Wall clock time and date at job start Tue Mar 31 2020 16:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00208 * 2 1 4 4 H 1.48495 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46897 * 299.99684 * 3 2 1 6 6 H 1.48505 * 109.46953 * 59.99180 * 3 2 1 7 7 C 1.38819 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99816 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99984 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.91476 * 37.45192 * 10 9 7 12 12 C 1.55155 * 111.00678 * 273.54783 * 10 9 7 13 13 C 1.54324 * 102.94293 * 206.42380 * 12 10 9 14 14 N 1.47025 * 107.27326 * 22.18927 * 13 12 10 15 15 C 1.34775 * 125.65149 * 181.01380 * 14 13 12 16 16 O 1.21549 * 120.00030 * 174.89132 * 15 14 13 17 17 C 1.47849 * 119.99819 * 354.89327 * 15 14 13 18 18 C 1.39267 * 119.85621 * 312.12740 * 17 15 14 19 19 C 1.37942 * 119.60415 * 180.02562 * 18 17 15 20 20 C 1.38059 * 119.85719 * 359.57277 * 19 18 17 21 21 C 1.39162 * 120.85717 * 359.96479 * 20 19 18 22 22 C 1.36988 * 119.88362 * 0.65118 * 21 20 19 23 23 C 1.50909 * 123.49852 * 177.90540 * 22 21 20 24 24 C 1.52775 * 111.42503 * 30.14441 * 23 22 21 25 25 C 1.53005 * 108.58224 * 268.57977 * 24 23 22 26 26 C 1.52594 * 109.62977 * 60.85587 * 25 24 23 27 27 C 1.50594 * 117.34021 * 181.99616 * 21 20 19 28 28 C 1.47432 * 108.69958 * 1.05989 * 14 13 12 29 29 H 0.96995 * 120.00000 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00109 * 359.97438 * 9 7 2 31 31 H 1.08994 * 110.72179 * 88.06183 * 12 10 9 32 32 H 1.09001 * 110.86858 * 324.85455 * 12 10 9 33 33 H 1.08997 * 109.88283 * 141.60524 * 13 12 10 34 34 H 1.09003 * 109.88197 * 262.77781 * 13 12 10 35 35 H 1.07997 * 120.19506 * 0.03889 * 18 17 15 36 36 H 1.07995 * 120.07429 * 179.58841 * 19 18 17 37 37 H 1.08006 * 119.57454 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.09028 * 150.64273 * 23 22 21 39 39 H 1.08997 * 109.09441 * 269.64008 * 23 22 21 40 40 H 1.08999 * 109.61746 * 28.30686 * 24 23 22 41 41 H 1.09004 * 109.62090 * 148.85462 * 24 23 22 42 42 H 1.09000 * 109.44780 * 180.90734 * 25 24 23 43 43 H 1.08997 * 109.44413 * 300.81371 * 25 24 23 44 44 H 1.08997 * 109.77646 * 152.62674 * 26 25 24 45 45 H 1.08997 * 109.77746 * 273.38378 * 26 25 24 46 46 H 1.08998 * 109.19873 * 350.35653 * 27 21 20 47 47 H 1.09001 * 109.19923 * 109.63276 * 27 21 20 48 48 H 1.09002 * 110.36735 * 217.02788 * 28 14 13 49 49 H 1.09003 * 110.36096 * 94.71091 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8913 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9527 -3.5896 0.6197 12 6 2.4138 -4.0937 -1.4451 13 6 2.5173 -5.6289 -1.3267 14 7 1.7448 -6.0284 -0.1413 15 6 1.6037 -7.2881 0.3166 16 8 1.0172 -7.4930 1.3613 17 6 2.1625 -8.4208 -0.4520 18 6 1.9275 -8.5124 -1.8216 19 6 2.4509 -9.5717 -2.5335 20 6 3.2096 -10.5267 -1.8865 21 6 3.4566 -10.4365 -0.5200 22 6 2.9323 -9.3965 0.2012 23 6 3.1099 -9.2437 1.6920 24 6 4.4325 -9.8476 2.1613 25 6 4.1903 -11.3065 2.5538 26 6 3.6862 -12.0862 1.3429 27 6 4.3319 -11.4958 0.0960 28 6 1.1491 -4.8228 0.4631 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 3.3674 -3.6656 -1.7537 32 1 1.6233 -3.8130 -2.1412 33 1 2.0992 -6.0984 -2.2171 34 1 3.5602 -5.9219 -1.2054 35 1 1.3392 -7.7585 -2.3234 36 1 2.2678 -9.6538 -3.5946 37 1 3.6168 -11.3544 -2.4482 38 1 3.0918 -8.1839 1.9465 39 1 2.2879 -9.7457 2.2023 40 1 5.1625 -9.8024 1.3532 41 1 4.8024 -9.2931 3.0238 42 1 5.1229 -11.7470 2.9065 43 1 3.4457 -11.3496 3.3486 44 1 3.9632 -13.1360 1.4389 45 1 2.6024 -11.9958 1.2710 46 1 4.5032 -12.2878 -0.6330 47 1 5.2884 -11.0532 0.3744 48 1 1.1556 -4.9006 1.5503 49 1 0.1321 -4.6786 0.0983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969013158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:02 Heat of formation + Delta-G solvation = -18.677133 kcal Electronic energy + Delta-G solvation = -28183.639353 eV Core-core repulsion = 24495.402254 eV Total energy + Delta-G solvation = -3688.237100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86376 -40.42607 -38.67473 -37.65887 -35.96587 -33.94007 -33.31896 -32.20567 -31.23502 -30.72429 -29.20040 -26.50612 -26.05425 -25.43991 -24.85869 -23.34419 -21.69852 -21.47910 -20.70898 -20.28514 -19.31064 -18.26129 -17.72646 -17.00031 -16.84582 -16.75574 -16.28266 -16.17589 -15.56233 -15.33356 -15.04250 -14.83014 -14.72282 -14.51289 -14.23870 -14.18928 -13.84486 -13.71164 -13.33574 -13.23618 -13.13377 -13.06449 -13.02778 -12.80906 -12.65716 -12.36655 -12.10483 -12.04121 -11.77913 -11.66921 -11.59953 -11.57941 -11.52646 -11.20553 -10.97470 -10.96160 -9.87303 -9.64884 -9.53920 -9.07385 -7.96700 -5.27246 -0.01722 0.39816 1.48339 1.49285 1.58523 1.59616 1.86006 2.55718 2.74405 3.30905 3.42405 3.65204 3.67870 3.70385 3.86841 3.91796 3.97463 4.02786 4.10474 4.18936 4.21647 4.26687 4.30285 4.36357 4.46486 4.50615 4.54826 4.64344 4.69875 4.76186 4.79166 4.85594 4.92055 4.93527 5.02723 5.06354 5.11234 5.17808 5.19279 5.28178 5.35729 5.37051 5.38284 5.42128 5.47893 5.52318 5.55277 5.67149 5.98969 6.23894 6.41416 6.97470 7.30777 8.00958 8.25913 9.26860 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.002556 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.510473 B =10953.075288 C =11445.406772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.059 0.941 12 C -0.142 4.142 13 C 0.108 3.892 14 N -0.607 5.607 15 C 0.569 3.431 16 O -0.578 6.578 17 C -0.147 4.147 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.041 4.041 23 C -0.076 4.076 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.082 4.082 28 C 0.108 3.892 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.060 0.940 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.963 -27.967 -5.252 30.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.370 4.370 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.077 0.923 12 C -0.183 4.183 13 C -0.014 4.014 14 N -0.340 5.340 15 C 0.360 3.640 16 O -0.459 6.459 17 C -0.150 4.150 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.085 4.085 22 C -0.042 4.042 23 C -0.113 4.113 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.119 4.119 28 C -0.016 4.016 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.805 -28.004 -4.665 30.746 hybrid contribution -0.828 1.715 0.360 1.938 sum 10.977 -26.289 -4.305 28.812 Atomic orbital electron populations 1.69829 1.06712 1.26105 1.59340 1.25588 0.96351 1.01177 1.03538 0.85062 0.78364 0.79713 0.76533 1.18751 1.21985 1.22391 1.19625 0.91557 0.84655 1.41189 0.90136 1.42398 1.05440 1.00474 1.88486 1.21402 0.93654 0.84164 0.95045 0.92319 1.23212 1.02968 0.93109 0.98978 1.22279 0.96272 0.95373 0.87436 1.48415 1.50645 1.05290 1.29610 1.18537 0.79054 0.82164 0.84250 1.90746 1.45207 1.84890 1.25039 1.19899 1.03819 0.96321 0.94986 1.21382 0.98970 0.99391 0.91560 1.21350 0.97643 0.93663 1.01407 1.21845 0.96680 0.99206 0.93381 1.19766 0.99124 0.95390 0.94201 1.19732 0.95722 0.93137 0.95630 1.20536 0.99079 1.00380 0.91327 1.21767 0.95983 0.96666 1.01447 1.21636 1.01857 0.94289 0.97943 1.21413 0.99853 1.00131 0.93980 1.20651 0.97776 0.95832 0.97634 1.22256 0.97075 0.84248 0.97999 0.93978 0.79323 0.89617 0.91385 0.89201 0.90102 0.84984 0.82493 0.82440 0.93830 0.91659 0.89964 0.91740 0.90130 0.92646 0.89467 0.93434 0.88761 0.89275 0.92125 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 3 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.24 -12.90 9.98 84.04 0.84 -12.06 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.73 -36.15 5.28 -316.38 -1.67 -37.82 16 10 C 0.17 6.56 3.68 46.38 0.17 6.73 16 11 H 0.06 2.35 8.13 -2.38 -0.02 2.33 16 12 C -0.14 -4.49 6.65 31.78 0.21 -4.27 16 13 C 0.11 2.81 5.98 86.73 0.52 3.33 16 14 N -0.61 -19.59 3.33 -815.17 -2.71 -22.30 16 15 C 0.57 19.27 6.33 86.79 0.55 19.82 16 16 O -0.58 -23.79 15.49 -3.87 -0.06 -23.85 16 17 C -0.15 -3.94 5.34 -19.96 -0.11 -4.04 16 18 C -0.09 -1.96 8.40 22.45 0.19 -1.77 16 19 C -0.12 -1.82 10.04 22.16 0.22 -1.60 16 20 C -0.09 -1.26 9.56 22.45 0.21 -1.05 16 21 C -0.08 -1.45 5.13 -19.97 -0.10 -1.56 16 22 C -0.04 -0.99 5.54 -19.57 -0.11 -1.10 16 23 C -0.08 -1.92 4.16 29.84 0.12 -1.80 16 24 C -0.12 -2.18 5.61 30.52 0.17 -2.01 16 25 C -0.12 -1.68 5.64 30.46 0.17 -1.50 16 26 C -0.12 -1.47 5.72 30.23 0.17 -1.29 16 27 C -0.08 -0.95 5.17 29.59 0.15 -0.80 16 28 C 0.11 4.04 6.55 86.85 0.57 4.61 16 29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.37 20.15 7.71 -92.71 -0.71 19.44 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 1.91 5.92 -2.39 -0.01 1.90 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.13 2.55 6.47 -2.91 -0.02 2.54 16 36 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.16 1.07 7.80 -2.91 -0.02 1.05 16 38 H 0.04 1.36 6.28 -2.38 -0.01 1.34 16 39 H 0.07 1.82 7.70 -2.39 -0.02 1.81 16 40 H 0.08 1.32 5.41 -2.39 -0.01 1.30 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 0.87 8.05 -2.39 -0.02 0.85 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.05 0.79 7.80 -2.39 -0.02 0.77 16 46 H 0.09 0.65 7.70 -2.39 -0.02 0.63 16 47 H 0.09 0.96 5.75 -2.39 -0.01 0.94 16 48 H 0.06 2.44 7.99 -2.39 -0.02 2.42 16 49 H 0.06 2.39 8.00 -2.39 -0.02 2.37 16 Total: -1.00 -70.14 376.77 2.54 -67.60 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.24 Total: 31.64 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 4.43 Total: -4.09 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -4.10 Total: -118.76 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -70.14 2.54 -67.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969013158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.925 kcal (2) G-P(sol) polarization free energy of solvation -70.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds