Wall clock time and date at job start Tue Mar 31 2020 15:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47380 * 120.00080 * 2 1 3 5 5 H 1.07994 * 120.00467 * 114.48798 * 4 2 1 6 6 C 1.37882 * 120.00039 * 294.49232 * 4 2 1 7 7 N 1.31506 * 120.00289 * 164.52304 * 6 4 2 8 8 Si 1.86807 * 119.99611 * 344.79715 * 6 4 2 9 9 H 1.48500 * 109.47135 * 269.72638 * 8 6 4 10 10 H 1.48504 * 109.46999 * 29.72649 * 8 6 4 11 11 H 1.48497 * 109.47009 * 149.72539 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99658 * 12 2 1 14 14 C 1.34777 * 119.99874 * 119.99814 * 12 2 1 15 15 O 1.21508 * 119.99967 * 359.97438 * 14 12 2 16 16 O 1.34637 * 119.99908 * 179.97438 * 14 12 2 17 17 C 1.45199 * 116.99842 * 179.97438 * 16 14 12 18 18 C 1.53937 * 113.74264 * 248.73715 * 17 16 14 19 19 N 1.47807 * 86.03976 * 222.08675 * 18 17 16 20 20 C 1.34783 * 134.45936 * 204.64771 * 19 18 17 21 21 O 1.21508 * 120.00104 * 179.86629 * 20 19 18 22 22 O 1.34638 * 119.99641 * 359.86696 * 20 19 18 23 23 C 1.45201 * 116.99735 * 180.02562 * 22 20 19 24 24 C 1.53005 * 109.47184 * 59.99759 * 23 22 20 25 25 C 1.53004 * 109.46923 * 179.97438 * 23 22 20 26 26 C 1.53004 * 109.46986 * 299.99782 * 23 22 20 27 27 C 1.47574 * 91.05092 * 24.54991 * 19 18 17 28 28 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 29 29 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 30 30 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 31 31 H 0.97005 * 120.00073 * 355.18266 * 7 6 4 32 32 H 1.09005 * 109.47467 * 89.99947 * 13 12 2 33 33 H 1.08995 * 109.47707 * 210.00376 * 13 12 2 34 34 H 1.09011 * 109.46948 * 330.00192 * 13 12 2 35 35 H 1.09003 * 112.94717 * 20.33554 * 17 16 14 36 36 H 1.09002 * 113.77065 * 336.35163 * 18 17 16 37 37 H 1.09004 * 113.77220 * 107.74750 * 18 17 16 38 38 H 1.08994 * 109.47269 * 59.99938 * 24 23 22 39 39 H 1.08997 * 109.46668 * 180.02562 * 24 23 22 40 40 H 1.08998 * 109.46694 * 299.99680 * 24 23 22 41 41 H 1.09001 * 109.46748 * 60.00032 * 25 23 22 42 42 H 1.09004 * 109.46877 * 179.97438 * 25 23 22 43 43 H 1.08994 * 109.47128 * 299.99815 * 25 23 22 44 44 H 1.08998 * 109.47158 * 59.99830 * 26 23 22 45 45 H 1.08992 * 109.46814 * 180.02562 * 26 23 22 46 46 H 1.08997 * 109.46726 * 300.00018 * 26 23 22 47 47 H 1.09006 * 113.77295 * 221.15058 * 27 19 18 48 48 H 1.09000 * 113.76871 * 89.75535 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0862 1.1278 -1.8914 16 8 3.2423 -0.6704 -3.1825 17 6 4.0713 0.0971 -4.0945 18 6 3.3954 0.3948 -5.4451 19 7 4.7038 0.0753 -6.0540 20 6 5.3165 0.4127 -7.2061 21 8 6.4293 -0.0104 -7.4490 22 8 4.6954 1.2187 -8.0878 23 6 5.4147 1.5397 -9.3076 24 6 5.7208 0.2509 -10.0734 25 6 4.5562 2.4586 -10.1791 26 6 6.7249 2.2474 -8.9558 27 6 5.0707 -0.7591 -4.8934 28 1 -0.3633 -1.0217 -0.1115 29 1 -0.3633 0.4141 0.9405 30 1 -0.3634 0.6073 -0.8290 31 1 2.1679 -1.8620 3.4633 32 1 0.7375 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 4.5202 0.9729 -3.6259 36 1 2.6056 -0.3098 -5.7060 37 1 3.0955 1.4358 -5.5664 38 1 4.7875 -0.2532 -10.3240 39 1 6.2612 0.4919 -10.9888 40 1 6.3323 -0.4039 -9.4526 41 1 4.3378 3.3767 -9.6337 42 1 5.0964 2.6999 -11.0946 43 1 3.6231 1.9541 -10.4297 44 1 7.3363 1.5924 -8.3351 45 1 7.2646 2.4887 -9.8715 46 1 6.5067 3.1654 -8.4103 47 1 6.1061 -0.6378 -4.5748 48 1 4.7742 -1.8033 -4.9917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914063333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:30 Heat of formation + Delta-G solvation = -112.109762 kcal Electronic energy + Delta-G solvation = -28751.882562 eV Core-core repulsion = 24616.451905 eV Total energy + Delta-G solvation = -4135.430657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.16198 -40.28183 -39.02673 -36.96122 -36.21473 -35.19439 -34.29811 -32.83997 -30.34481 -29.34833 -27.74083 -27.69021 -26.64114 -26.34381 -24.87137 -23.50072 -22.01157 -20.85875 -19.59142 -19.40487 -18.13777 -17.75979 -17.40012 -16.99063 -16.87216 -16.20139 -16.03141 -15.37055 -15.07831 -14.54977 -14.44866 -13.91199 -13.79767 -13.59522 -13.30875 -13.19279 -12.85912 -12.80773 -12.69888 -12.53431 -12.23740 -12.21829 -12.08976 -12.03153 -11.85740 -11.79459 -11.64145 -11.57651 -11.42410 -11.34752 -10.66314 -10.60610 -10.44834 -10.24982 -10.24603 -9.85057 -9.67406 -9.14378 -9.10898 -8.44656 -7.96367 -6.55054 -4.21393 1.57050 2.47707 2.73818 3.29095 3.38327 3.40689 3.43693 3.55993 4.10169 4.27222 4.38596 4.42391 4.43205 4.57004 4.65839 4.87445 4.94969 5.13746 5.14381 5.16384 5.21073 5.21228 5.30724 5.35851 5.42274 5.51452 5.53198 5.55009 5.66991 5.76693 5.93821 5.96670 6.00553 6.18020 6.20383 6.32652 6.34638 6.48926 6.54763 6.84490 7.09992 7.28682 7.31671 7.72995 8.04745 8.14325 8.27208 8.69696 8.89639 9.46846 10.82106 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.002242 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.822685 B =12485.758251 C =12718.665730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.248 3.752 3 H 0.059 0.941 4 C -0.614 4.614 5 H 0.064 0.936 6 C 0.039 3.961 7 N -0.899 5.899 8 Si 1.038 2.962 9 H -0.283 1.283 10 H -0.269 1.269 11 H -0.284 1.284 12 N -0.565 5.565 13 C 0.089 3.911 14 C 0.639 3.361 15 O -0.579 6.579 16 O -0.358 6.358 17 C 0.072 3.928 18 C 0.097 3.903 19 N -0.631 5.631 20 C 0.682 3.318 21 O -0.565 6.565 22 O -0.360 6.360 23 C 0.135 3.865 24 C -0.183 4.183 25 C -0.140 4.140 26 C -0.184 4.184 27 C 0.138 3.862 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.270 0.730 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 2.139 -25.335 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.652 4.652 5 H 0.082 0.918 6 C -0.167 4.167 7 N -0.532 5.532 8 Si 0.865 3.135 9 H -0.209 1.209 10 H -0.195 1.195 11 H -0.210 1.210 12 N -0.303 5.303 13 C -0.054 4.054 14 C 0.392 3.608 15 O -0.469 6.469 16 O -0.271 6.271 17 C 0.014 3.986 18 C -0.026 4.026 19 N -0.375 5.375 20 C 0.439 3.561 21 O -0.455 6.455 22 O -0.275 6.275 23 C 0.098 3.902 24 C -0.240 4.240 25 C -0.198 4.198 26 C -0.241 4.241 27 C 0.017 3.983 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.117 0.883 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.285 3.621 -24.524 25.006 hybrid contribution 0.414 -1.323 -1.199 1.833 sum 3.699 2.298 -25.723 26.089 Atomic orbital electron populations 1.22469 0.98286 1.00392 1.00231 1.19368 0.90450 0.94596 0.80815 0.92283 1.22177 1.40897 1.11381 0.90711 0.91815 1.25683 0.94079 1.05343 0.91615 1.70816 1.43432 1.08297 1.30646 0.84187 0.77573 0.75535 0.76160 1.20906 1.19467 1.20974 1.47054 1.49301 1.12298 1.21601 1.21601 0.99407 0.82010 1.02425 1.18165 0.79349 0.83757 0.79488 1.90929 1.62377 1.16157 1.77451 1.86308 1.64064 1.43849 1.32904 1.24602 0.90977 0.96017 0.87009 1.23776 0.86924 1.03274 0.88636 1.48113 1.20193 1.52188 1.17054 1.17243 0.82231 0.77761 0.78889 1.90909 1.19193 1.58815 1.76540 1.86326 1.48243 1.62897 1.29990 1.22118 0.91960 0.95532 0.80576 1.22517 1.02914 0.97553 1.01062 1.21861 1.00133 0.99121 0.98644 1.22525 0.96951 1.01373 1.03279 1.23370 1.00346 0.96059 0.78568 0.93235 0.91786 0.95307 0.92034 0.93667 0.91942 0.89886 0.85420 0.88326 0.88676 0.92152 0.91056 0.89429 0.91369 0.90064 0.91438 0.89378 0.91073 0.92041 0.88345 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.57 37.16 0.32 -2.91 16 2 C 0.25 5.81 2.19 -69.08 -0.15 5.66 16 3 H 0.06 1.50 5.53 -51.93 -0.29 1.22 16 4 C -0.61 -16.37 8.37 -34.44 -0.29 -16.65 16 5 H 0.06 1.81 7.38 -52.49 -0.39 1.43 16 6 C 0.04 1.08 5.33 -17.82 -0.09 0.99 16 7 N -0.90 -26.46 13.70 55.43 0.76 -25.70 16 8 Si 1.04 24.46 26.17 -169.99 -4.45 20.01 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.27 -5.82 5.53 56.52 0.31 -5.51 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.56 -11.61 2.75 -181.07 -0.50 -12.11 16 13 C 0.09 1.48 9.31 59.85 0.56 2.04 16 14 C 0.64 12.70 8.40 54.06 0.45 13.16 16 15 O -0.58 -13.08 14.90 -19.28 -0.29 -13.37 16 16 O -0.36 -5.55 9.08 -40.32 -0.37 -5.91 16 17 C 0.07 0.91 4.41 -25.81 -0.11 0.80 16 18 C 0.10 1.04 8.73 -2.85 -0.02 1.02 16 19 N -0.63 -7.50 3.61 -184.21 -0.67 -8.16 16 20 C 0.68 8.97 8.22 54.06 0.44 9.42 16 21 O -0.57 -8.35 12.61 -19.28 -0.24 -8.59 16 22 O -0.36 -4.27 9.87 -40.32 -0.40 -4.67 16 23 C 0.13 1.26 1.13 -90.61 -0.10 1.16 16 24 C -0.18 -1.62 8.37 37.16 0.31 -1.31 16 25 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 26 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 27 C 0.14 1.48 8.68 -2.97 -0.03 1.45 16 28 H 0.05 0.96 7.47 -51.93 -0.39 0.57 16 29 H 0.06 1.36 5.06 -51.93 -0.26 1.09 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.92 7.37 -51.93 -0.38 0.53 16 34 H 0.08 1.49 6.92 -51.92 -0.36 1.13 16 35 H 0.13 1.78 7.11 -51.93 -0.37 1.42 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -32.47 384.56 -6.21 -38.68 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.78 Total: 1.18 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 1.92 Total: 12.84 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.40 Total: -45.97 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.29 Total: -32.54 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.45 Total: 20.01 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.47 -6.21 -38.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.427 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds