Wall clock time and date at job start Tue Mar 31 2020 16:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99466 * 2 1 4 4 H 1.48499 * 109.46785 * 85.03786 * 3 2 1 5 5 H 1.48498 * 109.47476 * 325.03445 * 3 2 1 6 6 H 1.48502 * 109.46656 * 205.03232 * 3 2 1 7 7 C 1.38810 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99884 * 214.75899 * 7 2 1 9 9 N 1.36934 * 119.99991 * 34.76344 * 7 2 1 10 10 C 1.43467 * 118.93818 * 186.01923 * 9 7 2 11 11 C 1.53796 * 107.96125 * 273.60854 * 10 9 7 12 12 C 1.47139 * 111.84329 * 281.66763 * 11 10 9 13 13 N 1.48206 * 110.34052 * 58.29610 * 12 11 10 14 14 C 1.34786 * 119.97148 * 102.51497 * 13 12 11 15 15 O 1.21551 * 119.99698 * 353.98891 * 14 13 12 16 16 C 1.47841 * 120.00300 * 173.98837 * 14 13 12 17 17 C 1.39328 * 119.87679 * 304.62874 * 16 14 13 18 18 C 1.37950 * 119.60228 * 179.63239 * 17 16 14 19 19 C 1.38089 * 119.93148 * 0.65077 * 18 17 16 20 20 C 1.39026 * 120.86211 * 359.75980 * 19 18 17 21 21 C 1.37429 * 119.75901 * 359.80959 * 20 19 18 22 22 C 1.50612 * 122.63486 * 180.41980 * 21 20 19 23 23 C 1.52736 * 110.60202 * 342.33700 * 22 21 20 24 24 C 1.53331 * 108.35589 * 51.03024 * 23 22 21 25 25 C 1.50651 * 117.69950 * 179.64690 * 20 19 18 26 26 C 1.43625 * 120.06334 * 282.48998 * 13 12 11 27 27 C 1.48856 * 118.94090 * 5.75219 * 9 7 2 28 28 H 0.97000 * 120.00237 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.76491 * 33.22939 * 10 9 7 30 30 H 1.09004 * 109.76288 * 153.94314 * 10 9 7 31 31 H 1.08999 * 109.00340 * 42.27693 * 11 10 9 32 32 H 1.09004 * 109.00403 * 161.05809 * 11 10 9 33 33 H 1.08996 * 109.32380 * 178.56196 * 12 11 10 34 34 H 1.09000 * 109.32548 * 298.20623 * 12 11 10 35 35 H 1.07995 * 120.19941 * 359.88135 * 17 16 14 36 36 H 1.07996 * 120.03445 * 180.38337 * 18 17 16 37 37 H 1.07994 * 119.57051 * 179.78345 * 19 18 17 38 38 H 1.08998 * 109.25804 * 102.62947 * 22 21 20 39 39 H 1.09006 * 109.24974 * 222.08836 * 22 21 20 40 40 H 1.08992 * 109.69102 * 170.75090 * 23 22 21 41 41 H 1.09002 * 109.68743 * 291.31830 * 23 22 21 42 42 H 1.09002 * 109.68202 * 49.89299 * 24 23 22 43 43 H 1.08995 * 109.68628 * 170.45603 * 24 23 22 44 44 H 1.08997 * 109.25292 * 42.16381 * 25 20 19 45 45 H 1.09001 * 109.24840 * 282.74349 * 25 20 19 46 46 H 1.09001 * 108.87470 * 211.44506 * 26 13 12 47 47 H 1.08999 * 108.87395 * 329.88444 * 26 13 12 48 48 H 1.08998 * 109.48246 * 260.62067 * 27 9 7 49 49 H 1.08995 * 109.48485 * 20.66210 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3926 2.1070 1.3948 5 1 1.5039 2.6201 -0.8023 6 1 3.5962 1.4122 -0.5924 7 6 2.0103 -1.2021 -0.0005 8 1 2.9457 -1.2858 0.5327 9 7 1.5089 -2.2819 -0.6772 10 6 2.1746 -3.5470 -0.5564 11 6 3.2946 -3.5961 -1.6093 12 6 2.7711 -3.8932 -2.9520 13 7 1.7718 -2.8746 -3.3523 14 6 2.1137 -1.8995 -4.2178 15 8 3.2672 -1.7900 -4.5850 16 6 1.0858 -0.9634 -4.7205 17 6 -0.0579 -1.4579 -5.3440 18 6 -1.0170 -0.5796 -5.8041 19 6 -0.8327 0.7810 -5.6569 20 6 0.3093 1.2838 -5.0438 21 6 1.2680 0.4187 -4.5733 22 6 2.5245 0.8920 -3.8910 23 6 2.7746 2.3688 -4.1895 24 6 1.4905 3.1480 -3.8812 25 6 0.4410 2.7800 -4.9281 26 6 0.4391 -2.9257 -2.8192 27 6 0.2874 -2.1066 -1.5096 28 1 -0.4850 0.8400 0.0004 29 1 2.6022 -3.6448 0.4415 30 1 1.4651 -4.3553 -0.7340 31 1 3.8031 -2.6322 -1.6318 32 1 4.0117 -4.3677 -1.3291 33 1 3.5931 -3.8928 -3.6677 34 1 2.2986 -4.8754 -2.9457 35 1 -0.1946 -2.5226 -5.4627 36 1 -1.9091 -0.9555 -6.2829 37 1 -1.5856 1.4634 -6.0224 38 1 2.4223 0.7553 -2.8144 39 1 3.3706 0.3052 -4.2489 40 1 3.5871 2.7376 -3.5636 41 1 3.0353 2.4919 -5.2407 42 1 1.1282 2.8806 -2.8886 43 1 1.6915 4.2184 -3.9233 44 1 -0.5202 3.2040 -4.6378 45 1 0.7373 3.1904 -5.8935 46 1 -0.2537 -2.5328 -3.5634 47 1 0.1811 -3.9647 -2.6139 48 1 -0.5833 -2.4581 -0.9560 49 1 0.1618 -1.0516 -1.7532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981233162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:09 Heat of formation + Delta-G solvation = 18.521704 kcal Electronic energy + Delta-G solvation = -30906.624266 eV Core-core repulsion = 27220.000229 eV Total energy + Delta-G solvation = -3686.624037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.49294 -38.88126 -36.89050 -35.85665 -34.22047 -32.99901 -31.95943 -30.85220 -30.04885 -28.79238 -27.54714 -25.55795 -23.82795 -23.61943 -23.16340 -22.45888 -21.34468 -19.72799 -19.18130 -18.63104 -17.07097 -16.24897 -16.15902 -15.68971 -15.38441 -15.19003 -14.71671 -14.24759 -14.08242 -13.73225 -13.68934 -13.55118 -13.23459 -13.05065 -12.98150 -12.59689 -12.43454 -12.24376 -12.20866 -11.89884 -11.64699 -11.53107 -11.34675 -11.24097 -10.99939 -10.79062 -10.49997 -10.46640 -10.34358 -10.19412 -10.08287 -10.06789 -9.78517 -9.75781 -9.23277 -8.46745 -8.29300 -8.18981 -8.00095 -6.91614 -5.88115 -2.99628 1.32518 1.62098 3.10969 3.36454 3.46895 3.52506 3.54264 4.03485 4.54622 4.81540 4.87113 4.96156 5.14690 5.18380 5.21715 5.32356 5.38021 5.42042 5.46837 5.53697 5.60196 5.67429 5.75788 5.79944 5.87245 5.91633 5.99928 6.07070 6.09488 6.11176 6.15554 6.18150 6.32289 6.32774 6.38525 6.43004 6.50821 6.53889 6.59488 6.67918 6.70412 6.78978 6.93880 6.94893 7.06319 7.18156 7.36846 7.53262 7.83995 7.98596 8.33268 8.66171 9.16750 9.91174 10.31875 11.21600 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.007675 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.485744 B = 3647.324014 C = 4927.779129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.011 3.989 3 Si 0.855 3.145 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.592 5.592 10 C 0.164 3.836 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.577 5.577 14 C 0.569 3.431 15 O -0.548 6.548 16 C -0.115 4.115 17 C -0.094 4.094 18 C -0.131 4.131 19 C -0.105 4.105 20 C -0.084 4.084 21 C -0.012 4.012 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.074 4.074 26 C 0.073 3.927 27 C 0.152 3.848 28 H 0.253 0.747 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.032 0.968 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -1.352 -10.998 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.187 4.187 3 Si 0.684 3.316 4 H -0.221 1.221 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.090 0.910 9 N -0.313 5.313 10 C 0.035 3.965 11 C -0.211 4.211 12 C 0.009 3.991 13 N -0.307 5.307 14 C 0.357 3.643 15 O -0.428 6.428 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.149 4.149 19 C -0.123 4.123 20 C -0.084 4.084 21 C -0.013 4.013 22 C -0.140 4.140 23 C -0.153 4.153 24 C -0.166 4.166 25 C -0.111 4.111 26 C -0.052 4.052 27 C 0.027 3.973 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.050 0.950 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.587 -1.224 -11.166 11.344 hybrid contribution 0.263 0.844 0.251 0.919 sum -1.324 -0.379 -10.914 11.001 Atomic orbital electron populations 1.70268 1.05263 1.25564 1.51800 1.24478 0.94684 0.97627 1.01889 0.87016 0.80938 0.85960 0.77705 1.22055 1.20577 1.20303 1.19139 1.03000 0.88707 1.27537 0.91048 1.43812 1.29337 1.05475 1.52692 1.20241 0.92408 0.88134 0.95705 1.21864 1.00629 1.02128 0.96465 1.20566 0.91832 0.89427 0.97232 1.47294 1.12784 1.27997 1.42613 1.18246 0.87613 0.79882 0.78551 1.90676 1.19733 1.71887 1.60462 1.19864 0.95858 0.93627 1.02447 1.21019 0.92666 0.99543 0.98020 1.20855 0.99150 0.93240 1.01613 1.21193 0.96881 0.95458 0.98777 1.19522 0.94164 0.95492 0.99213 1.19510 0.95622 0.90983 0.95170 1.20782 0.95557 0.96262 1.01392 1.21507 0.97482 0.95039 1.01233 1.21671 0.95529 0.99506 0.99878 1.20414 0.99863 0.91306 0.99490 1.22387 0.82885 1.01118 0.98840 1.22202 0.87701 1.00778 0.86651 0.93739 0.93797 0.94808 0.90998 0.92694 0.90532 0.92103 0.85818 0.85863 0.86221 0.89452 0.88650 0.91692 0.91882 0.90919 0.91740 0.90877 0.90931 0.90581 0.92354 0.94991 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 11.04 55.49 0.61 -24.06 16 2 C 0.01 0.31 4.63 -17.43 -0.08 0.22 16 3 Si 0.85 21.23 28.06 -169.99 -4.77 16.46 16 4 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 5 H -0.28 -6.75 6.11 56.52 0.35 -6.41 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.26 -6.87 9.28 -15.06 -0.14 -7.01 16 8 H 0.07 1.94 8.02 -52.49 -0.42 1.52 16 9 N -0.59 -14.07 2.55 -171.78 -0.44 -14.51 16 10 C 0.16 3.27 5.63 -5.23 -0.03 3.24 16 11 C -0.17 -3.08 5.64 -29.13 -0.16 -3.24 16 12 C 0.13 2.21 5.67 -5.92 -0.03 2.18 16 13 N -0.58 -10.74 2.46 -177.55 -0.44 -11.18 16 14 C 0.57 11.44 6.43 -12.33 -0.08 11.36 16 15 O -0.55 -12.25 14.55 5.32 0.08 -12.17 16 16 C -0.12 -2.13 4.93 -104.83 -0.52 -2.64 16 17 C -0.09 -1.44 7.54 -39.28 -0.30 -1.73 16 18 C -0.13 -1.76 10.03 -39.74 -0.40 -2.15 16 19 C -0.10 -1.46 9.60 -39.34 -0.38 -1.84 16 20 C -0.08 -1.35 5.73 -104.65 -0.60 -1.95 16 21 C -0.01 -0.23 5.77 -104.23 -0.60 -0.83 16 22 C -0.10 -2.04 5.02 -28.06 -0.14 -2.18 16 23 C -0.12 -1.89 5.98 -26.70 -0.16 -2.05 16 24 C -0.13 -2.00 5.98 -26.70 -0.16 -2.16 16 25 C -0.07 -1.02 5.67 -28.04 -0.16 -1.18 16 26 C 0.07 1.31 5.10 -4.39 -0.02 1.29 16 27 C 0.15 3.44 5.59 -1.56 -0.01 3.44 16 28 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.04 0.89 8.02 -51.93 -0.42 0.47 16 30 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 31 H 0.07 1.57 7.91 -51.93 -0.41 1.16 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.31 7.20 -51.93 -0.37 0.94 16 34 H 0.06 0.86 8.05 -51.93 -0.42 0.45 16 35 H 0.12 1.64 7.48 -52.49 -0.39 1.25 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.32 8.05 -52.49 -0.42 0.90 16 38 H 0.09 2.02 6.41 -51.93 -0.33 1.69 16 39 H 0.10 2.00 5.95 -51.93 -0.31 1.69 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.07 1.35 7.10 -51.93 -0.37 0.98 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.92 8.12 -51.93 -0.42 0.49 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.27 4.37 -51.93 -0.23 1.04 16 47 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 48 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 2.44 5.71 -51.93 -0.30 2.14 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -30.37 366.08 -11.16 -41.54 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.75 Total: 5.66 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.97 Total: -7.25 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.26 Total: -49.74 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.77 Total: 16.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.37 -11.16 -41.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981233162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.057 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds