Wall clock time and date at job start Tue Mar 31 2020 16:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99813 * 2 1 4 4 H 1.48493 * 109.47239 * 269.99661 * 3 2 1 5 5 H 1.48502 * 109.47523 * 30.00037 * 3 2 1 6 6 H 1.48509 * 109.47005 * 149.99881 * 3 2 1 7 7 C 1.38813 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00199 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99875 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00310 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.46353 * 205.00002 * 10 9 7 12 12 C 1.53195 * 109.31340 * 178.62607 * 11 10 9 13 13 N 1.46927 * 108.77399 * 54.64183 * 12 11 10 14 14 C 1.34772 * 120.63437 * 126.36476 * 13 12 11 15 15 O 1.21287 * 119.99786 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00156 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.47098 * 180.02562 * 16 14 13 18 18 C 1.38256 * 120.03040 * 270.02378 * 17 16 14 19 19 C 1.38105 * 119.93143 * 179.97438 * 18 17 16 20 20 C 1.38500 * 120.21504 * 0.02562 * 19 18 17 21 21 C 1.38216 * 119.84977 * 359.97438 * 20 19 18 22 22 C 1.38098 * 120.03298 * 90.00155 * 17 16 14 23 23 C 1.51370 * 109.75579 * 179.97438 * 21 20 19 24 24 C 1.54347 * 105.17312 * 342.81356 * 23 21 20 25 25 C 1.51680 * 130.30857 * 179.79826 * 20 19 18 26 26 C 1.46924 * 118.73485 * 306.64000 * 13 12 11 27 27 C 1.52767 * 109.01045 * 53.31200 * 26 13 12 28 28 H 0.96994 * 120.00018 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00293 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.45831 * 324.98306 * 10 9 7 31 31 H 1.09004 * 109.49609 * 58.67784 * 11 10 9 32 32 H 1.08995 * 109.53174 * 298.59959 * 11 10 9 33 33 H 1.08999 * 109.58696 * 294.85071 * 12 11 10 34 34 H 1.09003 * 109.70424 * 174.49516 * 12 11 10 35 35 H 1.08999 * 109.47064 * 60.00637 * 16 14 13 36 36 H 1.08994 * 109.47535 * 300.00251 * 16 14 13 37 37 H 1.07997 * 120.03559 * 359.95995 * 18 17 16 38 38 H 1.08004 * 119.89005 * 180.02562 * 19 18 17 39 39 H 1.08006 * 119.89193 * 0.02562 * 22 17 16 40 40 H 1.09000 * 110.30604 * 223.88581 * 23 21 20 41 41 H 1.09004 * 110.30501 * 101.73561 * 23 21 20 42 42 H 1.09002 * 110.82432 * 144.57199 * 24 23 21 43 43 H 1.09005 * 110.82182 * 267.92656 * 24 23 21 44 44 H 1.08998 * 110.25544 * 78.28804 * 25 20 19 45 45 H 1.09000 * 110.49386 * 316.03616 * 25 20 19 46 46 H 1.09003 * 109.58854 * 173.14361 * 26 13 12 47 47 H 1.08997 * 109.58971 * 293.57105 * 26 13 12 48 48 H 1.08996 * 109.56549 * 185.55451 * 27 26 13 49 49 H 1.09000 * 109.36150 * 65.49478 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.4998 -2.2584 0.6092 12 6 6.2499 -3.5938 0.6390 13 7 6.2665 -4.1572 -0.7179 14 6 7.4285 -4.5178 -1.2976 15 8 8.4739 -4.3788 -0.6984 16 6 7.4289 -5.0948 -2.6897 17 6 8.8434 -5.4125 -3.1014 18 6 9.6075 -4.4575 -3.7461 19 6 10.9036 -4.7507 -4.1220 20 6 11.4411 -5.9991 -3.8557 21 6 10.6772 -6.9537 -3.2112 22 6 9.3777 -6.6577 -2.8346 23 6 11.4834 -8.2232 -3.0386 24 6 12.6606 -8.0918 -4.0282 25 6 12.8154 -6.5619 -4.1645 26 6 4.9928 -4.3144 -1.4330 27 6 4.2561 -2.9761 -1.4375 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3621 -0.0004 30 1 3.5650 -3.2061 0.5901 31 1 5.3966 -1.8764 1.6249 32 1 6.0568 -1.5417 0.0059 33 1 5.7429 -4.2827 1.3146 34 1 7.2726 -3.4334 0.9805 35 1 7.0024 -4.3702 -3.3834 36 1 6.8328 -6.0071 -2.7051 37 1 9.1911 -3.4834 -3.9558 38 1 11.5001 -4.0041 -4.6252 39 1 8.7802 -7.4032 -2.3310 40 1 10.8761 -9.0937 -3.2866 41 1 11.8552 -8.2992 -2.0167 42 1 13.5656 -8.5372 -3.6152 43 1 12.4117 -8.5438 -4.9885 44 1 13.5458 -6.1895 -3.4462 45 1 13.1151 -6.3015 -5.1796 46 1 5.1860 -4.6269 -2.4593 47 1 4.3811 -5.0633 -0.9299 48 1 3.2677 -3.1049 -1.8785 49 1 4.8245 -2.2527 -2.0221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997286133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:58 Heat of formation + Delta-G solvation = -7.454446 kcal Electronic energy + Delta-G solvation = -27328.859888 eV Core-core repulsion = 23641.109440 eV Total energy + Delta-G solvation = -3687.750448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.58631 -39.81861 -37.58344 -36.09663 -34.63072 -32.54299 -31.95788 -31.18160 -30.45585 -29.77436 -28.04929 -26.67259 -24.82292 -23.08992 -22.78555 -22.25497 -21.06361 -20.83534 -20.06867 -18.86246 -17.59940 -17.08331 -16.44516 -16.15210 -15.72278 -15.43240 -15.03191 -14.88664 -14.80140 -14.13837 -13.83788 -13.64563 -13.41936 -13.37413 -13.29948 -13.14398 -12.97180 -12.60902 -12.47912 -12.21395 -12.00820 -11.90022 -11.88396 -11.51290 -11.39142 -11.13372 -11.07213 -11.02264 -10.92656 -10.89996 -10.57649 -10.27878 -9.91810 -9.76973 -9.62967 -8.97020 -8.87922 -8.55111 -8.52697 -7.32473 -5.81494 -3.17397 1.17037 1.28343 2.66121 3.03771 3.34629 3.38109 3.42891 3.61610 4.11713 4.28864 4.53779 4.55341 4.63321 4.66833 4.77153 4.84556 4.97923 5.00897 5.07155 5.17487 5.23987 5.31025 5.32336 5.34813 5.37183 5.39734 5.45198 5.48412 5.51267 5.56881 5.61362 5.62863 5.82400 5.83155 5.90435 5.92092 6.02950 6.07315 6.13925 6.24650 6.27441 6.35464 6.45293 6.48535 6.51825 6.77052 6.86777 6.90272 7.46871 7.93934 8.21946 8.37631 9.15741 9.88662 10.08430 11.36636 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.029864 B = 0.002130 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.361435 B =13144.213123 C =13375.920040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.142 4.142 12 C 0.117 3.883 13 N -0.608 5.608 14 C 0.516 3.484 15 O -0.540 6.540 16 C -0.102 4.102 17 C -0.061 4.061 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.102 4.102 21 C -0.098 4.098 22 C -0.092 4.092 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.081 4.081 26 C 0.106 3.894 27 C -0.152 4.152 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.084 -16.456 -8.832 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.181 4.181 12 C -0.006 4.006 13 N -0.342 5.342 14 C 0.304 3.696 15 O -0.418 6.418 16 C -0.141 4.141 17 C -0.061 4.061 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.102 4.102 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.158 4.158 25 C -0.118 4.118 26 C -0.017 4.017 27 C -0.193 4.193 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.365 -16.436 -8.483 29.800 hybrid contribution 0.244 1.458 -0.027 1.478 sum 23.609 -14.978 -8.510 29.226 Atomic orbital electron populations 1.69698 1.05094 1.25868 1.57386 1.24677 0.95231 0.97231 1.01970 0.86557 0.79221 0.85010 0.77766 1.21130 1.21740 1.20342 1.19060 0.80530 0.94675 1.43173 0.89163 1.42801 1.04018 1.01985 1.90221 1.20138 0.90214 0.89407 0.92870 1.22240 0.97169 0.96535 1.02176 1.21574 1.01892 0.94599 0.82519 1.48199 1.06669 1.62545 1.16802 1.20456 0.83264 0.78059 0.87823 1.90699 1.31119 1.54919 1.65035 1.20698 0.95328 1.03088 0.95012 1.19156 0.94760 0.93846 0.98380 1.20871 0.94034 0.98654 0.98623 1.20544 0.95245 0.95728 1.00918 1.20613 0.96073 0.94145 0.99369 1.20475 0.93910 0.96467 0.98987 1.20391 0.94416 0.96420 0.99776 1.21038 0.95626 0.95103 1.00110 1.22294 0.98252 0.95649 0.99605 1.21098 0.93862 0.94977 1.01909 1.21795 0.84134 0.99189 0.96561 1.22567 1.00545 0.94906 1.01309 0.93039 0.80651 0.92515 0.90539 0.92006 0.91468 0.89375 0.87796 0.87989 0.86015 0.86352 0.86509 0.90811 0.90290 0.90667 0.91010 0.90351 0.90841 0.90300 0.91202 0.90046 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.24 -6.65 10.41 -15.06 -0.16 -6.80 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 N -0.75 -16.99 4.92 -53.39 -0.26 -17.26 16 10 C 0.18 3.28 2.73 -67.89 -0.19 3.09 16 11 C -0.14 -2.19 5.55 -26.61 -0.15 -2.33 16 12 C 0.12 1.60 6.44 -3.71 -0.02 1.57 16 13 N -0.61 -7.96 2.98 -173.03 -0.52 -8.47 16 14 C 0.52 7.03 7.69 -10.99 -0.08 6.95 16 15 O -0.54 -9.30 15.45 5.55 0.09 -9.22 16 16 C -0.10 -1.04 4.18 -29.04 -0.12 -1.16 16 17 C -0.06 -0.70 4.37 -104.67 -0.46 -1.16 16 18 C -0.10 -1.18 9.70 -39.62 -0.38 -1.56 16 19 C -0.11 -1.13 10.04 -39.53 -0.40 -1.52 16 20 C -0.10 -1.05 6.15 -104.05 -0.64 -1.69 16 21 C -0.10 -1.04 6.14 -104.21 -0.64 -1.68 16 22 C -0.09 -1.03 9.69 -39.54 -0.38 -1.41 16 23 C -0.08 -0.64 6.77 -26.85 -0.18 -0.82 16 24 C -0.12 -0.77 7.07 -25.30 -0.18 -0.94 16 25 C -0.08 -0.61 6.80 -26.68 -0.18 -0.79 16 26 C 0.11 1.25 6.31 -3.93 -0.02 1.22 16 27 C -0.15 -2.34 5.64 -26.83 -0.15 -2.49 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 30 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 35 H 0.10 0.91 7.62 -51.93 -0.40 0.52 16 36 H 0.10 0.82 7.90 -51.93 -0.41 0.41 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.73 5.94 -51.93 -0.31 0.42 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -33.42 387.42 -11.29 -44.71 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.06 Total: 6.73 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -4.44 Total: -11.49 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.00 Total: -53.71 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.42 -11.29 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997286133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.258 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds