -1.4221 -3.6648 2.7082 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7082 1.1611 -3.4843 33 1 3.8240 -1.2705 2.1071 34 1 3.8005 -1.3921 0.3315 35 1 3.9182 0.2029 1.1129 36 1 0.1964 2.3058 6.1312 37 1 -1.0129 1.9883 8.2943 38 1 -1.8690 -0.2766 8.8422 39 1 1.2258 -2.6835 2.9947 40 1 0.4084 -2.3273 4.5352 41 1 -1.0859 -1.5610 1.9803 42 1 -1.8533 -2.8177 4.7494 43 1 -3.0337 -2.2737 3.4410 44 1 -1.9952 -3.9233 1.8178 45 1 -0.8150 -4.4676 3.1265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910406937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:04 Heat of formation + Delta-G solvation = 167.700424 kcal Electronic energy + Delta-G solvation = -28710.168127 eV Core-core repulsion = 24958.765372 eV Total energy + Delta-G solvation = -3751.402755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.08319 -41.86150 -38.89931 -38.63646 -35.50529 -35.06032 -34.38743 -33.85606 -31.44509 -30.50348 -28.78805 -27.57837 -26.28839 -25.96275 -25.43418 -23.63368 -23.21168 -22.75112 -21.84831 -21.07349 -18.86143 -18.51436 -18.11067 -17.76718 -17.64920 -17.18014 -16.91699 -16.51074 -15.95507 -15.84720 -15.45777 -15.15567 -15.04884 -14.76077 -14.28236 -14.19893 -14.02433 -13.75006 -13.20001 -13.00654 -12.93165 -12.78688 -12.65624 -12.36414 -12.27097 -12.24624 -12.13754 -12.09756 -11.90089 -11.71841 -11.52207 -11.24290 -11.13847 -11.03429 -10.92026 -10.70962 -10.58182 -9.87565 -9.56994 -8.14897 -6.29084 -0.60731 -0.20017 0.78645 1.14242 1.46164 1.46218 1.57026 1.62275 2.36009 2.42576 2.59584 2.82122 2.95925 3.16558 3.30231 3.51321 3.67781 3.76252 3.78541 3.88662 3.97348 4.05247 4.15134 4.16389 4.25408 4.32403 4.55727 4.58144 4.60054 4.67976 4.78531 4.81749 4.83159 4.87210 4.95546 4.98258 5.01523 5.04317 5.19280 5.25210 5.28826 5.33327 5.43727 5.61682 5.78958 5.93235 6.11180 6.54128 6.80928 7.39710 7.48008 7.54758 8.92362 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.003650 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.927963 B = 7668.422943 C = 8432.591098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.238 3.762 3 H -0.023 1.023 4 C -0.521 4.521 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.261 1.261 12 N -0.466 5.466 13 C 0.052 3.948 14 C 0.382 3.618 15 N -0.349 5.349 16 N -0.282 5.282 17 C 0.205 3.795 18 C 0.131 3.869 19 C -0.092 4.092 20 C -0.087 4.087 21 C 0.050 3.950 22 N -0.261 5.261 23 N -0.246 5.246 24 N -0.441 5.441 25 C 0.148 3.852 26 C -0.188 4.188 27 C -0.157 4.157 28 C -0.148 4.148 29 H -0.006 1.006 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.020 0.980 36 H 0.165 0.835 37 H 0.205 0.795 38 H 0.220 0.780 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.129 -5.461 22.117 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 H -0.005 1.005 4 C -0.559 4.559 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.193 5.193 13 C -0.095 4.095 14 C 0.025 3.975 15 N -0.195 5.195 16 N -0.127 5.127 17 C -0.061 4.061 18 C -0.014 4.014 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.114 4.114 22 N -0.102 5.102 23 N -0.091 5.091 24 N -0.132 5.132 25 C 0.027 3.973 26 C -0.207 4.207 27 C -0.194 4.194 28 C -0.186 4.186 29 H 0.013 0.987 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.039 0.961 36 H 0.182 0.818 37 H 0.222 0.778 38 H 0.237 0.763 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.189 -6.064 21.489 22.924 hybrid contribution 0.330 1.155 -1.093 1.624 sum -4.858 -4.909 20.396 21.534 Atomic orbital electron populations 1.21561 0.97676 0.98926 0.98416 1.19079 0.92109 0.90874 0.84662 1.00511 1.21321 1.32016 1.12851 0.89756 0.90659 1.25773 0.95077 0.95561 1.02149 1.70053 1.37463 1.24163 1.24366 0.85382 0.79116 0.77973 0.78134 1.20037 1.21342 1.18495 1.59126 1.12553 1.49789 0.97790 1.22264 0.83524 1.00654 1.03094 1.22701 0.96238 0.87861 0.90687 1.74718 1.22410 1.13415 1.08912 1.74151 1.12096 1.21947 1.04457 1.22287 1.04957 0.85441 0.93453 1.19698 0.97070 0.94078 0.90570 1.22567 0.96251 0.99547 0.93834 1.22922 0.92863 1.00231 0.95522 1.25152 0.95654 0.89798 1.00815 1.72970 1.09274 1.30007 0.97943 1.73162 1.06104 1.19910 1.09909 1.46523 1.40308 1.11782 1.14555 1.21735 0.95764 0.75914 1.03903 1.22336 0.94578 1.01214 1.02602 1.23062 0.95838 1.02629 0.97895 1.23011 1.02758 0.91129 1.01665 0.98663 0.91477 0.94278 0.92770 0.91002 0.88744 0.96124 0.81765 0.77803 0.76339 0.88153 0.85748 0.90680 0.86899 0.89629 0.88312 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 8.39 71.99 0.60 -5.07 16 2 C 0.24 12.63 1.96 44.17 0.09 12.71 16 3 H -0.02 -1.40 8.01 -2.39 -0.02 -1.42 16 4 C -0.52 -28.05 7.95 25.60 0.20 -27.84 16 5 H 0.08 3.85 6.40 -2.91 -0.02 3.83 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 12 N -0.47 -20.93 4.65 -711.15 -3.30 -24.24 16 13 C 0.05 2.06 9.13 127.69 1.17 3.22 16 14 C 0.38 16.65 5.05 260.19 1.31 17.96 16 15 N -0.35 -16.42 12.00 -58.11 -0.70 -17.11 16 16 N -0.28 -11.67 11.93 -50.82 -0.61 -12.28 16 17 C 0.21 7.34 7.83 136.17 1.07 8.41 16 18 C 0.13 3.59 6.83 41.92 0.29 3.87 16 19 C -0.09 -1.78 9.84 22.77 0.22 -1.55 16 20 C -0.09 -0.87 10.20 22.48 0.23 -0.64 16 21 C 0.05 0.56 11.31 84.81 0.96 1.52 16 22 N -0.26 -5.31 11.50 -57.13 -0.66 -5.96 16 23 N -0.25 -6.27 8.23 -48.55 -0.40 -6.67 16 24 N -0.44 -16.32 2.83 -516.90 -1.46 -17.78 16 25 C 0.15 4.49 6.00 86.38 0.52 5.01 16 26 C -0.19 -5.71 6.01 -10.79 -0.06 -5.78 16 27 C -0.16 -3.89 10.10 30.60 0.31 -3.58 16 28 C -0.15 -3.48 10.25 30.60 0.31 -3.17 16 29 H -0.01 -0.30 7.22 -2.39 -0.02 -0.32 16 30 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 31 H 0.04 1.96 7.43 -2.39 -0.02 1.94 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 33 H 0.07 2.42 8.10 -2.39 -0.02 2.40 16 34 H 0.09 3.66 6.33 -2.38 -0.02 3.65 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.16 3.04 7.93 -2.91 -0.02 3.02 16 37 H 0.20 0.09 8.06 -2.91 -0.02 0.06 16 38 H 0.22 0.41 8.06 -2.91 -0.02 0.38 16 39 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.12 3.37 5.87 -2.39 -0.01 3.36 16 41 H 0.07 2.88 6.94 -2.39 -0.02 2.87 16 42 H 0.11 2.67 7.34 -2.39 -0.02 2.65 16 43 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.12 2.24 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -73.03 372.27 3.82 -69.21 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.01 Total: 17.13 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 7.67 Total: 6.28 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -6.88 Total: -137.41 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.03 3.82 -69.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910406937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.911 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds