Wall clock time and date at job start Tue Mar 31 2020 16:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99845 * 179.72546 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.64000 * 36.68447 * 10 9 7 12 12 C 1.55160 * 110.71990 * 273.54634 * 10 9 7 13 13 C 1.54904 * 101.58416 * 206.13427 * 12 10 9 14 14 N 1.47434 * 104.83221 * 37.00719 * 13 12 10 15 15 C 1.34774 * 125.64804 * 155.91720 * 14 13 12 16 16 O 1.21277 * 119.99910 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.99872 * 359.97438 * 15 14 13 18 18 C 1.50707 * 109.46941 * 179.97438 * 17 15 14 19 19 C 1.38266 * 120.11561 * 269.72702 * 18 17 15 20 20 C 1.37928 * 119.77393 * 179.82872 * 19 18 17 21 21 C 1.38918 * 120.54118 * 0.57408 * 20 19 18 22 22 C 1.37660 * 119.68115 * 359.54194 * 21 20 19 23 23 C 1.37930 * 120.11357 * 89.99702 * 18 17 15 24 24 C 1.50639 * 122.56260 * 180.44682 * 22 21 20 25 25 C 1.52730 * 110.58690 * 342.28370 * 24 22 21 26 26 C 1.53325 * 108.38306 * 51.09804 * 25 24 22 27 27 C 1.50635 * 117.75082 * 179.36933 * 21 20 19 28 28 C 1.47023 * 108.70268 * 335.87220 * 14 13 12 29 29 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09008 * 110.99918 * 324.20876 * 12 10 9 32 32 H 1.08994 * 111.00219 * 88.01702 * 12 10 9 33 33 H 1.08995 * 110.37093 * 155.84550 * 13 12 10 34 34 H 1.09000 * 110.36548 * 278.05866 * 13 12 10 35 35 H 1.08999 * 109.47537 * 299.99471 * 17 15 14 36 36 H 1.09002 * 109.47602 * 60.00226 * 17 15 14 37 37 H 1.08003 * 120.11355 * 0.07889 * 19 18 17 38 38 H 1.08000 * 119.73209 * 180.30161 * 20 19 18 39 39 H 1.08003 * 119.72752 * 359.91667 * 23 18 17 40 40 H 1.09000 * 109.25354 * 102.57311 * 24 22 21 41 41 H 1.08995 * 109.24937 * 222.04041 * 24 22 21 42 42 H 1.08998 * 109.67922 * 170.81614 * 25 24 22 43 43 H 1.09000 * 109.68807 * 291.33817 * 25 24 22 44 44 H 1.09000 * 109.68169 * 49.83332 * 26 25 24 45 45 H 1.09006 * 109.68358 * 170.35265 * 26 25 24 46 46 H 1.08996 * 109.24956 * 42.18095 * 27 21 20 47 47 H 1.09000 * 109.25553 * 282.75303 * 27 21 20 48 48 H 1.08998 * 109.88202 * 241.64198 * 28 14 13 49 49 H 1.09004 * 109.88287 * 120.47603 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 -0.0051 10 6 4.1121 -2.4708 -0.0051 11 1 3.5933 -3.2141 -0.6106 12 6 4.3149 -2.9877 1.4437 13 6 5.5944 -3.8473 1.2911 14 7 6.4296 -3.1126 0.3235 15 6 7.7700 -3.2023 0.2156 16 8 8.3560 -2.5487 -0.6212 17 6 8.5405 -4.1147 1.1346 18 6 10.0096 -4.0318 0.8088 19 6 10.5635 -4.8919 -0.1214 20 6 11.9082 -4.8075 -0.4168 21 6 12.7139 -3.8730 0.2215 22 6 12.1628 -3.0183 1.1494 23 6 10.8074 -3.1015 1.4417 24 6 12.9735 -1.9747 1.8723 25 6 14.4648 -2.2897 1.7739 26 6 14.8124 -2.5277 0.2997 27 6 14.1763 -3.8453 -0.1385 28 6 5.5579 -2.2666 -0.5048 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0099 31 1 4.4800 -2.1603 2.1341 32 1 3.4696 -3.5973 1.7629 33 1 6.1095 -3.9341 2.2478 34 1 5.3438 -4.8354 0.9051 35 1 8.3796 -3.8094 2.1685 36 1 8.1964 -5.1403 1.0009 37 1 9.9446 -5.6245 -0.6180 38 1 12.3391 -5.4763 -1.1471 39 1 10.3746 -2.4321 2.1704 40 1 12.7822 -0.9985 1.4267 41 1 12.6795 -1.9545 2.9217 42 1 15.0435 -1.4490 2.1564 43 1 14.6901 -3.1847 2.3539 44 1 14.4201 -1.7112 -0.3065 45 1 15.8946 -2.5849 0.1823 46 1 14.2828 -3.9545 -1.2178 47 1 14.6844 -4.6722 0.3576 48 1 5.6348 -2.5665 -1.5499 49 1 5.8437 -1.2204 -0.3951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970683887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:07 Heat of formation + Delta-G solvation = -12.613647 kcal Electronic energy + Delta-G solvation = -27164.682933 eV Core-core repulsion = 23476.708766 eV Total energy + Delta-G solvation = -3687.974167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.48641 -39.66484 -37.55876 -36.34914 -34.28331 -33.01396 -32.06682 -31.48746 -29.87838 -29.45740 -28.48308 -26.98186 -23.95560 -23.47197 -22.71244 -22.50381 -22.07043 -20.22497 -19.58153 -18.89216 -17.78109 -16.98790 -16.46134 -16.29848 -15.78248 -15.48651 -15.03650 -14.68699 -14.52461 -14.15265 -14.05774 -14.02272 -13.77419 -13.31535 -13.27025 -12.97340 -12.74563 -12.64357 -12.51801 -12.28666 -12.07642 -11.95064 -11.86705 -11.55256 -11.48737 -11.42043 -11.21582 -10.92771 -10.73173 -10.71166 -10.57382 -10.52065 -10.12553 -9.78360 -9.65763 -9.01628 -8.81079 -8.54262 -8.49444 -7.37599 -5.84484 -3.21991 1.19454 1.29378 2.72025 3.05640 3.34562 3.38190 3.42746 3.63583 4.32772 4.39690 4.53175 4.57237 4.58222 4.66954 4.77123 4.80601 4.88281 4.92065 5.10388 5.15749 5.18715 5.20462 5.22928 5.25097 5.31529 5.35932 5.43843 5.50731 5.53853 5.60034 5.61896 5.64781 5.69574 5.73868 5.82379 5.86140 5.92600 5.99807 6.03125 6.11561 6.24974 6.32654 6.44444 6.47576 6.50026 6.52438 6.76558 6.90662 7.64144 7.89470 8.26627 8.33932 9.10606 9.83267 10.01423 11.33141 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002212 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.052152 B =12656.661410 C =13336.729634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.176 3.824 11 H 0.073 0.927 12 C -0.154 4.154 13 C 0.097 3.903 14 N -0.615 5.615 15 C 0.526 3.474 16 O -0.537 6.537 17 C -0.097 4.097 18 C -0.063 4.063 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.080 4.080 22 C -0.076 4.076 23 C -0.105 4.105 24 C -0.081 4.081 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.079 4.079 28 C 0.099 3.901 29 H 0.261 0.739 30 H 0.363 0.637 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.398 -11.505 4.928 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.065 3.935 11 H 0.091 0.909 12 C -0.195 4.195 13 C -0.026 4.026 14 N -0.350 5.350 15 C 0.314 3.686 16 O -0.413 6.413 17 C -0.137 4.137 18 C -0.064 4.064 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.080 4.080 22 C -0.076 4.076 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.116 4.116 28 C -0.024 4.024 29 H 0.071 0.929 30 H 0.197 0.803 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 28.515 -11.199 4.448 30.957 hybrid contribution 0.252 1.190 0.041 1.217 sum 28.767 -10.008 4.489 30.787 Atomic orbital electron populations 1.69693 1.05093 1.25999 1.56894 1.24672 0.95239 0.97269 1.01621 0.86580 0.79225 0.84935 0.77963 1.20910 1.21617 1.20292 1.19023 0.80177 0.94836 1.43805 0.88972 1.42720 1.04185 1.01491 1.89861 1.21163 0.88879 0.89943 0.93476 0.90914 1.23520 0.95281 0.99495 1.01175 1.22429 0.92355 0.95832 0.92000 1.48511 1.05421 1.44589 1.36485 1.20144 0.80557 0.83105 0.84778 1.90724 1.68088 1.45636 1.36886 1.20636 0.91882 1.00851 1.00287 1.19184 0.93540 0.96472 0.97188 1.20870 0.95074 0.99263 0.97195 1.21057 0.93747 0.98849 1.00116 1.19549 0.95585 0.96158 0.96715 1.19504 0.93763 0.97104 0.97192 1.20955 0.93077 0.97852 1.00376 1.20470 0.94224 0.97288 0.99839 1.21537 0.95571 1.01760 0.96751 1.21553 1.00135 0.97615 0.96531 1.20448 0.91666 0.98235 1.01250 1.22270 0.90508 0.94992 0.94629 0.92920 0.80342 0.90720 0.90031 0.91168 0.91354 0.88120 0.88060 0.86280 0.86299 0.86426 0.90633 0.90858 0.91527 0.91675 0.91549 0.91552 0.90915 0.90844 0.91395 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.97 55.49 0.78 -27.79 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.86 27.73 -169.99 -4.71 17.14 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.50 6.53 56.52 0.37 -6.13 16 7 C -0.25 -6.75 10.46 -15.06 -0.16 -6.91 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.74 -16.89 5.05 -51.65 -0.26 -17.15 16 10 C 0.18 3.19 3.59 -66.10 -0.24 2.96 16 11 H 0.07 1.33 8.12 -51.93 -0.42 0.90 16 12 C -0.15 -2.33 6.77 -24.58 -0.17 -2.50 16 13 C 0.10 1.14 6.69 -2.53 -0.02 1.13 16 14 N -0.62 -8.93 3.33 -170.52 -0.57 -9.50 16 15 C 0.53 7.79 7.84 -10.99 -0.09 7.71 16 16 O -0.54 -10.14 16.36 5.56 0.09 -10.05 16 17 C -0.10 -1.03 4.84 -29.03 -0.14 -1.17 16 18 C -0.06 -0.75 4.37 -104.72 -0.46 -1.20 16 19 C -0.11 -1.19 9.71 -39.68 -0.39 -1.57 16 20 C -0.12 -1.24 9.61 -39.44 -0.38 -1.62 16 21 C -0.08 -0.82 5.74 -104.61 -0.60 -1.42 16 22 C -0.08 -0.81 5.74 -104.61 -0.60 -1.41 16 23 C -0.10 -1.21 9.27 -39.45 -0.37 -1.58 16 24 C -0.08 -0.69 5.67 -28.05 -0.16 -0.85 16 25 C -0.12 -0.82 5.98 -26.70 -0.16 -0.98 16 26 C -0.12 -0.84 5.98 -26.70 -0.16 -1.00 16 27 C -0.08 -0.61 5.67 -28.05 -0.16 -0.77 16 28 C 0.10 1.67 6.62 -3.06 -0.02 1.65 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.36 8.32 5.37 -40.82 -0.22 8.10 16 31 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.66 7.48 -51.93 -0.39 0.28 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.88 7.79 -51.93 -0.40 0.48 16 36 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 38 H 0.12 0.98 8.05 -52.49 -0.42 0.56 16 39 H 0.12 1.24 8.05 -52.48 -0.42 0.82 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 44 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 LS Contribution 389.87 15.07 5.88 5.88 Total: -1.00 -33.39 389.87 -11.33 -44.71 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -8.18 Total: 6.14 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -4.35 Total: -9.39 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.05 Total: -54.44 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.39 -11.33 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970683887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.097 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds