Wall clock time and date at job start Tue Mar 31 2020 16:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47375 * 269.99852 * 3 2 1 5 5 H 1.48498 * 109.46780 * 29.99978 * 3 2 1 6 6 H 1.48503 * 109.46975 * 149.99634 * 3 2 1 7 7 C 1.38808 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00529 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00018 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00302 * 179.97438 * 9 7 2 11 11 C 1.53043 * 109.46448 * 155.00079 * 10 9 7 12 12 C 1.53189 * 109.31552 * 181.38744 * 11 10 9 13 13 N 1.46925 * 108.77403 * 305.36465 * 12 11 10 14 14 C 1.34777 * 120.63400 * 233.58387 * 13 12 11 15 15 O 1.21559 * 119.99270 * 5.68369 * 14 13 12 16 16 C 1.47840 * 120.00544 * 185.68517 * 14 13 12 17 17 C 1.39319 * 119.88105 * 54.20659 * 16 14 13 18 18 C 1.37948 * 119.60996 * 180.02562 * 17 16 14 19 19 C 1.38085 * 119.93057 * 0.12300 * 18 17 16 20 20 C 1.39030 * 120.85705 * 359.96027 * 19 18 17 21 21 C 1.37420 * 119.76804 * 359.82076 * 20 19 18 22 22 C 1.50611 * 122.63731 * 180.68095 * 21 20 19 23 23 C 1.52724 * 110.60314 * 342.24680 * 22 21 20 24 24 C 1.53329 * 108.37006 * 51.03029 * 23 22 21 25 25 C 1.50660 * 117.69413 * 179.75832 * 20 19 18 26 26 C 1.46927 * 118.73907 * 53.86409 * 13 12 11 27 27 C 1.53043 * 109.46064 * 275.07176 * 10 9 7 28 28 H 0.97001 * 119.99937 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00062 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.45729 * 35.02961 * 10 9 7 31 31 H 1.09002 * 109.49279 * 61.43311 * 11 10 9 32 32 H 1.09000 * 109.52169 * 301.35745 * 11 10 9 33 33 H 1.09001 * 109.58676 * 185.58235 * 12 11 10 34 34 H 1.08996 * 109.70426 * 65.22007 * 12 11 10 35 35 H 1.07998 * 120.19470 * 0.02562 * 17 16 14 36 36 H 1.07994 * 120.03718 * 180.13981 * 18 17 16 37 37 H 1.07997 * 119.57534 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.24828 * 102.53820 * 22 21 20 39 39 H 1.09002 * 109.25321 * 221.99230 * 22 21 20 40 40 H 1.09004 * 109.67975 * 291.32029 * 23 22 21 41 41 H 1.08996 * 109.68923 * 170.75083 * 23 22 21 42 42 H 1.08994 * 109.68641 * 170.48380 * 24 23 22 43 43 H 1.09005 * 109.67901 * 49.93031 * 24 23 22 44 44 H 1.09003 * 109.24930 * 41.95609 * 25 20 19 45 45 H 1.08990 * 109.22455 * 282.51642 * 25 20 19 46 46 H 1.08998 * 109.58725 * 65.91974 * 26 13 12 47 47 H 1.08999 * 109.58921 * 186.34993 * 26 13 12 48 48 H 1.08998 * 109.49699 * 298.56568 * 27 10 9 49 49 H 1.08997 * 109.49743 * 58.66474 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0022 11 6 5.4999 -2.2589 -0.6072 12 6 6.2499 -3.5944 -0.6361 13 7 6.2663 -4.1570 0.7211 14 6 7.4282 -4.5182 1.3007 15 8 8.4833 -4.2853 0.7438 16 6 7.4195 -5.1978 2.6137 17 6 6.6640 -6.3548 2.7914 18 6 6.6595 -6.9840 4.0190 19 6 7.3995 -6.4640 5.0624 20 6 8.1549 -5.3089 4.8948 21 6 8.1712 -4.6754 3.6754 22 6 8.9780 -3.4299 3.4179 23 6 9.3747 -2.7648 4.7343 24 6 10.0174 -3.8248 5.6367 25 6 8.9306 -4.8011 6.0823 26 6 4.9914 -4.3240 1.4320 27 6 4.2560 -2.9752 1.4399 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3621 0.0014 30 1 3.5651 -3.2065 -0.5875 31 1 6.0566 -1.5420 -0.0037 32 1 5.3972 -1.8772 -1.6230 33 1 7.2725 -3.4319 -0.9767 34 1 5.7450 -4.2848 -1.3117 35 1 6.0853 -6.7566 1.9729 36 1 6.0782 -7.8825 4.1638 37 1 7.3915 -6.9610 6.0212 38 1 9.8783 -3.6933 2.8627 39 1 8.3834 -2.7321 2.8282 40 1 8.4889 -2.3566 5.2209 41 1 10.0895 -1.9651 4.5408 42 1 10.4598 -3.3446 6.5095 43 1 10.7876 -4.3609 5.0822 44 1 9.3932 -5.6436 6.5964 45 1 8.2497 -4.2935 6.7653 46 1 4.3838 -5.0716 0.9220 47 1 5.1834 -4.6431 2.4565 48 1 4.8244 -2.2515 2.0242 49 1 3.2676 -3.1037 1.8811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996623201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:26 Heat of formation + Delta-G solvation = -12.256742 kcal Electronic energy + Delta-G solvation = -28590.862907 eV Core-core repulsion = 24902.904216 eV Total energy + Delta-G solvation = -3687.958691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91661 -39.33529 -37.38867 -36.30145 -34.61518 -32.92823 -32.00640 -30.91690 -30.47797 -29.89356 -28.98251 -25.40575 -24.01851 -23.49762 -23.13858 -22.76713 -21.90701 -20.36669 -19.59631 -19.10378 -17.63024 -17.08762 -16.54861 -15.95064 -15.83066 -15.28411 -14.86696 -14.81425 -14.22197 -14.12845 -14.06970 -13.96717 -13.66386 -13.47811 -13.22857 -13.09443 -12.92937 -12.70434 -12.51548 -12.14221 -12.07209 -12.00468 -11.88097 -11.59631 -11.11307 -11.07392 -11.01988 -10.90803 -10.80432 -10.58279 -10.55314 -10.26464 -9.91220 -9.78998 -9.61787 -8.99020 -8.88810 -8.76335 -8.55776 -7.31107 -5.80530 -3.16339 0.85057 1.15456 2.64945 3.01484 3.35520 3.38878 3.43500 3.53286 4.33587 4.37204 4.48799 4.56301 4.67132 4.74514 4.86051 4.90418 5.01313 5.07904 5.09361 5.14980 5.23526 5.31248 5.33758 5.37222 5.46370 5.53746 5.58142 5.59220 5.60783 5.65722 5.69060 5.77392 5.82759 5.86204 5.92135 5.98327 6.07586 6.11514 6.14230 6.18117 6.22842 6.27883 6.36224 6.41135 6.53223 6.71450 6.78422 6.91852 7.43064 7.95075 8.14702 8.38653 9.16833 9.89726 10.09524 11.37714 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003138 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.772585 B = 8919.647575 C = 9218.602281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.184 3.816 11 C -0.142 4.142 12 C 0.116 3.884 13 N -0.600 5.600 14 C 0.561 3.439 15 O -0.541 6.541 16 C -0.123 4.123 17 C -0.089 4.089 18 C -0.126 4.126 19 C -0.103 4.103 20 C -0.084 4.084 21 C -0.028 4.028 22 C -0.083 4.083 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.079 4.079 26 C 0.104 3.896 27 C -0.150 4.150 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.723 -13.462 10.800 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.181 4.181 12 C -0.006 4.006 13 N -0.332 5.332 14 C 0.349 3.651 15 O -0.420 6.420 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.144 4.144 19 C -0.121 4.121 20 C -0.084 4.084 21 C -0.029 4.029 22 C -0.120 4.120 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.116 4.116 26 C -0.019 4.019 27 C -0.190 4.190 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.997 -13.374 10.464 25.480 hybrid contribution 0.225 1.159 0.040 1.182 sum 19.221 -12.215 10.505 25.080 Atomic orbital electron populations 1.69699 1.05106 1.25860 1.57451 1.24667 0.95212 0.97204 1.01964 0.86565 0.79201 0.85029 0.77811 1.21055 1.21750 1.20382 1.19064 0.80535 0.94686 1.43119 0.89168 1.42803 1.04018 1.01978 1.90211 1.20147 0.90192 0.89402 0.92870 1.22238 0.97198 0.96465 1.02205 1.21621 1.02066 0.94789 0.82158 1.48133 1.06618 1.61664 1.16804 1.18363 0.83600 0.78305 0.84802 1.90754 1.30594 1.55664 1.64943 1.19907 1.00747 0.97945 0.93959 1.21185 0.97181 0.94522 0.97850 1.20980 1.00130 1.00409 0.92920 1.21297 0.96275 0.95511 0.99046 1.19549 0.98823 0.95508 0.94488 1.19555 0.95430 0.96275 0.91618 1.20517 0.99931 0.93681 0.97835 1.21579 1.00913 0.97792 0.95539 1.21560 0.97665 0.96889 0.99676 1.20470 0.96939 0.99213 0.94930 1.22075 0.83700 0.99066 0.97055 1.22705 1.00440 0.94706 1.01198 0.93039 0.80654 0.92482 0.91945 0.90411 0.89214 0.91228 0.85437 0.85436 0.85865 0.89558 0.90789 0.91539 0.91268 0.91369 0.91543 0.90717 0.90468 0.91252 0.89945 0.92344 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.96 27.74 -169.99 -4.71 17.24 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.75 -17.19 4.92 -53.39 -0.26 -17.45 16 10 C 0.18 3.34 2.73 -67.89 -0.19 3.16 16 11 C -0.14 -2.20 5.55 -26.61 -0.15 -2.34 16 12 C 0.12 1.59 6.44 -3.71 -0.02 1.57 16 13 N -0.60 -8.31 2.97 -173.62 -0.51 -8.83 16 14 C 0.56 8.27 6.06 -12.33 -0.07 8.19 16 15 O -0.54 -9.36 15.35 5.31 0.08 -9.28 16 16 C -0.12 -1.57 4.62 -104.83 -0.48 -2.06 16 17 C -0.09 -0.95 7.76 -39.29 -0.30 -1.26 16 18 C -0.13 -1.15 10.03 -39.74 -0.40 -1.55 16 19 C -0.10 -0.92 9.60 -39.34 -0.38 -1.30 16 20 C -0.08 -0.85 5.73 -104.65 -0.60 -1.45 16 21 C -0.03 -0.34 5.77 -104.23 -0.60 -0.94 16 22 C -0.08 -0.98 4.43 -28.07 -0.12 -1.11 16 23 C -0.12 -1.12 5.98 -26.70 -0.16 -1.28 16 24 C -0.12 -0.94 5.98 -26.70 -0.16 -1.10 16 25 C -0.08 -0.61 5.67 -28.04 -0.16 -0.77 16 26 C 0.10 1.36 5.60 -3.48 -0.02 1.35 16 27 C -0.15 -2.45 5.67 -26.38 -0.15 -2.60 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 30 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.13 1.21 7.75 -52.49 -0.41 0.81 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.81 8.05 -52.49 -0.42 0.38 16 38 H 0.09 1.09 7.97 -51.93 -0.41 0.67 16 39 H 0.07 1.00 7.32 -51.93 -0.38 0.62 16 40 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 1.01 5.37 -51.93 -0.28 0.73 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -32.42 378.44 -11.15 -43.57 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.00 Total: 7.49 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -4.22 Total: -10.28 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.00 Total: -54.44 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.42 -11.15 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996623201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.316 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds