Wall clock time and date at job start Tue Mar 31 2020 16:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46917 * 85.29035 * 3 2 1 5 5 H 1.48491 * 109.47226 * 325.29150 * 3 2 1 6 6 H 1.48506 * 109.46872 * 205.28778 * 3 2 1 7 7 C 1.38817 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00093 * 196.30487 * 7 2 1 9 9 N 1.36937 * 119.99662 * 16.30154 * 7 2 1 10 10 C 1.43464 * 118.93802 * 205.31856 * 9 7 2 11 11 C 1.53240 * 108.26035 * 273.77983 * 10 9 7 12 12 C 1.47144 * 111.81172 * 281.67747 * 11 10 9 13 13 N 1.48217 * 110.34503 * 58.23113 * 12 11 10 14 14 C 1.34773 * 119.97025 * 102.50213 * 13 12 11 15 15 O 1.21552 * 119.99523 * 175.08213 * 14 13 12 16 16 C 1.47840 * 120.00371 * 355.08478 * 14 13 12 17 17 C 1.39604 * 120.27066 * 123.40015 * 16 14 13 18 18 C 1.37634 * 119.62221 * 180.09577 * 17 16 14 19 19 C 1.39075 * 120.75091 * 0.03229 * 18 17 16 20 20 C 1.37833 * 119.90195 * 359.73313 * 19 18 17 21 21 C 1.38652 * 119.82732 * 0.09347 * 20 19 18 22 22 C 1.50662 * 122.54623 * 180.47634 * 20 19 18 23 23 C 1.52724 * 110.59537 * 342.09031 * 22 20 19 24 24 C 1.53323 * 108.37181 * 51.17720 * 23 22 20 25 25 C 1.50683 * 117.60141 * 179.35411 * 19 18 17 26 26 C 1.43620 * 120.05231 * 282.48422 * 13 12 11 27 27 C 1.48861 * 118.94127 * 25.58615 * 9 7 2 28 28 H 0.97002 * 120.00040 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.76276 * 33.24974 * 10 9 7 30 30 H 1.08999 * 109.76193 * 154.01672 * 10 9 7 31 31 H 1.08998 * 109.07708 * 161.04846 * 11 10 9 32 32 H 1.09000 * 108.90879 * 42.20046 * 11 10 9 33 33 H 1.08999 * 109.32952 * 297.95986 * 12 11 10 34 34 H 1.09004 * 109.18014 * 178.40635 * 12 11 10 35 35 H 1.08002 * 120.18997 * 0.07846 * 17 16 14 36 36 H 1.07994 * 119.62224 * 180.02562 * 18 17 16 37 37 H 1.08000 * 119.77875 * 180.02562 * 21 20 19 38 38 H 1.08994 * 109.25384 * 102.38459 * 22 20 19 39 39 H 1.09003 * 109.25014 * 221.80925 * 22 20 19 40 40 H 1.08994 * 109.68549 * 170.89905 * 23 22 20 41 41 H 1.09005 * 109.68394 * 291.46097 * 23 22 20 42 42 H 1.09003 * 109.67609 * 49.80963 * 24 23 22 43 43 H 1.08993 * 109.67971 * 170.35845 * 24 23 22 44 44 H 1.08990 * 109.25649 * 282.80628 * 25 19 18 45 45 H 1.09006 * 109.24926 * 42.22960 * 25 19 18 46 46 H 1.09000 * 108.87575 * 329.88560 * 26 13 12 47 47 H 1.09001 * 108.87138 * 211.44429 * 26 13 12 48 48 H 1.09001 * 109.47731 * 260.60055 * 27 9 7 49 49 H 1.08996 * 109.47929 * 20.62969 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3981 2.1039 1.3954 5 1 1.5010 2.6219 -0.7971 6 1 3.5940 1.4134 -0.5981 7 6 2.0103 -1.2022 0.0005 8 1 3.0577 -1.2208 0.2631 9 7 1.3669 -2.3644 -0.3318 10 6 1.8733 -3.6075 0.1746 11 6 2.9590 -4.1095 -0.7832 12 6 2.3824 -4.7293 -1.9867 13 7 1.5132 -3.7624 -2.6983 14 6 1.9623 -3.1435 -3.8082 15 8 1.2202 -2.4193 -4.4425 16 6 3.3573 -3.3455 -4.2541 17 6 3.6233 -3.8236 -5.5384 18 6 4.9270 -4.0086 -5.9390 19 6 5.9823 -3.7251 -5.0786 20 6 5.7263 -3.2482 -3.8111 21 6 4.4168 -3.0548 -3.3984 22 6 6.8234 -2.9120 -2.8347 23 6 8.1365 -3.5688 -3.2549 24 6 8.4004 -3.2240 -4.7254 25 6 7.3805 -3.9677 -5.5852 26 6 0.1928 -3.4847 -2.2063 27 6 0.1681 -2.2978 -1.2118 28 1 -0.4850 0.8401 -0.0004 29 1 2.3037 -3.4543 1.1642 30 1 1.0665 -4.3381 0.2319 31 1 3.5774 -4.8440 -0.2673 32 1 3.5833 -3.2674 -1.0820 33 1 1.7928 -5.5992 -1.6973 34 1 3.1890 -5.0444 -2.6488 35 1 2.8107 -4.0474 -6.2137 36 1 5.1328 -4.3781 -6.9327 37 1 4.2171 -2.6807 -2.4051 38 1 6.9566 -1.8307 -2.8021 39 1 6.5441 -3.2691 -1.8434 40 1 8.9507 -3.1900 -2.6372 41 1 8.0597 -4.6500 -3.1394 42 1 8.2932 -2.1497 -4.8755 43 1 9.4083 -3.5348 -5.0002 44 1 7.5943 -5.0359 -5.5530 45 1 7.4555 -3.6177 -6.6149 46 1 -0.1906 -4.3732 -1.7046 47 1 -0.4560 -3.2510 -3.0504 48 1 -0.7338 -2.3531 -0.6022 49 1 0.1755 -1.3591 -1.7658 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989608545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:13 Heat of formation + Delta-G solvation = 9.300167 kcal Electronic energy + Delta-G solvation = -29636.655243 eV Core-core repulsion = 25949.631330 eV Total energy + Delta-G solvation = -3687.023913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.46530 -39.18771 -37.00339 -35.84547 -34.31003 -32.71672 -32.25293 -31.06231 -30.29105 -28.98978 -27.51198 -25.43387 -24.37177 -23.58619 -23.04628 -22.28402 -21.82786 -19.97874 -19.51035 -18.36801 -17.04042 -16.70196 -16.18212 -15.65703 -15.60146 -15.19374 -14.60191 -14.38207 -14.13281 -13.97088 -13.86790 -13.72236 -13.28903 -13.22456 -12.96489 -12.91118 -12.61771 -12.46746 -12.26162 -12.14623 -11.65564 -11.54940 -11.36189 -11.17956 -11.03952 -10.91782 -10.74104 -10.62232 -10.54699 -10.50022 -10.18724 -10.14610 -9.77346 -9.67999 -9.33813 -8.65357 -8.47386 -8.40153 -8.00184 -6.66135 -5.75017 -3.17070 1.18368 1.45731 3.12377 3.39549 3.48034 3.48835 3.55841 3.82325 4.51903 4.54063 4.57642 4.74808 4.79620 4.95405 5.01662 5.13132 5.23539 5.31536 5.39356 5.42955 5.45096 5.48421 5.54114 5.66139 5.69552 5.73479 5.76944 5.83755 5.86550 5.90872 5.94004 6.04793 6.13486 6.17272 6.18697 6.24378 6.40746 6.42551 6.45217 6.48309 6.59354 6.65944 6.78774 6.96207 7.03495 7.08724 7.46607 7.64842 7.82428 7.94025 8.48418 8.70622 9.24385 9.93200 10.38896 11.33142 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.004612 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.116300 B = 6069.229170 C = 6948.746482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.178 4.178 12 C 0.122 3.878 13 N -0.577 5.577 14 C 0.560 3.440 15 O -0.541 6.541 16 C -0.113 4.113 17 C -0.083 4.083 18 C -0.128 4.128 19 C -0.068 4.068 20 C -0.080 4.080 21 C -0.085 4.085 22 C -0.082 4.082 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.079 4.079 26 C 0.088 3.912 27 C 0.168 3.832 28 H 0.253 0.747 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.581 -12.680 -8.268 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.219 4.219 12 C 0.000 4.000 13 N -0.308 5.308 14 C 0.348 3.652 15 O -0.419 6.419 16 C -0.116 4.116 17 C -0.101 4.101 18 C -0.146 4.146 19 C -0.068 4.068 20 C -0.080 4.080 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.116 4.116 26 C -0.037 4.037 27 C 0.042 3.958 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.158 0.842 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.008 -12.172 -8.578 19.773 hybrid contribution 0.340 1.004 0.054 1.061 sum 13.348 -11.169 -8.524 19.380 Atomic orbital electron populations 1.70017 1.05222 1.25428 1.53960 1.24960 0.95208 0.98229 1.00667 0.86387 0.79353 0.84255 0.77424 1.21531 1.21546 1.20536 1.19076 0.92440 0.85171 1.42086 0.91945 1.43663 1.31894 1.01659 1.53934 1.20133 0.93510 0.88568 0.94360 1.22031 1.01411 1.00711 0.97785 1.20747 0.93869 0.90906 0.94463 1.47304 1.16045 1.42189 1.25232 1.18270 0.86627 0.79800 0.80526 1.90756 1.57215 1.37959 1.55934 1.19867 0.93570 1.02852 0.95304 1.21004 0.96846 0.97884 0.94398 1.20994 0.91979 1.02098 0.99563 1.19715 0.95188 0.98600 0.93301 1.19535 0.94147 0.99977 0.94366 1.21690 0.91105 0.97404 1.00095 1.20487 0.92619 1.01232 0.97579 1.21534 0.96980 1.00861 0.96160 1.21555 0.98305 1.00757 0.95210 1.20477 0.91053 1.00763 0.99336 1.22022 0.82797 1.00092 0.98750 1.21840 0.89008 0.95255 0.89659 0.93675 0.93642 0.94861 0.92446 0.90937 0.91654 0.91087 0.85756 0.85998 0.84182 0.90485 0.90408 0.91480 0.91647 0.91556 0.91609 0.90696 0.90884 0.92468 0.90967 0.94145 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 11.05 55.49 0.61 -25.89 16 2 C 0.01 0.23 4.90 -17.43 -0.09 0.14 16 3 Si 0.90 22.35 29.58 -169.99 -5.03 17.32 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.98 9.26 -15.06 -0.14 -7.12 16 8 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -14.27 2.55 -172.35 -0.44 -14.71 16 10 C 0.16 3.19 5.59 -5.52 -0.03 3.16 16 11 C -0.18 -2.89 5.49 -29.42 -0.16 -3.05 16 12 C 0.12 1.86 5.07 -5.91 -0.03 1.83 16 13 N -0.58 -10.77 2.46 -177.77 -0.44 -11.21 16 14 C 0.56 11.34 7.12 -12.33 -0.09 11.25 16 15 O -0.54 -12.94 16.61 5.32 0.09 -12.86 16 16 C -0.11 -1.92 4.39 -105.08 -0.46 -2.38 16 17 C -0.08 -1.20 9.79 -39.29 -0.38 -1.59 16 18 C -0.13 -1.56 9.59 -39.49 -0.38 -1.94 16 19 C -0.07 -0.81 5.75 -104.47 -0.60 -1.41 16 20 C -0.08 -1.07 5.73 -104.64 -0.60 -1.67 16 21 C -0.08 -1.35 7.52 -39.05 -0.29 -1.65 16 22 C -0.08 -0.92 5.66 -28.04 -0.16 -1.08 16 23 C -0.12 -1.04 5.98 -26.71 -0.16 -1.20 16 24 C -0.12 -1.01 5.98 -26.71 -0.16 -1.17 16 25 C -0.08 -0.70 5.66 -28.04 -0.16 -0.86 16 26 C 0.09 1.74 5.29 -4.58 -0.02 1.72 16 27 C 0.17 4.06 5.19 -1.75 -0.01 4.05 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 30 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.32 4.90 -51.93 -0.25 1.06 16 33 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.07 0.99 6.00 -51.93 -0.31 0.68 16 35 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.12 1.15 8.05 -52.49 -0.42 0.73 16 37 H 0.14 2.47 5.14 -52.49 -0.27 2.20 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.86 8.12 -51.93 -0.42 0.43 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 46 H 0.06 0.98 7.73 -51.93 -0.40 0.58 16 47 H 0.07 1.47 7.30 -51.93 -0.38 1.09 16 48 H 0.04 1.03 7.99 -51.93 -0.42 0.62 16 49 H 0.07 2.14 6.60 -51.93 -0.34 1.80 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -32.13 372.29 -11.31 -43.44 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.80 Total: 1.23 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.92 Total: -2.94 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.26 Total: -51.81 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.13 -11.31 -43.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989608545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.743 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds