Wall clock time and date at job start Tue Mar 31 2020 15:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46842 * 2 1 4 4 C 1.46493 * 119.99833 * 269.99657 * 3 2 1 5 5 C 1.50698 * 109.47410 * 269.99976 * 4 3 2 6 6 H 1.08001 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00154 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00041 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00008 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47153 * 120.00194 * 9 7 5 12 12 H 1.48503 * 109.46895 * 240.00103 * 9 7 5 13 13 C 1.34779 * 119.99649 * 89.99890 * 3 2 1 14 14 O 1.21517 * 119.99313 * 179.97438 * 13 3 2 15 15 O 1.34632 * 120.00557 * 359.97438 * 13 3 2 16 16 C 1.45195 * 117.00423 * 179.97438 * 15 13 3 17 17 C 1.53495 * 114.20911 * 210.00371 * 16 15 13 18 18 N 1.47066 * 87.98658 * 220.14598 * 17 16 15 19 19 C 1.34780 * 136.06263 * 206.86221 * 18 17 16 20 20 O 1.21510 * 119.99558 * 359.97438 * 19 18 17 21 21 O 1.34630 * 120.00318 * 180.02562 * 19 18 17 22 22 C 1.45202 * 116.99916 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47421 * 59.99637 * 22 21 19 24 24 C 1.53008 * 109.46804 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.46950 * 299.99195 * 22 21 19 26 26 C 1.47067 * 87.88528 * 27.11900 * 18 17 16 27 27 H 1.09000 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47454 * 299.99991 * 1 2 3 29 29 H 1.08995 * 109.47239 * 60.00362 * 1 2 3 30 30 H 1.08998 * 109.47454 * 240.00009 * 2 1 3 31 31 H 1.09008 * 109.47000 * 119.99842 * 2 1 3 32 32 H 1.08994 * 109.47416 * 30.00367 * 4 3 2 33 33 H 1.09004 * 109.46932 * 149.99739 * 4 3 2 34 34 H 0.97002 * 120.00411 * 180.02562 * 8 7 5 35 35 H 1.09006 * 113.28053 * 343.07001 * 16 15 13 36 36 H 1.09005 * 113.46950 * 105.37164 * 17 16 15 37 37 H 1.08994 * 113.52293 * 334.93648 * 17 16 15 38 38 H 1.09001 * 109.47173 * 59.99941 * 23 22 21 39 39 H 1.09006 * 109.46940 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.46778 * 299.99641 * 23 22 21 41 41 H 1.08998 * 109.47593 * 59.99624 * 24 22 21 42 42 H 1.09000 * 109.46397 * 179.97438 * 24 22 21 43 43 H 1.08996 * 109.46866 * 299.99118 * 24 22 21 44 44 H 1.09002 * 109.47068 * 59.99877 * 25 22 21 45 45 H 1.08992 * 109.47463 * 180.02562 * 25 22 21 46 46 H 1.09005 * 109.47649 * 300.00807 * 25 22 21 47 47 H 1.09007 * 113.46858 * 87.65629 * 26 18 17 48 48 H 1.08993 * 113.47208 * 218.09965 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1493 2.3905 -2.8773 8 7 3.3496 3.1273 -3.6170 9 14 5.9134 2.0965 -3.4169 10 1 6.6008 1.2406 -2.4168 11 1 5.9205 1.4184 -4.7380 12 1 6.6215 3.3974 -3.5244 13 6 2.2428 2.0166 1.1673 14 8 2.6483 3.1621 1.1672 15 8 2.0180 1.3821 2.3332 16 6 2.2821 2.1275 3.5510 17 6 2.7168 1.2583 4.7391 18 7 1.8769 2.1055 5.5993 19 6 1.8709 2.4657 6.8980 20 8 2.7291 2.0459 7.6489 21 8 0.9134 3.2897 7.3637 22 6 0.9696 3.6356 8.7728 23 6 2.2963 4.3355 9.0737 24 6 -0.1902 4.5734 9.1142 25 6 0.8618 2.3629 9.6150 26 6 1.0426 2.3815 4.4201 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5817 1.6877 -2.0283 33 1 2.0954 3.1410 -1.1384 34 1 3.6756 3.5178 -4.4429 35 1 2.9036 3.0085 3.3906 36 1 3.7809 1.3314 4.9641 37 1 2.3698 0.2272 4.6738 38 1 2.3731 5.2423 8.4736 39 1 2.3386 4.5948 10.1316 40 1 3.1228 3.6677 8.8304 41 1 -1.1357 4.0752 8.8998 42 1 -0.1483 4.8327 10.1721 43 1 -0.1130 5.4801 8.5142 44 1 1.6881 1.6951 9.3716 45 1 0.9034 2.6225 10.6728 46 1 -0.0835 1.8641 9.4006 47 1 0.2491 1.6496 4.2688 48 1 0.6831 3.4093 4.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914061594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:11 Heat of formation + Delta-G solvation = -134.527202 kcal Electronic energy + Delta-G solvation = -28673.468816 eV Core-core repulsion = 24537.066066 eV Total energy + Delta-G solvation = -4136.402750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19799 -41.48892 -40.23119 -37.96842 -37.35664 -36.70906 -35.08333 -34.81993 -31.64048 -30.68932 -29.05762 -28.38169 -28.31757 -27.29442 -25.52239 -24.49114 -23.77237 -22.05930 -21.41943 -20.38234 -19.11873 -18.93126 -18.58191 -18.07851 -17.85013 -17.32232 -17.15283 -16.65690 -16.28847 -15.91309 -15.43115 -15.29465 -14.99519 -14.77268 -14.66830 -14.45504 -14.30397 -13.86823 -13.65580 -13.37941 -13.36495 -13.24777 -13.07703 -13.01393 -12.94078 -12.89957 -12.80256 -12.68408 -12.50753 -12.44664 -12.33843 -12.16603 -11.94920 -11.70292 -11.46094 -11.44618 -11.29371 -11.19867 -10.63096 -10.07732 -9.58564 -8.22019 -6.35784 0.60761 1.32264 1.39440 1.41927 1.53524 1.64903 1.87350 2.39829 2.60844 3.00360 3.09199 3.12435 3.60945 3.72493 3.77476 3.91981 3.96664 4.03245 4.21599 4.34457 4.40701 4.44799 4.48692 4.50384 4.58276 4.60566 4.68790 4.75057 4.77595 4.84110 4.86126 4.95901 5.00253 5.07025 5.11027 5.19328 5.26274 5.30116 5.39496 5.40472 5.42855 5.56481 5.79573 6.04246 6.40267 6.61097 6.72874 7.08559 7.28840 7.46392 8.85490 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.002314 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.564546 B =12096.413180 C =12589.699237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.105 3.895 3 N -0.580 5.580 4 C 0.275 3.725 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.642 3.358 14 O -0.611 6.611 15 O -0.338 6.338 16 C 0.059 3.941 17 C 0.140 3.860 18 N -0.636 5.636 19 C 0.685 3.315 20 O -0.585 6.585 21 O -0.366 6.366 22 C 0.122 3.878 23 C -0.181 4.181 24 C -0.135 4.135 25 C -0.178 4.178 26 C 0.103 3.897 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.121 0.879 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.166 -4.408 23.446 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.017 4.017 3 N -0.318 5.318 4 C 0.156 3.844 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.395 3.605 14 O -0.503 6.503 15 O -0.250 6.250 16 C 0.002 3.998 17 C 0.019 3.981 18 N -0.380 5.380 19 C 0.443 3.557 20 O -0.476 6.476 21 O -0.280 6.280 22 C 0.086 3.914 23 C -0.238 4.238 24 C -0.192 4.192 25 C -0.235 4.235 26 C -0.019 4.019 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.055 0.945 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.139 0.861 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.842 -4.000 23.873 25.770 hybrid contribution 1.046 0.342 -0.681 1.294 sum -7.796 -3.658 23.192 24.739 Atomic orbital electron populations 1.22101 0.94370 1.03453 1.01616 1.21730 0.95499 0.80546 1.03904 1.47273 1.65810 1.15582 1.03092 1.18863 0.95735 0.91665 0.78172 1.21728 0.97793 1.32107 1.06654 0.92767 1.25790 1.02216 0.94447 0.96383 1.70038 1.37612 1.34041 1.14844 0.85389 0.79183 0.77959 0.78405 1.19216 1.19449 1.20858 1.18162 0.77344 0.83076 0.81887 1.90934 1.52980 1.19378 1.87012 1.86249 1.81446 1.44340 1.12968 1.24381 0.99249 0.96467 0.79741 1.23231 0.97399 0.96231 0.81251 1.47542 1.34072 1.51474 1.04913 1.17141 0.80395 0.77895 0.80316 1.90906 1.41089 1.60291 1.55281 1.86338 1.49255 1.61156 1.31289 1.22531 0.98187 0.96210 0.74490 1.22494 0.96792 1.00615 1.03927 1.21893 0.95659 0.98061 1.03617 1.22465 1.02867 0.96984 1.01202 1.23547 0.94972 1.04505 0.78907 0.88750 0.92523 0.93810 0.90264 0.88775 0.94482 0.97600 0.92314 0.87217 0.88634 0.85703 0.92274 0.88624 0.92080 0.91074 0.87559 0.91518 0.92028 0.88713 0.91769 0.86085 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.24 71.98 0.74 -3.15 16 2 C 0.10 3.22 6.13 86.38 0.53 3.75 16 3 N -0.58 -24.30 2.46 -956.54 -2.35 -26.65 16 4 C 0.28 14.33 5.16 85.63 0.44 14.78 16 5 C -0.54 -30.53 9.39 25.60 0.24 -30.29 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.62 5.46 84.65 0.46 1.08 16 8 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 9 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 C 0.64 26.75 8.39 129.79 1.09 27.84 16 14 O -0.61 -30.72 15.13 19.79 0.30 -30.42 16 15 O -0.34 -10.40 9.11 -55.41 -0.50 -10.91 16 16 C 0.06 1.55 4.62 30.93 0.14 1.69 16 17 C 0.14 2.95 8.47 83.18 0.70 3.66 16 18 N -0.64 -15.08 3.69 -989.42 -3.65 -18.73 16 19 C 0.69 18.28 8.26 129.79 1.07 19.35 16 20 O -0.58 -17.76 12.66 19.81 0.25 -17.51 16 21 O -0.37 -8.67 9.91 -55.40 -0.55 -9.21 16 22 C 0.12 2.18 1.13 -10.79 -0.01 2.17 16 23 C -0.18 -3.28 8.37 71.98 0.60 -2.67 16 24 C -0.14 -1.57 8.85 71.98 0.64 -0.93 16 25 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 26 C 0.10 2.18 8.51 83.18 0.71 2.88 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 31 H 0.09 2.45 7.38 -2.38 -0.02 2.44 16 32 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 33 H 0.01 0.35 7.42 -2.39 -0.02 0.33 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.11 3.41 7.06 -2.38 -0.02 3.40 16 36 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 1.46 5.88 -2.38 -0.01 1.45 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.59 398.33 4.70 -68.89 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.94 Total: 14.83 kcal Atomic # 6 Polarization: 29.85 SS G_CDS: 7.96 Total: 37.80 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -5.71 Total: -99.58 kcal Atomic # 8 Polarization: -67.54 SS G_CDS: -0.50 Total: -68.05 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.59 4.70 -68.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914061594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.639 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds