Wall clock time and date at job start Tue Mar 31 2020 15:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47171 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00659 * 2 1 3 5 5 H 1.07998 * 120.00166 * 119.99812 * 4 2 1 6 6 C 1.37877 * 119.99776 * 299.99761 * 4 2 1 7 7 N 1.31506 * 119.99986 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47043 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46760 * 119.99706 * 8 6 4 11 11 H 1.48493 * 109.47319 * 239.99936 * 8 6 4 12 12 N 1.46905 * 109.46956 * 240.00353 * 2 1 3 13 13 C 1.46895 * 110.99970 * 306.04743 * 12 2 1 14 14 C 1.38296 * 110.99612 * 69.99971 * 12 2 1 15 15 N 1.31480 * 126.36870 * 293.45159 * 14 12 2 16 16 N 1.28518 * 110.06975 * 180.02562 * 15 14 12 17 17 C 1.31289 * 109.91433 * 0.02562 * 16 15 14 18 18 C 1.47776 * 126.47112 * 179.97438 * 17 16 15 19 19 C 1.39956 * 120.20066 * 0.02562 * 18 17 16 20 20 C 1.38573 * 117.87767 * 180.02562 * 19 18 17 21 21 C 1.38786 * 118.08303 * 0.02562 * 20 19 18 22 22 N 1.31956 * 120.11727 * 359.97438 * 21 20 19 23 23 N 1.28347 * 122.33008 * 0.02562 * 22 21 20 24 24 N 1.36366 * 126.36310 * 113.77375 * 14 12 2 25 25 C 1.46504 * 127.15423 * 359.97438 * 24 14 12 26 26 C 1.52994 * 109.47351 * 274.71648 * 25 24 14 27 27 C 1.53007 * 117.50008 * 243.62468 * 26 25 24 28 28 C 1.52998 * 117.49937 * 175.00359 * 26 25 24 29 29 H 1.08997 * 109.46822 * 299.99199 * 1 2 3 30 30 H 1.08993 * 109.47029 * 59.99461 * 1 2 3 31 31 H 1.09000 * 109.46867 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99777 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.46999 * 189.49202 * 13 12 2 34 34 H 1.08998 * 109.47373 * 309.49526 * 13 12 2 35 35 H 1.09003 * 109.47246 * 69.49606 * 13 12 2 36 36 H 1.08002 * 121.06608 * 0.04357 * 19 18 17 37 37 H 1.07990 * 120.95902 * 180.02562 * 20 19 18 38 38 H 1.08008 * 119.94081 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47234 * 34.72187 * 25 24 14 40 40 H 1.08998 * 109.46615 * 154.71769 * 25 24 14 41 41 H 1.09005 * 115.54907 * 29.32974 * 26 25 24 42 42 H 1.08997 * 117.49509 * 359.97438 * 27 26 25 43 43 H 1.09000 * 117.49898 * 145.01569 * 27 26 25 44 44 H 1.08997 * 117.49815 * 214.97814 * 28 26 25 45 45 H 1.08995 * 117.50218 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3214 -1.1208 4.0078 9 1 3.1464 -2.2874 3.6035 10 1 3.1467 -0.1879 4.8164 11 1 1.1661 -1.5871 4.8159 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0353 -1.3080 14 6 1.7685 0.0512 -2.3382 15 7 0.5866 0.3303 -2.8421 16 7 0.7170 1.0408 -3.9050 17 6 1.9895 1.2579 -4.1445 18 6 2.5518 2.0304 -5.2718 19 6 1.7021 2.6174 -6.2164 20 6 2.2809 3.3305 -7.2540 21 6 3.6654 3.4186 -7.2937 22 7 4.3930 2.8339 -6.3610 23 7 3.8677 2.1710 -5.3956 24 7 2.7009 0.6261 -3.1504 25 6 4.1570 0.5823 -2.9953 26 6 4.6031 1.7000 -2.0506 27 6 5.5061 2.7930 -2.6259 28 6 6.0830 1.7510 -1.6657 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7088 1.1609 3.4845 33 1 1.9356 -2.5871 -2.1032 34 1 1.5606 -2.5642 -0.3633 35 1 0.3721 -1.9512 -1.5380 36 1 0.6294 2.5181 -6.1389 37 1 1.6722 3.8040 -8.0100 38 1 4.1481 3.9666 -8.0894 39 1 4.4495 -0.3824 -2.5806 40 1 4.6301 0.7182 -3.9679 41 1 3.8758 1.9942 -1.2939 42 1 5.7826 2.7156 -3.6774 43 1 5.3728 3.8067 -2.2479 44 1 6.3293 2.0791 -0.6558 45 1 6.7388 0.9880 -2.0851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910406943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:08 Heat of formation + Delta-G solvation = 188.518824 kcal Electronic energy + Delta-G solvation = -28660.922762 eV Core-core repulsion = 24910.422761 eV Total energy + Delta-G solvation = -3750.500001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63246 -41.00784 -37.47326 -37.30715 -34.19473 -33.66776 -33.18643 -32.63545 -29.46774 -28.53423 -27.43909 -25.54730 -25.33530 -24.94670 -24.51403 -22.20154 -21.65555 -21.35302 -20.71664 -19.32147 -17.79232 -17.26560 -16.88581 -16.48925 -16.03626 -15.94258 -15.43905 -15.03238 -14.63299 -14.60265 -14.04078 -14.01694 -13.61258 -13.43579 -13.08266 -12.90001 -12.40781 -11.80400 -11.62457 -11.45548 -11.31533 -11.28316 -11.21989 -10.97474 -10.85592 -10.65505 -10.59902 -10.53310 -10.47533 -10.33297 -10.12703 -10.08412 -9.96409 -9.68399 -9.65373 -8.94032 -8.48074 -8.43801 -7.79224 -6.08672 -4.14634 0.31723 0.55400 2.11562 2.50115 3.01227 3.26148 3.34350 3.37902 3.45172 3.52917 3.95158 4.13014 4.29345 4.31049 4.47669 4.57273 4.67737 4.79964 4.87868 5.01166 5.18268 5.23501 5.31889 5.38186 5.49761 5.57780 5.67845 5.70614 5.83670 5.88385 5.90797 6.05713 6.09951 6.26772 6.29354 6.35398 6.46278 6.56519 6.77563 6.90219 7.01327 7.13675 7.44537 7.59534 7.73600 7.89969 8.22383 8.38147 8.41452 8.88679 8.97518 9.50238 10.98090 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.003783 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.600239 B = 7399.221395 C = 8346.223730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.227 3.773 3 H 0.036 0.964 4 C -0.505 4.505 5 H 0.067 0.933 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.469 5.469 13 C 0.044 3.956 14 C 0.396 3.604 15 N -0.307 5.307 16 N -0.257 5.257 17 C 0.183 3.817 18 C 0.166 3.834 19 C -0.083 4.083 20 C -0.113 4.113 21 C 0.035 3.965 22 N -0.236 5.236 23 N -0.234 5.234 24 N -0.442 5.442 25 C 0.143 3.857 26 C -0.162 4.162 27 C -0.174 4.174 28 C -0.164 4.164 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 3.982 -17.973 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.123 3.877 3 H 0.053 0.947 4 C -0.543 4.543 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.196 5.196 13 C -0.104 4.104 14 C 0.041 3.959 15 N -0.153 5.153 16 N -0.102 5.102 17 C -0.081 4.081 18 C 0.021 3.979 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.130 4.130 22 N -0.077 5.077 23 N -0.079 5.079 24 N -0.133 5.133 25 C 0.021 3.979 26 C -0.181 4.181 27 C -0.211 4.211 28 C -0.202 4.202 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.585 3.719 -17.307 18.887 hybrid contribution -0.609 0.110 0.539 0.821 sum 5.975 3.829 -16.768 18.208 Atomic orbital electron populations 1.22472 0.98822 1.00187 1.01998 1.19409 0.91328 0.93801 0.83135 0.94658 1.21015 1.31362 1.12895 0.89069 0.91529 1.24900 0.95005 0.95073 0.98998 1.69915 1.36411 1.22833 1.23554 0.86412 0.78559 0.79616 0.82659 1.19618 1.21053 1.21024 1.59381 1.59313 1.02601 0.98272 1.22279 0.97644 0.87845 1.02612 1.22954 0.83603 0.96145 0.93170 1.74884 1.20002 1.15096 1.05321 1.74253 1.12539 1.12676 1.10769 1.21559 0.89222 1.03909 0.93453 1.19735 0.91728 0.94515 0.91888 1.22370 1.02891 0.93811 0.92279 1.22390 0.96146 0.97306 0.98387 1.24366 0.92532 0.97465 0.98609 1.73020 1.31852 1.04213 0.98608 1.73238 1.09480 1.10909 1.14259 1.46391 1.08946 1.38388 1.19537 1.21618 0.74869 0.99980 1.01434 1.22436 0.94739 0.99120 1.01847 1.23096 1.03685 0.94620 0.99697 1.22878 0.94758 1.02103 1.00461 0.89420 0.94589 0.94857 0.92855 0.93599 0.88981 0.94012 0.81952 0.82645 0.80870 0.88154 0.87082 0.87193 0.87666 0.89519 0.88512 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 8.17 37.16 0.30 -4.07 16 2 C 0.23 5.67 2.28 -68.86 -0.16 5.51 16 3 H 0.04 0.99 8.05 -51.93 -0.42 0.58 16 4 C -0.50 -13.23 7.83 -34.44 -0.27 -13.50 16 5 H 0.07 1.72 7.17 -52.49 -0.38 1.34 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.47 -10.09 4.72 -176.13 -0.83 -10.92 16 13 C 0.04 0.85 8.53 60.06 0.51 1.36 16 14 C 0.40 8.21 6.25 -319.08 -1.99 6.22 16 15 N -0.31 -6.60 9.81 30.28 0.30 -6.30 16 16 N -0.26 -4.98 11.93 32.59 0.39 -4.59 16 17 C 0.18 3.19 7.83 -153.74 -1.20 1.98 16 18 C 0.17 2.34 6.83 -82.85 -0.57 1.77 16 19 C -0.08 -0.88 9.84 -38.81 -0.38 -1.26 16 20 C -0.11 -0.83 10.20 -39.26 -0.40 -1.23 16 21 C 0.03 0.28 11.31 -17.30 -0.20 0.09 16 22 N -0.24 -2.78 11.50 30.59 0.35 -2.43 16 23 N -0.23 -3.19 8.44 33.30 0.28 -2.91 16 24 N -0.44 -8.00 2.83 -114.73 -0.32 -8.32 16 25 C 0.14 2.22 6.05 -4.04 -0.02 2.20 16 26 C -0.16 -2.55 6.01 -90.62 -0.54 -3.09 16 27 C -0.17 -2.33 10.18 -26.73 -0.27 -2.60 16 28 C -0.16 -2.16 10.25 -26.73 -0.27 -2.43 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.04 0.88 5.99 -51.93 -0.31 0.57 16 31 H 0.03 0.79 6.54 -51.93 -0.34 0.45 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.09 1.81 6.65 -51.93 -0.35 1.47 16 35 H 0.04 0.83 6.58 -51.93 -0.34 0.49 16 36 H 0.16 1.57 7.93 -52.49 -0.42 1.15 16 37 H 0.16 0.54 8.06 -52.49 -0.42 0.11 16 38 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 40 H 0.11 1.58 5.78 -51.93 -0.30 1.28 16 41 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 42 H 0.11 1.38 7.52 -51.93 -0.39 0.99 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -30.83 369.83 -10.29 -41.12 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.07 Total: 4.82 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -5.56 Total: -7.50 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.79 Total: -59.71 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.83 -10.29 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910406943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.638 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds