Wall clock time and date at job start Tue Mar 31 2020 16:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48504 * 109.47069 * 269.99365 * 3 2 1 5 5 H 1.48497 * 109.47337 * 29.99486 * 3 2 1 6 6 H 1.48502 * 109.47298 * 149.99537 * 3 2 1 7 7 C 1.38816 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00000 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99711 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 324.99786 * 10 9 7 12 12 C 1.52996 * 109.47258 * 85.00171 * 10 9 7 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46991 * 299.99311 * 13 12 10 15 15 C 1.53006 * 109.46626 * 60.00378 * 14 13 12 16 16 H 1.09001 * 109.46998 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47249 * 60.00049 * 15 14 13 18 18 C 1.34770 * 120.00256 * 84.99846 * 17 15 14 19 19 O 1.21550 * 120.00262 * 359.97438 * 18 17 15 20 20 C 1.47848 * 119.99966 * 180.02562 * 18 17 15 21 21 C 1.39492 * 120.04337 * 359.71958 * 20 18 17 22 22 C 1.37928 * 119.76984 * 179.78843 * 21 20 18 23 23 C 1.38267 * 120.09669 * 0.45800 * 22 21 20 24 24 C 1.38615 * 120.52396 * 359.78910 * 23 22 21 25 25 C 1.37979 * 119.93461 * 359.97438 * 24 23 22 26 26 C 1.51342 * 109.83102 * 179.97438 * 25 24 23 27 27 C 1.54347 * 105.15487 * 17.16800 * 26 25 24 28 28 C 1.51400 * 130.30700 * 179.97438 * 24 23 22 29 29 C 1.52997 * 109.47127 * 299.99539 * 15 14 13 30 30 H 0.97001 * 119.99620 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46993 * 300.00050 * 12 10 9 33 33 H 1.09000 * 109.47380 * 59.99156 * 12 10 9 34 34 H 1.09002 * 109.47153 * 179.97438 * 13 12 10 35 35 H 1.08993 * 109.47194 * 60.00154 * 13 12 10 36 36 H 1.08993 * 109.47839 * 300.00447 * 14 13 12 37 37 H 1.09000 * 109.47160 * 180.02562 * 14 13 12 38 38 H 0.97005 * 119.99374 * 264.99912 * 17 15 14 39 39 H 1.08002 * 120.11581 * 0.02562 * 21 20 18 40 40 H 1.07998 * 119.95621 * 180.24133 * 22 21 20 41 41 H 1.07997 * 119.73953 * 179.81325 * 23 22 21 42 42 H 1.09001 * 110.30799 * 136.09044 * 26 25 24 43 43 H 1.09005 * 110.30628 * 258.14849 * 26 25 24 44 44 H 1.08997 * 110.83118 * 91.91090 * 27 26 25 45 45 H 1.09000 * 110.83099 * 215.48184 * 27 26 25 46 46 H 1.08990 * 110.30696 * 43.91145 * 28 24 23 47 47 H 1.09002 * 110.30068 * 281.75753 * 28 24 23 48 48 H 1.09002 * 109.47153 * 180.02562 * 29 15 14 49 49 H 1.08996 * 109.46952 * 300.00302 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5644 -3.2066 0.5902 12 6 4.2588 -2.9752 -1.4360 13 6 5.0242 -4.3000 -1.4360 14 6 6.4112 -4.0875 -0.8261 15 6 6.2645 -3.5833 0.6110 16 1 7.2526 -3.4323 1.0457 17 7 5.5291 -4.5723 1.4029 18 6 6.1848 -5.6047 1.9692 19 8 7.3863 -5.7155 1.8224 20 6 5.4424 -6.6031 2.7679 21 6 4.0643 -6.4742 2.9408 22 6 3.3766 -7.4114 3.6834 23 6 4.0529 -8.4695 4.2621 24 6 5.4230 -8.6026 4.0998 25 6 6.1215 -7.6745 3.3552 26 6 7.5904 -8.0380 3.3286 27 6 7.6481 -9.5167 3.7671 28 6 6.3738 -9.6567 4.6262 29 6 5.4991 -2.2585 0.6111 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3622 0.0014 32 1 3.2707 -3.1261 -1.8707 33 1 4.8063 -2.2396 -2.0251 34 1 5.1283 -4.6594 -2.4597 35 1 4.4770 -5.0358 -0.8469 36 1 6.9585 -3.3517 -1.4152 37 1 6.9568 -5.0312 -0.8265 38 1 4.5701 -4.4841 1.5197 39 1 3.5369 -5.6457 2.4917 40 1 2.3090 -7.3166 3.8160 41 1 3.5092 -9.1982 4.8449 42 1 7.9896 -7.9265 2.3205 43 1 8.1475 -7.4129 4.0266 44 1 7.6067 -10.1793 2.9025 45 1 8.5405 -9.7100 4.3624 46 1 5.9423 -10.6501 4.5043 47 1 6.6031 -9.4692 5.6752 48 1 5.3949 -1.8991 1.6348 49 1 6.0463 -1.5227 0.0219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981547741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:42 Heat of formation + Delta-G solvation = -15.174302 kcal Electronic energy + Delta-G solvation = -28227.959500 eV Core-core repulsion = 24539.874294 eV Total energy + Delta-G solvation = -3688.085206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79230 -39.56988 -37.82191 -35.92083 -34.60345 -33.10990 -31.78781 -31.35626 -29.69580 -29.19443 -28.37508 -27.37436 -24.16984 -23.44680 -22.25523 -21.66610 -21.24141 -20.85014 -20.44362 -18.92205 -17.73969 -17.38342 -16.25526 -15.95056 -15.57598 -15.40973 -15.07062 -14.84836 -14.63467 -14.45354 -13.84766 -13.68830 -13.51600 -13.30123 -13.02133 -12.86670 -12.78224 -12.58522 -12.24804 -12.01949 -11.94780 -11.83917 -11.51585 -11.41620 -11.33131 -11.27813 -11.09614 -11.02169 -10.92494 -10.44188 -10.28005 -10.10618 -9.75039 -9.73030 -9.61014 -9.12266 -8.95292 -8.82335 -8.71767 -7.31372 -5.81114 -3.16860 0.73617 1.16128 2.84693 3.22483 3.34725 3.37790 3.43064 3.71630 4.16194 4.35281 4.55593 4.62524 4.76970 4.80107 4.86614 4.89802 4.99572 5.02874 5.07497 5.26714 5.29086 5.42362 5.46526 5.48004 5.53548 5.58266 5.60153 5.62921 5.69401 5.75981 5.82763 5.87261 5.95049 5.95293 6.00023 6.01807 6.11676 6.14777 6.22014 6.25105 6.36444 6.39320 6.40902 6.61348 6.61939 6.70786 6.82812 6.96983 7.59124 7.94217 8.26867 8.37896 9.16219 9.89022 10.08634 11.37115 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.002952 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.354328 B = 9481.710710 C =10421.477998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.185 3.815 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.128 4.128 15 C 0.153 3.847 16 H 0.085 0.915 17 N -0.714 5.714 18 C 0.557 3.443 19 O -0.541 6.541 20 C -0.124 4.124 21 C -0.084 4.084 22 C -0.126 4.126 23 C -0.084 4.084 24 C -0.113 4.113 25 C -0.035 4.035 26 C -0.079 4.079 27 C -0.124 4.124 28 C -0.080 4.080 29 C -0.138 4.138 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.402 0.598 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.801 -18.595 7.170 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.076 3.924 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.048 3.952 16 H 0.103 0.897 17 N -0.367 5.367 18 C 0.345 3.655 19 O -0.420 6.420 20 C -0.127 4.127 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.102 4.102 24 C -0.113 4.113 25 C -0.036 4.036 26 C -0.116 4.116 27 C -0.161 4.161 28 C -0.117 4.117 29 C -0.177 4.177 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.240 0.760 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.396 -18.687 7.067 24.625 hybrid contribution -0.220 1.434 -0.037 1.451 sum 14.175 -17.254 7.030 23.410 Atomic orbital electron populations 1.69699 1.05118 1.25857 1.57438 1.24672 0.95218 0.97226 1.01984 0.86554 0.79212 0.85002 0.77766 1.21123 1.21799 1.20304 1.19048 0.80544 0.94642 1.43130 0.89243 1.42786 1.04008 1.01952 1.90317 1.20117 0.89849 0.89065 0.93395 0.93352 1.22245 1.00156 0.95385 0.99915 1.21499 0.95484 0.98455 0.99951 1.21904 0.97867 1.01437 0.95396 1.20931 0.95860 0.87411 0.90980 0.89655 1.46150 1.12251 1.26095 1.52181 1.18286 0.87043 0.81210 0.78971 1.90717 1.14206 1.75327 1.61727 1.19593 0.93716 0.96995 1.02371 1.21327 0.92769 0.98850 0.97352 1.21025 1.00370 0.94612 0.98397 1.20824 0.92957 0.97818 0.98624 1.20613 0.93786 0.97675 0.99200 1.20573 0.96386 0.92558 0.94054 1.21090 0.91730 0.95206 1.03588 1.22361 0.97452 0.96617 0.99691 1.21045 0.93783 0.97118 0.99760 1.22176 0.97576 0.95680 1.02233 0.93048 0.80616 0.91554 0.92615 0.92660 0.92468 0.91177 0.91938 0.76017 0.85112 0.84993 0.85879 0.89294 0.89903 0.90970 0.90494 0.90687 0.90200 0.91135 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 7 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 N -0.75 -16.78 4.92 -53.42 -0.26 -17.04 16 10 C 0.19 3.27 2.60 -67.93 -0.18 3.09 16 11 H 0.05 0.86 6.44 -51.93 -0.33 0.53 16 12 C -0.14 -2.25 5.50 -26.73 -0.15 -2.39 16 13 C -0.12 -1.58 5.77 -26.73 -0.15 -1.73 16 14 C -0.13 -1.65 5.60 -26.73 -0.15 -1.80 16 15 C 0.15 2.05 2.78 -67.93 -0.19 1.86 16 16 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 17 N -0.71 -9.44 4.18 -54.75 -0.23 -9.67 16 18 C 0.56 7.92 7.74 -12.33 -0.10 7.82 16 19 O -0.54 -8.83 14.36 5.32 0.08 -8.75 16 20 C -0.12 -1.58 5.88 -104.92 -0.62 -2.20 16 21 C -0.08 -0.95 9.54 -39.23 -0.37 -1.33 16 22 C -0.13 -1.25 10.03 -39.68 -0.40 -1.65 16 23 C -0.08 -0.79 10.03 -39.43 -0.40 -1.18 16 24 C -0.11 -1.15 6.13 -104.23 -0.64 -1.78 16 25 C -0.03 -0.42 6.03 -103.83 -0.63 -1.04 16 26 C -0.08 -0.85 5.58 -26.86 -0.15 -1.00 16 27 C -0.12 -0.96 7.08 -25.33 -0.18 -1.14 16 28 C -0.08 -0.61 6.77 -26.85 -0.18 -0.79 16 29 C -0.14 -2.03 5.07 -26.73 -0.14 -2.17 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.36 8.05 5.66 -40.82 -0.23 7.81 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 5.09 4.89 -40.82 -0.20 4.89 16 39 H 0.13 1.36 6.40 -52.49 -0.34 1.02 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.09 1.07 7.19 -51.93 -0.37 0.70 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -31.90 379.90 -11.26 -43.17 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.77 Total: 11.69 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -4.86 Total: -14.14 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.28 Total: -54.68 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.90 -11.26 -43.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981547741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds