Wall clock time and date at job start Tue Mar 31 2020 16:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00208 * 2 1 4 4 H 1.48495 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46897 * 299.99684 * 3 2 1 6 6 H 1.48505 * 109.46953 * 59.99180 * 3 2 1 7 7 C 1.38819 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99816 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99984 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.91476 * 37.45192 * 10 9 7 12 12 C 1.55155 * 111.00678 * 273.54783 * 10 9 7 13 13 C 1.54324 * 102.94293 * 206.42380 * 12 10 9 14 14 N 1.47025 * 107.27326 * 22.18927 * 13 12 10 15 15 C 1.34775 * 125.65149 * 181.01380 * 14 13 12 16 16 O 1.21549 * 120.00030 * 174.89132 * 15 14 13 17 17 C 1.47849 * 119.99819 * 354.89327 * 15 14 13 18 18 C 1.39267 * 119.85621 * 312.12740 * 17 15 14 19 19 C 1.37942 * 119.60415 * 180.02562 * 18 17 15 20 20 C 1.38059 * 119.85719 * 359.57277 * 19 18 17 21 21 C 1.39162 * 120.85717 * 359.96479 * 20 19 18 22 22 C 1.36988 * 119.88362 * 0.65118 * 21 20 19 23 23 C 1.50909 * 123.49852 * 177.90540 * 22 21 20 24 24 C 1.52775 * 111.42503 * 30.14441 * 23 22 21 25 25 C 1.53005 * 108.58224 * 268.57977 * 24 23 22 26 26 C 1.52594 * 109.62977 * 60.85587 * 25 24 23 27 27 C 1.50594 * 117.34021 * 181.99616 * 21 20 19 28 28 C 1.47432 * 108.69958 * 1.05989 * 14 13 12 29 29 H 0.96995 * 120.00000 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00109 * 359.97438 * 9 7 2 31 31 H 1.08994 * 110.72179 * 88.06183 * 12 10 9 32 32 H 1.09001 * 110.86858 * 324.85455 * 12 10 9 33 33 H 1.08997 * 109.88283 * 141.60524 * 13 12 10 34 34 H 1.09003 * 109.88197 * 262.77781 * 13 12 10 35 35 H 1.07997 * 120.19506 * 0.03889 * 18 17 15 36 36 H 1.07995 * 120.07429 * 179.58841 * 19 18 17 37 37 H 1.08006 * 119.57454 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.09028 * 150.64273 * 23 22 21 39 39 H 1.08997 * 109.09441 * 269.64008 * 23 22 21 40 40 H 1.08999 * 109.61746 * 28.30686 * 24 23 22 41 41 H 1.09004 * 109.62090 * 148.85462 * 24 23 22 42 42 H 1.09000 * 109.44780 * 180.90734 * 25 24 23 43 43 H 1.08997 * 109.44413 * 300.81371 * 25 24 23 44 44 H 1.08997 * 109.77646 * 152.62674 * 26 25 24 45 45 H 1.08997 * 109.77746 * 273.38378 * 26 25 24 46 46 H 1.08998 * 109.19873 * 350.35653 * 27 21 20 47 47 H 1.09001 * 109.19923 * 109.63276 * 27 21 20 48 48 H 1.09002 * 110.36735 * 217.02788 * 28 14 13 49 49 H 1.09003 * 110.36096 * 94.71091 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8913 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9527 -3.5896 0.6197 12 6 2.4138 -4.0937 -1.4451 13 6 2.5173 -5.6289 -1.3267 14 7 1.7448 -6.0284 -0.1413 15 6 1.6037 -7.2881 0.3166 16 8 1.0172 -7.4930 1.3613 17 6 2.1625 -8.4208 -0.4520 18 6 1.9275 -8.5124 -1.8216 19 6 2.4509 -9.5717 -2.5335 20 6 3.2096 -10.5267 -1.8865 21 6 3.4566 -10.4365 -0.5200 22 6 2.9323 -9.3965 0.2012 23 6 3.1099 -9.2437 1.6920 24 6 4.4325 -9.8476 2.1613 25 6 4.1903 -11.3065 2.5538 26 6 3.6862 -12.0862 1.3429 27 6 4.3319 -11.4958 0.0960 28 6 1.1491 -4.8228 0.4631 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.3674 -3.6656 -1.7537 32 1 1.6233 -3.8130 -2.1412 33 1 2.0992 -6.0984 -2.2171 34 1 3.5602 -5.9219 -1.2054 35 1 1.3392 -7.7585 -2.3234 36 1 2.2678 -9.6538 -3.5946 37 1 3.6168 -11.3544 -2.4482 38 1 3.0918 -8.1839 1.9465 39 1 2.2879 -9.7457 2.2023 40 1 5.1625 -9.8024 1.3532 41 1 4.8024 -9.2931 3.0238 42 1 5.1229 -11.7470 2.9065 43 1 3.4457 -11.3496 3.3486 44 1 3.9632 -13.1360 1.4389 45 1 2.6024 -11.9958 1.2710 46 1 4.5032 -12.2878 -0.6330 47 1 5.2884 -11.0532 0.3744 48 1 1.1556 -4.9006 1.5503 49 1 0.1321 -4.6786 0.0983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969013158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:03 Heat of formation + Delta-G solvation = -1.913266 kcal Electronic energy + Delta-G solvation = -28182.912418 eV Core-core repulsion = 24495.402254 eV Total energy + Delta-G solvation = -3687.510164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.87017 -39.31361 -37.27432 -36.89135 -34.16366 -33.05003 -31.72692 -31.32220 -30.00685 -29.51522 -27.69237 -25.78433 -24.85683 -24.35611 -23.25761 -22.22574 -20.70742 -20.12609 -19.93859 -19.20197 -17.37805 -17.05837 -16.63956 -16.02954 -15.73084 -15.63547 -15.35720 -14.64137 -14.29975 -14.13211 -13.94799 -13.66466 -13.48773 -13.38882 -13.21357 -12.81392 -12.74992 -12.60026 -12.50147 -12.29158 -12.02410 -11.87093 -11.57383 -11.29973 -11.16506 -10.98933 -10.88417 -10.85226 -10.80821 -10.71177 -10.50402 -10.30409 -10.05298 -9.81219 -9.69871 -8.98935 -8.93357 -8.74689 -8.40192 -7.06812 -5.84336 -3.14939 0.86293 1.18751 2.77827 3.10177 3.39443 3.45417 3.47538 3.60000 4.38743 4.41863 4.52926 4.53162 4.62948 4.67424 4.81426 4.86492 4.95050 5.04845 5.04968 5.23845 5.24646 5.28427 5.34635 5.43378 5.47284 5.52938 5.58197 5.61124 5.62882 5.68745 5.73368 5.78256 5.93551 5.96314 5.97772 6.00877 6.03523 6.13204 6.18073 6.20030 6.24668 6.27797 6.35849 6.44957 6.54697 6.59678 6.75186 6.89396 7.64227 7.68214 8.25319 8.33165 9.44804 9.98618 10.33634 11.37972 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.002556 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.510473 B =10953.075288 C =11445.406772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.100 3.900 14 N -0.607 5.607 15 C 0.571 3.429 16 O -0.536 6.536 17 C -0.122 4.122 18 C -0.088 4.088 19 C -0.128 4.128 20 C -0.102 4.102 21 C -0.084 4.084 22 C -0.024 4.024 23 C -0.082 4.082 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.083 4.083 28 C 0.099 3.901 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.257 -25.356 -3.010 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.023 4.023 14 N -0.340 5.340 15 C 0.360 3.640 16 O -0.414 6.414 17 C -0.125 4.125 18 C -0.107 4.107 19 C -0.146 4.146 20 C -0.120 4.120 21 C -0.084 4.084 22 C -0.025 4.025 23 C -0.119 4.119 24 C -0.164 4.164 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.120 4.120 28 C -0.024 4.024 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.096 0.904 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.043 -25.351 -2.400 27.022 hybrid contribution 0.004 1.027 -0.350 1.085 sum 9.047 -24.324 -2.750 26.097 Atomic orbital electron populations 1.69672 1.05155 1.25785 1.57154 1.24777 0.95536 0.97825 1.02567 0.86098 0.78790 0.83927 0.77231 1.20478 1.21799 1.21780 1.19249 0.91075 0.83743 1.43330 0.90927 1.42261 1.05824 0.99327 1.88134 1.21283 0.94182 0.85614 0.92875 0.91899 1.23423 1.02879 0.91256 1.02037 1.22216 0.95339 0.97359 0.87409 1.48376 1.50585 1.05910 1.29126 1.17940 0.79871 0.81583 0.84611 1.90781 1.43348 1.84290 1.23026 1.20016 1.01763 0.96651 0.94076 1.21267 0.98662 0.98234 0.92521 1.20986 0.98808 0.94800 1.00048 1.21400 0.98009 0.98772 0.93821 1.19448 0.99557 0.95853 0.93546 1.19631 0.94801 0.92226 0.95855 1.20655 0.98040 1.02554 0.90625 1.21778 0.97559 0.95687 1.01329 1.21648 1.01119 0.95369 0.97803 1.21418 1.01035 0.98982 0.94111 1.20580 0.98270 0.95905 0.97239 1.22560 0.97521 0.83411 0.98899 0.93394 0.77934 0.90708 0.90499 0.91846 0.91871 0.85321 0.85530 0.85925 0.90483 0.89780 0.90900 0.91493 0.92076 0.91782 0.91569 0.91534 0.91300 0.89954 0.90392 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.29 5.28 -51.35 -0.27 -17.56 16 10 C 0.17 3.32 3.68 -65.79 -0.24 3.07 16 11 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 12 C -0.15 -2.51 6.65 -24.90 -0.17 -2.68 16 13 C 0.10 1.37 5.98 -3.06 -0.02 1.35 16 14 N -0.61 -9.61 3.33 -171.62 -0.57 -10.18 16 15 C 0.57 9.31 6.33 -12.33 -0.08 9.23 16 16 O -0.54 -10.29 15.49 5.32 0.08 -10.21 16 17 C -0.12 -1.65 5.34 -104.77 -0.56 -2.21 16 18 C -0.09 -1.01 8.40 -39.31 -0.33 -1.34 16 19 C -0.13 -1.20 10.04 -39.76 -0.40 -1.60 16 20 C -0.10 -0.91 9.56 -39.30 -0.38 -1.29 16 21 C -0.08 -0.83 5.13 -104.78 -0.54 -1.37 16 22 C -0.02 -0.30 5.54 -104.16 -0.58 -0.87 16 23 C -0.08 -0.99 4.16 -27.90 -0.12 -1.10 16 24 C -0.13 -1.16 5.61 -26.84 -0.15 -1.31 16 25 C -0.12 -0.94 5.64 -26.94 -0.15 -1.09 16 26 C -0.12 -0.88 5.72 -27.29 -0.16 -1.04 16 27 C -0.08 -0.63 5.17 -28.28 -0.15 -0.77 16 28 C 0.10 1.76 6.55 -2.53 -0.02 1.75 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.39 9.97 7.71 -40.82 -0.31 9.66 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.75 5.92 -51.93 -0.31 0.45 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.13 1.38 6.47 -52.49 -0.34 1.04 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.79 7.80 -52.48 -0.41 0.38 16 38 H 0.08 1.10 6.28 -51.93 -0.33 0.77 16 39 H 0.08 1.07 7.70 -51.93 -0.40 0.67 16 40 H 0.07 0.64 5.41 -51.93 -0.28 0.36 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.59 7.80 -51.93 -0.40 0.18 16 46 H 0.07 0.42 7.70 -51.93 -0.40 0.02 16 47 H 0.08 0.60 5.75 -51.93 -0.30 0.30 16 48 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 49 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -30.93 376.77 -11.30 -42.24 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.66 Total: 8.30 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -4.27 Total: -8.33 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.12 Total: -54.54 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.93 -11.30 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969013158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.323 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds