Wall clock time and date at job start Tue Mar 31 2020 14:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39908 * 109.46847 * 2 1 4 4 F 1.39900 * 109.47483 * 240.00405 * 2 1 3 5 5 C 1.53002 * 109.47484 * 119.99918 * 2 1 3 6 6 C 1.50703 * 115.54781 * 301.25279 * 5 2 1 7 7 O 1.21281 * 119.99692 * 90.34399 * 6 5 2 8 8 N 1.34774 * 120.00191 * 270.34849 * 6 5 2 9 9 C 1.47672 * 134.45580 * 184.80437 * 8 6 5 10 10 C 1.53458 * 86.09600 * 155.77295 * 9 8 6 11 11 C 1.47919 * 134.54608 * 4.73386 * 8 6 5 12 12 C 1.52638 * 113.67497 * 137.82995 * 10 9 8 13 13 C 1.53186 * 109.34549 * 74.01701 * 12 10 9 14 14 C 1.53149 * 109.34834 * 59.07057 * 13 12 10 15 15 N 1.46902 * 109.09416 * 303.54284 * 14 13 12 16 16 C 1.36938 * 120.68614 * 235.36377 * 15 14 13 17 17 H 1.07994 * 120.00458 * 32.00548 * 16 15 14 18 18 C 1.38814 * 119.99406 * 212.01170 * 16 15 14 19 19 N 1.31617 * 120.00574 * 11.02763 * 18 16 15 20 20 Si 1.86807 * 119.99792 * 191.03307 * 18 16 15 21 21 H 1.48508 * 109.46929 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47075 * 119.99573 * 20 18 16 23 23 H 1.48500 * 109.46988 * 239.99963 * 20 18 16 24 24 C 1.47113 * 118.62137 * 55.33885 * 15 14 13 25 25 C 1.52998 * 117.51659 * 86.94834 * 5 2 1 26 26 C 1.52998 * 117.50100 * 155.58245 * 5 2 1 27 27 H 1.08999 * 109.47263 * 305.20005 * 1 2 3 28 28 H 1.09001 * 109.47049 * 65.20427 * 1 2 3 29 29 H 1.09003 * 109.46958 * 185.20022 * 1 2 3 30 30 H 1.08997 * 113.79171 * 41.44891 * 9 8 6 31 31 H 1.08998 * 113.79080 * 270.09776 * 9 8 6 32 32 H 1.09000 * 113.68351 * 89.96057 * 11 8 6 33 33 H 1.09001 * 113.96937 * 318.53750 * 11 8 6 34 34 H 1.08990 * 109.49052 * 193.97825 * 12 10 9 35 35 H 1.08996 * 109.48950 * 314.05723 * 12 10 9 36 36 H 1.08995 * 109.49200 * 179.02909 * 13 12 10 37 37 H 1.08999 * 109.49426 * 299.08657 * 13 12 10 38 38 H 1.08997 * 109.53913 * 63.42718 * 14 13 12 39 39 H 1.09005 * 109.53530 * 183.58699 * 14 13 12 40 40 H 0.96998 * 120.00314 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.63600 * 188.92477 * 24 15 14 42 42 H 1.09001 * 109.63980 * 68.31625 * 24 15 14 43 43 H 1.08997 * 117.49997 * 214.97056 * 25 5 2 44 44 H 1.09003 * 117.49908 * 0.02562 * 25 5 2 45 45 H 1.08996 * 117.49997 * 359.97438 * 26 5 2 46 46 H 1.09000 * 117.49931 * 145.00270 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 1.5917 -0.1385 2.5648 7 8 0.5679 -0.5301 3.0839 8 7 2.3282 0.8178 3.1642 9 6 2.2467 1.5282 4.4563 10 6 3.7552 1.7644 4.3021 11 6 3.5428 1.5766 2.7942 12 6 4.1977 3.1729 4.6893 13 6 4.1681 3.3129 6.2145 14 6 5.1017 2.2710 6.8378 15 7 4.6983 0.9328 6.3858 16 6 4.4069 -0.0524 7.2912 17 1 3.9704 0.2030 8.2454 18 6 4.6729 -1.3794 6.9826 19 7 5.3970 -1.6766 5.9244 20 14 4.0030 -2.7434 8.0690 21 1 3.2264 -2.1495 9.1868 22 1 3.1196 -3.6267 7.2663 23 1 5.1310 -3.5381 8.6179 24 6 4.6133 0.6731 4.9403 25 6 2.2076 -2.2399 1.1698 26 6 3.4406 -1.3341 1.1888 27 1 -0.3634 0.5924 0.8397 28 1 -0.3633 0.4310 -0.9329 29 1 -0.3633 -1.0235 0.0931 30 1 1.9860 0.8844 5.2963 31 1 1.6526 2.4412 4.4194 32 1 3.3341 2.5040 2.2607 33 1 4.3127 0.9731 2.3135 34 1 5.2108 3.3481 4.3276 35 1 3.5209 3.9020 4.2440 36 1 4.5003 4.3125 6.4945 37 1 3.1519 3.1530 6.5748 38 1 6.1273 2.4673 6.5255 39 1 5.0347 2.3254 7.9245 40 1 5.5831 -2.6039 5.7090 41 1 4.1542 -0.3007 4.7694 42 1 5.6126 0.6916 4.5053 43 1 1.9937 -2.8176 2.0690 44 1 1.9548 -2.7255 0.2272 45 1 3.9985 -1.2239 0.2589 46 1 4.0377 -1.3160 2.1005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982016514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:40 Heat of formation + Delta-G solvation = -53.813320 kcal Electronic energy + Delta-G solvation = -30589.652263 eV Core-core repulsion = 26345.662014 eV Total energy + Delta-G solvation = -4243.990249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.10476 -47.09582 -40.51453 -38.71504 -36.40058 -35.70774 -32.95533 -31.39315 -30.42271 -29.76908 -26.56378 -25.82781 -25.39797 -24.56368 -22.63257 -22.27208 -21.99892 -20.56807 -18.89533 -17.89770 -17.61329 -17.34069 -16.73872 -16.40368 -16.06974 -15.46130 -15.18501 -14.78204 -14.26705 -14.07206 -13.86538 -13.64610 -13.59733 -13.43791 -13.20116 -13.15239 -12.95217 -12.68417 -12.57963 -12.37895 -12.17866 -12.02335 -11.80791 -11.57192 -11.43790 -11.36338 -10.94956 -10.80665 -10.64502 -10.49450 -10.43847 -10.26938 -10.09070 -9.94594 -9.85912 -9.49914 -9.30701 -8.53040 -8.33616 -6.65817 -5.84036 -3.30877 2.64373 2.92935 3.35544 3.39780 3.43992 3.44912 3.61549 4.00040 4.17342 4.44500 4.46292 4.52854 4.76008 4.83170 4.87207 5.26507 5.27498 5.35314 5.44536 5.48080 5.54348 5.55348 5.56976 5.68374 5.71459 5.75589 5.76782 5.82650 5.87945 5.94589 6.07541 6.14878 6.19398 6.26788 6.40083 6.49497 6.56995 6.74069 6.82362 6.96323 7.24048 7.55458 7.77141 7.99628 8.36535 8.42886 9.17623 9.79086 10.37542 11.24878 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.004868 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.375913 B = 5750.343036 C = 6945.866939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.337 3.663 3 F -0.194 7.194 4 F -0.195 7.195 5 C -0.215 4.215 6 C 0.579 3.421 7 O -0.537 6.537 8 N -0.623 5.623 9 C 0.125 3.875 10 C -0.111 4.111 11 C 0.109 3.891 12 C -0.094 4.094 13 C -0.134 4.134 14 C 0.144 3.856 15 N -0.589 5.589 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.009 3.991 19 N -0.903 5.903 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.202 3.798 25 C -0.126 4.126 26 C -0.145 4.145 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.053 0.947 40 H 0.253 0.747 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 6.265 -12.004 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.301 3.699 3 F -0.175 7.175 4 F -0.176 7.176 5 C -0.219 4.219 6 C 0.366 3.634 7 O -0.414 6.414 8 N -0.356 5.356 9 C 0.003 3.997 10 C -0.114 4.114 11 C -0.014 4.014 12 C -0.132 4.132 13 C -0.174 4.174 14 C 0.018 3.982 15 N -0.312 5.312 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.216 1.216 24 C 0.076 3.924 25 C -0.163 4.163 26 C -0.182 4.182 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.386 5.742 -11.868 14.242 hybrid contribution -0.207 -0.626 0.257 0.707 sum -5.593 5.117 -11.612 13.867 Atomic orbital electron populations 1.22696 0.90699 1.06113 1.04960 1.19986 0.93675 0.74987 0.81292 1.93027 1.90643 1.37104 1.96714 1.92993 1.90692 1.81085 1.52797 1.22268 1.06118 0.99411 0.94080 1.18411 0.82329 0.79063 0.83572 1.90694 1.23956 1.61420 1.65344 1.49879 1.28740 1.36201 1.20809 1.23191 0.96109 0.94953 0.85406 1.23005 0.95965 0.99076 0.93346 1.23383 0.85525 0.94784 0.97711 1.21283 1.00719 0.94431 0.96789 1.22024 1.01312 0.98850 0.95168 1.20903 0.94316 0.85821 0.97173 1.43967 1.78360 1.07467 1.01360 1.19172 1.34471 0.86128 0.98475 0.91799 1.25137 0.97755 0.98126 0.97996 1.69961 1.39392 1.17471 1.27887 0.86266 0.78321 0.82327 0.80165 1.20170 1.21551 1.21591 1.20481 0.94607 0.94437 0.82914 1.23050 1.00191 0.88171 1.04871 1.23244 0.89192 1.00381 1.05418 0.89149 0.90047 0.88846 0.89224 0.90936 0.90114 0.90078 0.91984 0.93084 0.93000 0.92352 0.96402 0.92847 0.93691 0.89390 0.95741 0.87004 0.87178 0.87317 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 9.06 37.16 0.34 -1.79 16 2 C 0.34 4.43 2.08 -26.73 -0.06 4.38 16 3 F -0.19 -2.72 16.98 2.25 0.04 -2.69 16 4 F -0.19 -2.48 15.63 2.25 0.04 -2.45 16 5 C -0.21 -3.14 1.48 -155.66 -0.23 -3.37 16 6 C 0.58 10.40 6.33 -10.98 -0.07 10.34 16 7 O -0.54 -11.27 17.66 5.56 0.10 -11.17 16 8 N -0.62 -10.79 3.48 -179.37 -0.63 -11.41 16 9 C 0.12 2.20 7.62 -3.17 -0.02 2.18 16 10 C -0.11 -1.89 0.87 -154.42 -0.13 -2.03 16 11 C 0.11 1.64 7.58 -3.04 -0.02 1.62 16 12 C -0.09 -1.39 5.07 -26.82 -0.14 -1.52 16 13 C -0.13 -2.12 6.01 -26.56 -0.16 -2.28 16 14 C 0.14 2.83 6.45 -3.75 -0.02 2.81 16 15 N -0.59 -13.90 2.99 -172.46 -0.52 -14.41 16 16 C -0.25 -6.70 9.57 -15.06 -0.14 -6.85 16 17 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 18 C 0.01 0.24 5.04 -17.43 -0.09 0.15 16 19 N -0.90 -25.24 11.18 55.49 0.62 -24.62 16 20 Si 0.90 21.70 29.57 -169.99 -5.03 16.68 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.20 4.42 4.28 -3.82 -0.02 4.41 16 25 C -0.13 -1.66 9.66 -26.73 -0.26 -1.92 16 26 C -0.15 -1.98 8.74 -26.73 -0.23 -2.21 16 27 H 0.09 1.14 7.60 -51.93 -0.39 0.74 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.87 8.09 -51.93 -0.42 1.45 16 31 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.08 1.19 7.14 -51.93 -0.37 0.82 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.09 2.23 6.19 -51.93 -0.32 1.91 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.11 1.20 7.74 -51.93 -0.40 0.80 16 45 H 0.11 1.29 7.82 -51.93 -0.41 0.89 16 46 H 0.12 1.84 7.94 -51.93 -0.41 1.43 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -30.13 374.50 -8.31 -38.44 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.32 Total: 2.08 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.26 Total: 3.90 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.52 Total: -50.44 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.10 Total: -11.17 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.07 Total: -5.13 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.13 -8.31 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982016514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.374 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds