Wall clock time and date at job start Tue Mar 31 2020 16:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99813 * 2 1 4 4 H 1.48493 * 109.47239 * 269.99661 * 3 2 1 5 5 H 1.48502 * 109.47523 * 30.00037 * 3 2 1 6 6 H 1.48509 * 109.47005 * 149.99881 * 3 2 1 7 7 C 1.38813 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00199 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99875 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00310 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.46353 * 205.00002 * 10 9 7 12 12 C 1.53195 * 109.31340 * 178.62607 * 11 10 9 13 13 N 1.46927 * 108.77399 * 54.64183 * 12 11 10 14 14 C 1.34772 * 120.63437 * 126.36476 * 13 12 11 15 15 O 1.21287 * 119.99786 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00156 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.47098 * 180.02562 * 16 14 13 18 18 C 1.38256 * 120.03040 * 270.02378 * 17 16 14 19 19 C 1.38105 * 119.93143 * 179.97438 * 18 17 16 20 20 C 1.38500 * 120.21504 * 0.02562 * 19 18 17 21 21 C 1.38216 * 119.84977 * 359.97438 * 20 19 18 22 22 C 1.38098 * 120.03298 * 90.00155 * 17 16 14 23 23 C 1.51370 * 109.75579 * 179.97438 * 21 20 19 24 24 C 1.54347 * 105.17312 * 342.81356 * 23 21 20 25 25 C 1.51680 * 130.30857 * 179.79826 * 20 19 18 26 26 C 1.46924 * 118.73485 * 306.64000 * 13 12 11 27 27 C 1.52767 * 109.01045 * 53.31200 * 26 13 12 28 28 H 0.96994 * 120.00018 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00293 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.45831 * 324.98306 * 10 9 7 31 31 H 1.09004 * 109.49609 * 58.67784 * 11 10 9 32 32 H 1.08995 * 109.53174 * 298.59959 * 11 10 9 33 33 H 1.08999 * 109.58696 * 294.85071 * 12 11 10 34 34 H 1.09003 * 109.70424 * 174.49516 * 12 11 10 35 35 H 1.08999 * 109.47064 * 60.00637 * 16 14 13 36 36 H 1.08994 * 109.47535 * 300.00251 * 16 14 13 37 37 H 1.07997 * 120.03559 * 359.95995 * 18 17 16 38 38 H 1.08004 * 119.89005 * 180.02562 * 19 18 17 39 39 H 1.08006 * 119.89193 * 0.02562 * 22 17 16 40 40 H 1.09000 * 110.30604 * 223.88581 * 23 21 20 41 41 H 1.09004 * 110.30501 * 101.73561 * 23 21 20 42 42 H 1.09002 * 110.82432 * 144.57199 * 24 23 21 43 43 H 1.09005 * 110.82182 * 267.92656 * 24 23 21 44 44 H 1.08998 * 110.25544 * 78.28804 * 25 20 19 45 45 H 1.09000 * 110.49386 * 316.03616 * 25 20 19 46 46 H 1.09003 * 109.58854 * 173.14361 * 26 13 12 47 47 H 1.08997 * 109.58971 * 293.57105 * 26 13 12 48 48 H 1.08996 * 109.56549 * 185.55451 * 27 26 13 49 49 H 1.09000 * 109.36150 * 65.49478 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.4998 -2.2584 0.6092 12 6 6.2499 -3.5938 0.6390 13 7 6.2665 -4.1572 -0.7179 14 6 7.4285 -4.5178 -1.2976 15 8 8.4739 -4.3788 -0.6984 16 6 7.4289 -5.0948 -2.6897 17 6 8.8434 -5.4125 -3.1014 18 6 9.6075 -4.4575 -3.7461 19 6 10.9036 -4.7507 -4.1220 20 6 11.4411 -5.9991 -3.8557 21 6 10.6772 -6.9537 -3.2112 22 6 9.3777 -6.6577 -2.8346 23 6 11.4834 -8.2232 -3.0386 24 6 12.6606 -8.0918 -4.0282 25 6 12.8154 -6.5619 -4.1645 26 6 4.9928 -4.3144 -1.4330 27 6 4.2561 -2.9761 -1.4375 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3621 -0.0004 30 1 3.5650 -3.2061 0.5901 31 1 5.3966 -1.8764 1.6249 32 1 6.0568 -1.5417 0.0059 33 1 5.7429 -4.2827 1.3146 34 1 7.2726 -3.4334 0.9805 35 1 7.0024 -4.3702 -3.3834 36 1 6.8328 -6.0071 -2.7051 37 1 9.1911 -3.4834 -3.9558 38 1 11.5001 -4.0041 -4.6252 39 1 8.7802 -7.4032 -2.3310 40 1 10.8761 -9.0937 -3.2866 41 1 11.8552 -8.2992 -2.0167 42 1 13.5656 -8.5372 -3.6152 43 1 12.4117 -8.5438 -4.9885 44 1 13.5458 -6.1895 -3.4462 45 1 13.1151 -6.3015 -5.1796 46 1 5.1860 -4.6269 -2.4593 47 1 4.3811 -5.0633 -0.9299 48 1 3.2677 -3.1049 -1.8785 49 1 4.8245 -2.2527 -2.0221 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997286133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:57 Heat of formation + Delta-G solvation = -25.774870 kcal Electronic energy + Delta-G solvation = -27329.654321 eV Core-core repulsion = 23641.109440 eV Total energy + Delta-G solvation = -3688.544881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49034 -40.71723 -38.83679 -36.84660 -36.21400 -34.00242 -33.16291 -32.22207 -31.56613 -31.14026 -28.75642 -27.51799 -26.28099 -24.28496 -23.98387 -23.38528 -21.99634 -21.66297 -21.14700 -20.07680 -19.36980 -18.21742 -17.22218 -16.96491 -16.71701 -16.54113 -16.26922 -15.90474 -15.87779 -15.61069 -15.05683 -14.97403 -14.75030 -14.36203 -14.25982 -14.12541 -13.95532 -13.71112 -13.47901 -13.31478 -13.25292 -12.94933 -12.89193 -12.63078 -12.51621 -12.22921 -12.07259 -12.06836 -12.02538 -12.01085 -11.78827 -11.70727 -11.60170 -11.33520 -11.00474 -10.79687 -9.67441 -9.65629 -9.30752 -9.27698 -8.01294 -5.34014 0.38793 0.49913 1.38017 1.39557 1.47037 1.63049 2.03224 2.48474 2.81473 3.30185 3.46390 3.52135 3.65127 3.68774 3.79050 3.96624 4.06313 4.10560 4.15600 4.18192 4.18931 4.32315 4.34005 4.40281 4.51527 4.57345 4.60188 4.62342 4.74001 4.76806 4.81257 4.82490 4.84484 4.92921 4.95252 5.01778 5.06257 5.08786 5.23043 5.28046 5.29892 5.35798 5.47912 5.51520 5.62639 5.66280 5.73215 5.79103 6.12128 6.22970 6.43759 7.08757 7.17852 7.85725 8.03657 9.19948 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.029864 B = 0.002130 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.361435 B =13144.213123 C =13375.920040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.256 1.256 7 C -0.223 4.223 8 H 0.062 0.938 9 N -0.753 5.753 10 C 0.175 3.825 11 C -0.131 4.131 12 C 0.121 3.879 13 N -0.608 5.608 14 C 0.515 3.485 15 O -0.580 6.580 16 C -0.096 4.096 17 C -0.076 4.076 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.083 4.083 24 C -0.115 4.115 25 C -0.082 4.082 26 C 0.114 3.886 27 C -0.144 4.144 28 H 0.256 0.744 29 H 0.362 0.638 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.321 -17.585 -9.750 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.180 1.180 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.396 5.396 10 C 0.067 3.933 11 C -0.170 4.170 12 C -0.002 4.002 13 N -0.341 5.341 14 C 0.305 3.695 15 O -0.461 6.461 16 C -0.135 4.135 17 C -0.077 4.077 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.153 4.153 25 C -0.119 4.119 26 C -0.009 4.009 27 C -0.184 4.184 28 H 0.065 0.935 29 H 0.195 0.805 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.131 0.869 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 25.647 -17.607 -9.413 32.502 hybrid contribution -0.424 1.709 0.276 1.783 sum 25.223 -15.898 -9.137 31.184 Atomic orbital electron populations 1.69868 1.06974 1.26470 1.60058 1.25441 0.96035 1.00984 1.03147 0.85475 0.78563 0.80209 0.77898 1.20706 1.22562 1.18035 1.19031 0.82465 0.93419 1.40446 0.91954 1.42857 1.02529 1.03927 1.90273 1.20413 0.90913 0.87272 0.94710 1.22097 0.95496 0.97578 1.01779 1.21478 1.01298 0.93928 0.83470 1.48261 1.07122 1.62181 1.16523 1.21017 0.82504 0.77255 0.88695 1.90683 1.32500 1.56612 1.66254 1.20748 0.95372 1.04489 0.92887 1.19354 0.95492 0.94085 0.98728 1.21095 0.94616 0.99066 0.99203 1.20826 0.95394 0.96472 1.01093 1.21039 0.97442 0.94055 0.99021 1.20902 0.94021 0.97773 0.98655 1.20645 0.95096 0.96760 1.00146 1.21122 0.95982 0.94265 1.00646 1.22319 0.98381 0.94867 0.99685 1.21182 0.92370 0.95704 1.02652 1.21836 0.83242 0.97114 0.98695 1.22368 1.00295 0.96963 0.98821 0.93493 0.80491 0.93248 0.90569 0.92437 0.90118 0.89992 0.86006 0.85354 0.85496 0.84984 0.85636 0.89782 0.90189 0.88919 0.90303 0.89998 0.89690 0.86899 0.89828 0.91606 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.08 13.97 21.65 0.30 -61.78 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.95 45.25 27.73 68.60 1.90 47.15 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 7 C -0.22 -12.20 10.41 84.03 0.87 -11.33 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -33.65 4.92 -322.82 -1.59 -35.24 16 10 C 0.17 6.05 2.73 45.02 0.12 6.17 16 11 C -0.13 -3.82 5.55 30.67 0.17 -3.65 16 12 C 0.12 3.11 6.44 86.36 0.56 3.66 16 13 N -0.61 -14.46 2.98 -819.72 -2.44 -16.90 16 14 C 0.52 13.02 7.69 87.66 0.67 13.69 16 15 O -0.58 -19.45 15.45 -3.05 -0.05 -19.50 16 16 C -0.10 -1.72 4.18 29.10 0.12 -1.60 16 17 C -0.08 -1.65 4.37 -19.89 -0.09 -1.74 16 18 C -0.12 -2.66 9.70 22.24 0.22 -2.44 16 19 C -0.12 -2.45 10.04 22.30 0.22 -2.23 16 20 C -0.12 -2.26 6.15 -19.49 -0.12 -2.38 16 21 C -0.11 -2.26 6.14 -19.60 -0.12 -2.38 16 22 C -0.11 -2.30 9.69 22.30 0.22 -2.09 16 23 C -0.08 -1.15 6.77 30.52 0.21 -0.94 16 24 C -0.12 -1.20 7.07 31.52 0.22 -0.97 16 25 C -0.08 -1.09 6.80 30.63 0.21 -0.88 16 26 C 0.11 2.33 6.31 86.22 0.54 2.87 16 27 C -0.14 -4.18 5.64 30.53 0.17 -4.01 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 29 H 0.36 15.92 5.66 -92.71 -0.52 15.39 16 30 H 0.05 1.79 8.08 -2.38 -0.02 1.77 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.26 7.00 -2.39 -0.02 2.24 16 35 H 0.12 1.75 7.62 -2.39 -0.02 1.73 16 36 H 0.13 1.61 7.90 -2.39 -0.02 1.59 16 37 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.11 1.61 5.94 -2.39 -0.01 1.60 16 47 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -73.65 387.42 3.15 -70.50 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.35 Total: 29.27 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.67 Total: -13.51 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -3.73 Total: -113.92 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Total: -73.65 3.15 -70.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997286133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.726 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds