Wall clock time and date at job start Tue Mar 31 2020 15:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47171 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00659 * 2 1 3 5 5 H 1.07998 * 120.00166 * 119.99812 * 4 2 1 6 6 C 1.37877 * 119.99776 * 299.99761 * 4 2 1 7 7 N 1.31506 * 119.99986 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47043 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46760 * 119.99706 * 8 6 4 11 11 H 1.48493 * 109.47319 * 239.99936 * 8 6 4 12 12 N 1.46905 * 109.46956 * 240.00353 * 2 1 3 13 13 C 1.46895 * 110.99970 * 306.04743 * 12 2 1 14 14 C 1.38296 * 110.99612 * 69.99971 * 12 2 1 15 15 N 1.31480 * 126.36870 * 293.45159 * 14 12 2 16 16 N 1.28518 * 110.06975 * 180.02562 * 15 14 12 17 17 C 1.31289 * 109.91433 * 0.02562 * 16 15 14 18 18 C 1.47776 * 126.47112 * 179.97438 * 17 16 15 19 19 C 1.39956 * 120.20066 * 0.02562 * 18 17 16 20 20 C 1.38573 * 117.87767 * 180.02562 * 19 18 17 21 21 C 1.38786 * 118.08303 * 0.02562 * 20 19 18 22 22 N 1.31956 * 120.11727 * 359.97438 * 21 20 19 23 23 N 1.28347 * 122.33008 * 0.02562 * 22 21 20 24 24 N 1.36366 * 126.36310 * 113.77375 * 14 12 2 25 25 C 1.46504 * 127.15423 * 359.97438 * 24 14 12 26 26 C 1.52994 * 109.47351 * 274.71648 * 25 24 14 27 27 C 1.53007 * 117.50008 * 243.62468 * 26 25 24 28 28 C 1.52998 * 117.49937 * 175.00359 * 26 25 24 29 29 H 1.08997 * 109.46822 * 299.99199 * 1 2 3 30 30 H 1.08993 * 109.47029 * 59.99461 * 1 2 3 31 31 H 1.09000 * 109.46867 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99777 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.46999 * 189.49202 * 13 12 2 34 34 H 1.08998 * 109.47373 * 309.49526 * 13 12 2 35 35 H 1.09003 * 109.47246 * 69.49606 * 13 12 2 36 36 H 1.08002 * 121.06608 * 0.04357 * 19 18 17 37 37 H 1.07990 * 120.95902 * 180.02562 * 20 19 18 38 38 H 1.08008 * 119.94081 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47234 * 34.72187 * 25 24 14 40 40 H 1.08998 * 109.46615 * 154.71769 * 25 24 14 41 41 H 1.09005 * 115.54907 * 29.32974 * 26 25 24 42 42 H 1.08997 * 117.49509 * 359.97438 * 27 26 25 43 43 H 1.09000 * 117.49898 * 145.01569 * 27 26 25 44 44 H 1.08997 * 117.49815 * 214.97814 * 28 26 25 45 45 H 1.08995 * 117.50218 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3214 -1.1208 4.0078 9 1 3.1464 -2.2874 3.6035 10 1 3.1467 -0.1879 4.8164 11 1 1.1661 -1.5871 4.8159 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0353 -1.3080 14 6 1.7685 0.0512 -2.3382 15 7 0.5866 0.3303 -2.8421 16 7 0.7170 1.0408 -3.9050 17 6 1.9895 1.2579 -4.1445 18 6 2.5518 2.0304 -5.2718 19 6 1.7021 2.6174 -6.2164 20 6 2.2809 3.3305 -7.2540 21 6 3.6654 3.4186 -7.2937 22 7 4.3930 2.8339 -6.3610 23 7 3.8677 2.1710 -5.3956 24 7 2.7009 0.6261 -3.1504 25 6 4.1570 0.5823 -2.9953 26 6 4.6031 1.7000 -2.0506 27 6 5.5061 2.7930 -2.6259 28 6 6.0830 1.7510 -1.6657 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7088 1.1609 3.4845 33 1 1.9356 -2.5871 -2.1032 34 1 1.5606 -2.5642 -0.3633 35 1 0.3721 -1.9512 -1.5380 36 1 0.6294 2.5181 -6.1389 37 1 1.6722 3.8040 -8.0100 38 1 4.1481 3.9666 -8.0894 39 1 4.4495 -0.3824 -2.5806 40 1 4.6301 0.7182 -3.9679 41 1 3.8758 1.9942 -1.2939 42 1 5.7826 2.7156 -3.6774 43 1 5.3728 3.8067 -2.2479 44 1 6.3293 2.0791 -0.6558 45 1 6.7388 0.9880 -2.0851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910406943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:07 Heat of formation + Delta-G solvation = 171.952726 kcal Electronic energy + Delta-G solvation = -28661.641122 eV Core-core repulsion = 24910.422761 eV Total energy + Delta-G solvation = -3751.218361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.07468 -41.86293 -39.06636 -38.67639 -35.51435 -35.02155 -34.38643 -33.86949 -31.15202 -30.15938 -28.75842 -27.33496 -27.09157 -25.96261 -25.50606 -23.37662 -23.19084 -22.68198 -22.08116 -20.91355 -18.91089 -18.42857 -18.14815 -17.75304 -17.57281 -17.21770 -16.94360 -16.52919 -15.97229 -15.86898 -15.47211 -15.12543 -14.85969 -14.74525 -14.36383 -14.21571 -14.03685 -13.43623 -13.13033 -13.06459 -13.02475 -12.75877 -12.66186 -12.46827 -12.38234 -12.22226 -12.11067 -12.06742 -11.84774 -11.69860 -11.56623 -11.24223 -11.08986 -10.98148 -10.90445 -10.70426 -10.54072 -9.86390 -9.52924 -8.14521 -6.27790 -0.60702 -0.19725 0.78359 1.14958 1.43753 1.45531 1.57488 1.62058 2.36284 2.42714 2.59659 2.80210 2.98765 3.15967 3.29921 3.51423 3.65710 3.76471 3.78754 3.87991 3.96390 4.04055 4.14531 4.15369 4.24619 4.34083 4.54868 4.59705 4.65733 4.67644 4.76324 4.83035 4.93846 4.96415 4.99995 5.01620 5.05873 5.09482 5.15354 5.24661 5.25893 5.34158 5.56997 5.60720 5.74976 5.99661 6.19095 6.55629 6.81751 7.41166 7.47568 7.54907 8.92557 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.003783 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.600239 B = 7399.221395 C = 8346.223730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.241 3.759 3 H -0.008 1.008 4 C -0.513 4.513 5 H 0.070 0.930 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.467 5.467 13 C 0.047 3.953 14 C 0.372 3.628 15 N -0.334 5.334 16 N -0.283 5.283 17 C 0.205 3.795 18 C 0.131 3.869 19 C -0.091 4.091 20 C -0.087 4.087 21 C 0.049 3.951 22 N -0.262 5.262 23 N -0.249 5.249 24 N -0.443 5.443 25 C 0.149 3.851 26 C -0.186 4.186 27 C -0.156 4.156 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.166 0.834 37 H 0.206 0.794 38 H 0.220 0.780 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.871 4.374 -20.575 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.136 3.864 3 H 0.010 0.990 4 C -0.552 4.552 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.210 1.210 11 H -0.207 1.207 12 N -0.192 5.192 13 C -0.100 4.100 14 C 0.015 3.985 15 N -0.180 5.180 16 N -0.127 5.127 17 C -0.062 4.062 18 C -0.014 4.014 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.115 4.115 22 N -0.103 5.103 23 N -0.093 5.093 24 N -0.133 5.133 25 C 0.027 3.973 26 C -0.205 4.205 27 C -0.193 4.193 28 C -0.186 4.186 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.184 0.816 37 H 0.223 0.777 38 H 0.237 0.763 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.397 4.098 -19.928 22.010 hybrid contribution -1.117 0.177 1.079 1.563 sum 7.280 4.275 -18.849 20.654 Atomic orbital electron populations 1.22264 0.99094 0.99944 1.00438 1.19016 0.90831 0.91838 0.84764 0.99016 1.21255 1.31280 1.12927 0.89698 0.91138 1.25733 0.95077 0.95667 1.02022 1.70062 1.37545 1.24275 1.24181 0.85365 0.78033 0.78665 0.78724 1.18413 1.20973 1.20730 1.59217 1.59224 1.03116 0.97690 1.22293 0.97361 0.86997 1.03305 1.22836 0.84271 0.97680 0.93663 1.74732 1.20895 1.16017 1.06339 1.74156 1.13811 1.13912 1.10811 1.22276 0.88650 1.01928 0.93322 1.19711 0.92878 0.96583 0.92265 1.22570 1.02945 0.94041 0.92541 1.22928 0.96243 0.94884 0.97469 1.25159 0.93054 0.95348 0.97902 1.72972 1.32606 1.05287 0.99401 1.73144 1.09157 1.11620 1.15422 1.46543 1.09654 1.37833 1.19240 1.21732 0.73565 0.99843 1.02111 1.22239 0.95355 1.00942 1.01949 1.23070 1.01874 0.94121 1.00199 1.23005 0.92763 1.02187 1.00616 0.92022 0.94906 0.94271 0.92875 0.90986 0.89328 0.94896 0.81610 0.77746 0.76348 0.88236 0.85457 0.91688 0.86718 0.89607 0.88547 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.32 8.17 71.98 0.59 -7.73 16 2 C 0.24 12.67 2.28 44.17 0.10 12.77 16 3 H -0.01 -0.49 8.05 -2.39 -0.02 -0.51 16 4 C -0.51 -27.66 7.83 25.60 0.20 -27.46 16 5 H 0.07 3.68 7.17 -2.91 -0.02 3.66 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 8 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.47 -20.93 4.72 -711.14 -3.36 -24.29 16 13 C 0.05 1.88 8.53 127.69 1.09 2.97 16 14 C 0.37 16.16 6.25 260.18 1.63 17.79 16 15 N -0.33 -15.09 9.81 -58.10 -0.57 -15.66 16 16 N -0.28 -11.40 11.93 -50.81 -0.61 -12.01 16 17 C 0.20 7.31 7.83 136.17 1.07 8.38 16 18 C 0.13 3.60 6.83 41.92 0.29 3.88 16 19 C -0.09 -1.74 9.84 22.77 0.22 -1.52 16 20 C -0.09 -0.87 10.20 22.48 0.23 -0.64 16 21 C 0.05 0.57 11.31 84.81 0.96 1.53 16 22 N -0.26 -5.43 11.50 -57.13 -0.66 -6.08 16 23 N -0.25 -6.45 8.44 -48.55 -0.41 -6.86 16 24 N -0.44 -16.64 2.83 -516.88 -1.46 -18.10 16 25 C 0.15 4.70 6.05 86.38 0.52 5.23 16 26 C -0.19 -6.03 6.01 -10.79 -0.06 -6.09 16 27 C -0.16 -4.09 10.18 30.60 0.31 -3.78 16 28 C -0.15 -3.79 10.25 30.59 0.31 -3.47 16 29 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 30 H 0.03 1.70 5.99 -2.39 -0.01 1.69 16 31 H 0.04 1.94 6.54 -2.39 -0.02 1.93 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.09 3.52 6.65 -2.39 -0.02 3.51 16 35 H 0.03 1.34 6.58 -2.39 -0.02 1.32 16 36 H 0.17 2.99 7.93 -2.91 -0.02 2.97 16 37 H 0.21 0.06 8.06 -2.92 -0.02 0.04 16 38 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.13 3.57 5.78 -2.39 -0.01 3.56 16 41 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 42 H 0.11 2.82 7.52 -2.39 -0.02 2.81 16 43 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -72.04 369.83 4.12 -67.92 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 1.02 Total: 20.24 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 7.90 Total: 3.07 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -6.82 Total: -136.21 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -72.04 4.12 -67.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910406943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.876 kcal (2) G-P(sol) polarization free energy of solvation -72.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds