Wall clock time and date at job start Tue Mar 31 2020 15:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46842 * 2 1 4 4 C 1.46493 * 119.99833 * 269.99657 * 3 2 1 5 5 C 1.50698 * 109.47410 * 269.99976 * 4 3 2 6 6 H 1.08001 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00154 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00041 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00008 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47153 * 120.00194 * 9 7 5 12 12 H 1.48503 * 109.46895 * 240.00103 * 9 7 5 13 13 C 1.34779 * 119.99649 * 89.99890 * 3 2 1 14 14 O 1.21517 * 119.99313 * 179.97438 * 13 3 2 15 15 O 1.34632 * 120.00557 * 359.97438 * 13 3 2 16 16 C 1.45195 * 117.00423 * 179.97438 * 15 13 3 17 17 C 1.53495 * 114.20911 * 210.00371 * 16 15 13 18 18 N 1.47066 * 87.98658 * 220.14598 * 17 16 15 19 19 C 1.34780 * 136.06263 * 206.86221 * 18 17 16 20 20 O 1.21510 * 119.99558 * 359.97438 * 19 18 17 21 21 O 1.34630 * 120.00318 * 180.02562 * 19 18 17 22 22 C 1.45202 * 116.99916 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47421 * 59.99637 * 22 21 19 24 24 C 1.53008 * 109.46804 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.46950 * 299.99195 * 22 21 19 26 26 C 1.47067 * 87.88528 * 27.11900 * 18 17 16 27 27 H 1.09000 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47454 * 299.99991 * 1 2 3 29 29 H 1.08995 * 109.47239 * 60.00362 * 1 2 3 30 30 H 1.08998 * 109.47454 * 240.00009 * 2 1 3 31 31 H 1.09008 * 109.47000 * 119.99842 * 2 1 3 32 32 H 1.08994 * 109.47416 * 30.00367 * 4 3 2 33 33 H 1.09004 * 109.46932 * 149.99739 * 4 3 2 34 34 H 0.97002 * 120.00411 * 180.02562 * 8 7 5 35 35 H 1.09006 * 113.28053 * 343.07001 * 16 15 13 36 36 H 1.09005 * 113.46950 * 105.37164 * 17 16 15 37 37 H 1.08994 * 113.52293 * 334.93648 * 17 16 15 38 38 H 1.09001 * 109.47173 * 59.99941 * 23 22 21 39 39 H 1.09006 * 109.46940 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.46778 * 299.99641 * 23 22 21 41 41 H 1.08998 * 109.47593 * 59.99624 * 24 22 21 42 42 H 1.09000 * 109.46397 * 179.97438 * 24 22 21 43 43 H 1.08996 * 109.46866 * 299.99118 * 24 22 21 44 44 H 1.09002 * 109.47068 * 59.99877 * 25 22 21 45 45 H 1.08992 * 109.47463 * 180.02562 * 25 22 21 46 46 H 1.09005 * 109.47649 * 300.00807 * 25 22 21 47 47 H 1.09007 * 113.46858 * 87.65629 * 26 18 17 48 48 H 1.08993 * 113.47208 * 218.09965 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1493 2.3905 -2.8773 8 7 3.3496 3.1273 -3.6170 9 14 5.9134 2.0965 -3.4169 10 1 6.6008 1.2406 -2.4168 11 1 5.9205 1.4184 -4.7380 12 1 6.6215 3.3974 -3.5244 13 6 2.2428 2.0166 1.1673 14 8 2.6483 3.1621 1.1672 15 8 2.0180 1.3821 2.3332 16 6 2.2821 2.1275 3.5510 17 6 2.7168 1.2583 4.7391 18 7 1.8769 2.1055 5.5993 19 6 1.8709 2.4657 6.8980 20 8 2.7291 2.0459 7.6489 21 8 0.9134 3.2897 7.3637 22 6 0.9696 3.6356 8.7728 23 6 2.2963 4.3355 9.0737 24 6 -0.1902 4.5734 9.1142 25 6 0.8618 2.3629 9.6150 26 6 1.0426 2.3815 4.4201 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5817 1.6877 -2.0283 33 1 2.0954 3.1410 -1.1384 34 1 3.6756 3.5178 -4.4429 35 1 2.9036 3.0085 3.3906 36 1 3.7809 1.3314 4.9641 37 1 2.3698 0.2272 4.6738 38 1 2.3731 5.2423 8.4736 39 1 2.3386 4.5948 10.1316 40 1 3.1228 3.6677 8.8304 41 1 -1.1357 4.0752 8.8998 42 1 -0.1483 4.8327 10.1721 43 1 -0.1130 5.4801 8.5142 44 1 1.6881 1.6951 9.3716 45 1 0.9034 2.6225 10.6728 46 1 -0.0835 1.8641 9.4006 47 1 0.2491 1.6496 4.2688 48 1 0.6831 3.4093 4.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914061594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:12 Heat of formation + Delta-G solvation = -114.136454 kcal Electronic energy + Delta-G solvation = -28672.584606 eV Core-core repulsion = 24537.066066 eV Total energy + Delta-G solvation = -4135.518541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16561 -40.20550 -39.01590 -36.86527 -35.98046 -35.12254 -34.27093 -32.77584 -30.18172 -29.58533 -27.71099 -27.65850 -27.19407 -26.36667 -23.83989 -23.05286 -22.56601 -21.05144 -19.95269 -19.45508 -18.05838 -17.46959 -16.94674 -16.82654 -16.49644 -16.08962 -15.79423 -15.27304 -15.07630 -14.58940 -14.39431 -14.18680 -13.79559 -13.66243 -13.41904 -13.21413 -12.96442 -12.78524 -12.65293 -12.51130 -12.19941 -12.18408 -12.11889 -11.93889 -11.81355 -11.65096 -11.58604 -11.42144 -11.21923 -10.93343 -10.74904 -10.63405 -10.58590 -10.32786 -10.19394 -10.13755 -9.74316 -9.63240 -9.10015 -8.48749 -7.84592 -6.09854 -4.14772 1.59893 2.54381 2.83925 3.27842 3.35563 3.39378 3.45596 3.54047 4.14423 4.32903 4.41271 4.43904 4.46271 4.59972 4.71757 4.89944 5.03119 5.16672 5.22498 5.24116 5.25081 5.27332 5.38691 5.39342 5.44212 5.45719 5.55320 5.56290 5.60721 5.67760 5.69990 5.82138 5.99513 6.03848 6.12597 6.23501 6.24104 6.52831 6.58987 7.02437 7.35449 7.40099 7.41487 7.86204 8.08155 8.14548 8.26824 8.84200 9.06043 9.50851 10.98268 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.002314 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.564546 B =12096.413180 C =12589.699237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 N -0.573 5.573 4 C 0.259 3.741 5 C -0.529 4.529 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.639 3.361 14 O -0.567 6.567 15 O -0.357 6.357 16 C 0.072 3.928 17 C 0.131 3.869 18 N -0.632 5.632 19 C 0.690 3.310 20 O -0.564 6.564 21 O -0.359 6.359 22 C 0.135 3.865 23 C -0.185 4.185 24 C -0.140 4.140 25 C -0.183 4.183 26 C 0.092 3.908 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.098 0.902 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 -3.087 21.994 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.013 4.013 3 N -0.312 5.312 4 C 0.141 3.859 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.392 3.608 14 O -0.455 6.455 15 O -0.271 6.271 16 C 0.014 3.986 17 C 0.010 3.990 18 N -0.376 5.376 19 C 0.446 3.554 20 O -0.454 6.454 21 O -0.274 6.274 22 C 0.098 3.902 23 C -0.242 4.242 24 C -0.198 4.198 25 C -0.240 4.240 26 C -0.031 4.031 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.218 -2.636 22.394 24.000 hybrid contribution 0.897 -0.082 -0.329 0.959 sum -7.321 -2.717 22.065 23.406 Atomic orbital electron populations 1.22178 0.96679 1.01424 1.02206 1.21417 0.93623 0.83256 1.02975 1.47365 1.65657 1.13953 1.04195 1.19397 0.96684 0.93549 0.76251 1.21477 0.96808 1.32091 1.06457 0.92207 1.24925 0.97989 0.94813 0.96309 1.69935 1.35669 1.33305 1.14368 0.86417 0.84429 0.78091 0.78344 1.19749 1.20915 1.20853 1.18145 0.78093 0.83658 0.80882 1.90964 1.51135 1.17291 1.86110 1.86273 1.81992 1.45110 1.13747 1.24226 0.97587 0.96443 0.80367 1.23180 0.97115 0.95631 0.83085 1.47513 1.33705 1.51402 1.04946 1.17004 0.80349 0.77817 0.80200 1.90912 1.40268 1.59507 1.54674 1.86325 1.49770 1.61673 1.29620 1.22120 0.97060 0.95342 0.75638 1.22531 0.97734 1.01499 1.02400 1.21861 0.96838 0.98943 1.02115 1.22519 1.03865 0.97761 0.99904 1.23528 0.95602 1.03534 0.80419 0.92167 0.92910 0.92248 0.89854 0.91081 0.94116 0.93559 0.92660 0.85081 0.88833 0.88146 0.91993 0.91068 0.89380 0.91442 0.90063 0.91335 0.89411 0.91056 0.92155 0.88425 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.78 6.13 -4.04 -0.02 1.75 16 3 N -0.57 -11.92 2.46 -180.87 -0.44 -12.36 16 4 C 0.26 6.52 5.16 -5.20 -0.03 6.49 16 5 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.64 13.19 8.39 54.06 0.45 13.64 16 14 O -0.57 -13.72 15.13 -19.29 -0.29 -14.01 16 15 O -0.36 -5.69 9.11 -40.30 -0.37 -6.05 16 16 C 0.07 0.96 4.62 -26.22 -0.12 0.84 16 17 C 0.13 1.48 8.47 -8.51 -0.07 1.40 16 18 N -0.63 -7.81 3.69 -191.11 -0.71 -8.51 16 19 C 0.69 9.35 8.26 54.06 0.45 9.80 16 20 O -0.56 -8.54 12.66 -19.28 -0.24 -8.79 16 21 O -0.36 -4.39 9.91 -40.30 -0.40 -4.79 16 22 C 0.13 1.30 1.13 -90.62 -0.10 1.20 16 23 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 24 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 25 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 26 C 0.09 1.04 8.51 -8.51 -0.07 0.96 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 31 H 0.07 1.02 7.38 -51.92 -0.38 0.63 16 32 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.13 1.97 7.06 -51.93 -0.37 1.60 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -33.00 398.33 -7.39 -40.39 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.05 Total: -0.70 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 1.39 Total: 17.53 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.41 Total: -46.02 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.30 Total: -33.64 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.00 -7.39 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914061594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.743 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds