Wall clock time and date at job start Tue Mar 31 2020 16:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47454 * 270.00366 * 3 2 1 5 5 H 1.48505 * 109.47290 * 30.00249 * 3 2 1 6 6 H 1.48496 * 109.47145 * 150.00320 * 3 2 1 7 7 C 1.38805 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99936 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49678 * 35.00529 * 10 9 7 12 12 C 1.53046 * 109.52287 * 155.08217 * 10 9 7 13 13 C 1.53037 * 109.53853 * 181.33197 * 12 10 9 14 14 C 1.53190 * 109.31496 * 298.63905 * 13 12 10 15 15 N 1.46924 * 108.77598 * 54.63250 * 14 13 12 16 16 C 1.34771 * 120.62801 * 126.37198 * 15 14 13 17 17 O 1.21559 * 119.99869 * 175.80328 * 16 15 14 18 18 C 1.47849 * 120.00382 * 355.80957 * 16 15 14 19 19 C 1.39321 * 119.87981 * 54.97701 * 18 16 15 20 20 C 1.37946 * 119.60490 * 179.75454 * 19 18 16 21 21 C 1.38082 * 119.93307 * 0.66925 * 20 19 18 22 22 C 1.39025 * 120.85602 * 359.69599 * 21 20 19 23 23 C 1.37428 * 119.77121 * 359.78610 * 22 21 20 24 24 C 1.50603 * 122.63486 * 180.75201 * 23 22 21 25 25 C 1.52741 * 110.61075 * 342.22250 * 24 23 22 26 26 C 1.53334 * 108.37429 * 51.00366 * 25 24 23 27 27 C 1.50656 * 117.69038 * 179.68780 * 22 21 20 28 28 C 1.46920 * 118.73880 * 306.39059 * 15 14 13 29 29 H 0.97002 * 120.00659 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99835 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.45921 * 301.35449 * 12 10 9 32 32 H 1.09000 * 109.45723 * 61.31312 * 12 10 9 33 33 H 1.09000 * 109.49627 * 178.68182 * 13 12 10 34 34 H 1.09004 * 109.52349 * 58.60542 * 13 12 10 35 35 H 1.09007 * 109.58492 * 294.84330 * 14 13 12 36 36 H 1.08998 * 109.58868 * 174.42435 * 14 13 12 37 37 H 1.08000 * 120.19679 * 0.02562 * 19 18 16 38 38 H 1.08005 * 120.02952 * 180.39175 * 20 19 18 39 39 H 1.08000 * 119.57281 * 179.71704 * 21 20 19 40 40 H 1.09004 * 109.24986 * 102.51244 * 24 23 22 41 41 H 1.08994 * 109.25162 * 221.92801 * 24 23 22 42 42 H 1.08989 * 109.68770 * 291.27878 * 25 24 23 43 43 H 1.08999 * 109.71064 * 170.73949 * 25 24 23 44 44 H 1.08996 * 109.68142 * 170.49965 * 26 25 24 45 45 H 1.09002 * 109.68510 * 49.93539 * 26 25 24 46 46 H 1.08998 * 109.25168 * 282.43978 * 27 22 21 47 47 H 1.09000 * 109.25425 * 41.90873 * 27 22 21 48 48 H 1.08997 * 109.59159 * 293.82374 * 28 15 14 49 49 H 1.09000 * 109.58714 * 173.39858 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9693 -3.5512 0.5871 12 6 1.1814 -4.7540 0.6063 13 6 1.9583 -6.0722 0.6357 14 6 2.3194 -6.4796 -0.7962 15 7 3.0382 -5.3697 -1.4366 16 6 4.2417 -5.5705 -2.0090 17 8 4.7918 -4.6630 -2.6019 18 6 4.8930 -6.8946 -1.9160 19 6 4.2150 -8.0333 -2.3457 20 6 4.8300 -9.2652 -2.2610 21 6 6.1047 -9.3646 -1.7397 22 6 6.7859 -8.2347 -1.3013 23 6 6.1883 -7.0003 -1.3902 24 6 6.8728 -5.7330 -0.9504 25 6 8.0523 -6.0495 -0.0329 26 6 8.9306 -7.1017 -0.7204 27 6 8.1702 -8.4261 -0.7385 28 6 2.4203 -4.0368 -1.4408 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 0.9019 -4.4745 1.6220 32 1 0.2819 -4.8761 0.0029 33 1 1.3418 -6.8478 1.0902 34 1 2.8705 -5.9445 1.2186 35 1 1.4090 -6.6963 -1.3551 36 1 2.9566 -7.3638 -0.7749 37 1 3.2156 -7.9515 -2.7468 38 1 4.3131 -10.1516 -2.5981 39 1 6.5789 -10.3325 -1.6719 40 1 7.2340 -5.1965 -1.8278 41 1 6.1594 -5.1063 -0.4153 42 1 7.6849 -6.4409 0.9156 43 1 8.6337 -5.1447 0.1438 44 1 9.8620 -7.2207 -0.1670 45 1 9.1471 -6.7887 -1.7418 46 1 8.0946 -8.8111 0.2784 47 1 8.7128 -9.1430 -1.3548 48 1 1.5181 -4.0541 -2.0522 49 1 3.1240 -3.3091 -1.8448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999233364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:50 Heat of formation + Delta-G solvation = -14.220390 kcal Electronic energy + Delta-G solvation = -28716.554745 eV Core-core repulsion = 25028.510904 eV Total energy + Delta-G solvation = -3688.043841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82779 -39.20336 -37.20159 -36.26283 -34.44317 -32.78666 -32.18293 -31.15900 -30.46652 -29.36053 -28.05123 -25.54314 -24.01116 -23.90027 -22.93679 -22.82000 -21.84982 -20.19856 -19.54289 -18.89886 -17.09070 -17.05083 -16.45686 -15.90495 -15.65447 -15.23625 -14.97949 -14.47579 -14.16912 -14.12628 -13.99518 -13.92307 -13.62849 -13.37503 -13.29919 -13.03064 -12.71126 -12.63786 -12.37727 -12.32701 -11.99782 -11.96150 -11.65423 -11.28954 -11.05253 -11.01180 -10.83454 -10.73960 -10.63357 -10.56916 -10.48673 -10.20278 -9.83138 -9.75222 -9.55804 -9.06705 -8.84150 -8.71752 -8.32261 -6.99835 -5.78508 -3.08351 0.91194 1.18169 2.82809 3.19248 3.45461 3.50808 3.52159 3.59112 4.39620 4.44374 4.55671 4.58959 4.72836 4.77303 4.89946 4.95287 4.97605 5.10645 5.10884 5.20168 5.28802 5.35846 5.43132 5.48496 5.56320 5.57088 5.64827 5.65181 5.71434 5.74902 5.81081 5.83454 5.92715 5.94598 6.04507 6.05936 6.17607 6.18513 6.21320 6.22683 6.28277 6.36065 6.45795 6.50982 6.72579 6.77151 6.83340 7.01553 7.66181 7.71722 8.36778 8.40617 9.51495 10.05437 10.40803 11.43770 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.003327 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.466075 B = 8414.533859 C = 9491.778428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.099 3.901 15 N -0.598 5.598 16 C 0.554 3.446 17 O -0.534 6.534 18 C -0.119 4.119 19 C -0.094 4.094 20 C -0.128 4.128 21 C -0.106 4.106 22 C -0.083 4.083 23 C -0.027 4.027 24 C -0.085 4.085 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.078 4.078 28 C 0.092 3.908 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.996 -23.365 -0.634 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.024 4.024 15 N -0.331 5.331 16 C 0.342 3.658 17 O -0.411 6.411 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.146 4.146 21 C -0.124 4.124 22 C -0.084 4.084 23 C -0.028 4.028 24 C -0.122 4.122 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.115 4.115 28 C -0.032 4.032 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.374 -22.677 -0.924 25.850 hybrid contribution -0.150 0.844 -0.151 0.870 sum 12.224 -21.833 -1.075 25.045 Atomic orbital electron populations 1.69659 1.05123 1.25768 1.57482 1.24738 0.95509 0.97740 1.02652 0.86193 0.78705 0.83704 0.77639 1.21586 1.21761 1.20669 1.19265 0.91089 0.83978 1.43018 0.91067 1.42377 1.05803 0.99567 1.88098 1.20482 0.94908 0.86462 0.92356 0.93193 1.21827 0.98682 0.94129 1.01803 1.21874 1.00841 0.98151 0.95920 1.21957 0.96895 0.89663 0.93853 1.48231 1.18463 1.11178 1.55231 1.18365 0.80891 0.87495 0.79086 1.90793 1.64045 1.43955 1.42297 1.20027 0.95244 0.93642 1.03256 1.21197 0.99564 0.91690 0.98784 1.20958 0.95455 0.97332 1.00838 1.21265 0.94894 0.98013 0.98240 1.19548 0.96532 0.92120 1.00155 1.19572 0.92128 0.94872 0.96192 1.20541 0.97292 0.94058 1.00333 1.21570 0.96413 0.99186 0.98532 1.21569 0.98099 0.94770 1.01423 1.20462 0.91734 0.98304 1.00961 1.22817 0.97842 0.81424 1.01106 0.93460 0.78060 0.91412 0.92034 0.91050 0.91665 0.91425 0.89565 0.85460 0.85573 0.85969 0.89424 0.90543 0.91661 0.91179 0.91406 0.91493 0.90574 0.90784 0.91983 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.91 5.13 -53.31 -0.27 -18.18 16 10 C 0.17 3.38 2.92 -67.81 -0.20 3.18 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -2.00 5.36 -26.69 -0.14 -2.14 16 13 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 14 C 0.10 1.22 5.55 -3.71 -0.02 1.19 16 15 N -0.60 -9.56 2.97 -173.89 -0.52 -10.07 16 16 C 0.55 9.36 6.06 -12.33 -0.07 9.29 16 17 O -0.53 -11.02 15.44 5.31 0.08 -10.94 16 18 C -0.12 -1.62 4.87 -104.83 -0.51 -2.13 16 19 C -0.09 -1.03 7.43 -39.29 -0.29 -1.32 16 20 C -0.13 -1.15 10.03 -39.75 -0.40 -1.55 16 21 C -0.11 -0.94 9.60 -39.35 -0.38 -1.32 16 22 C -0.08 -0.86 5.73 -104.65 -0.60 -1.46 16 23 C -0.03 -0.34 5.77 -104.23 -0.60 -0.94 16 24 C -0.09 -1.11 4.46 -28.06 -0.13 -1.24 16 25 C -0.12 -1.19 5.98 -26.69 -0.16 -1.35 16 26 C -0.12 -1.00 5.98 -26.70 -0.16 -1.16 16 27 C -0.08 -0.61 5.67 -28.04 -0.16 -0.77 16 28 C 0.09 1.78 6.00 -3.71 -0.02 1.76 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.39 10.10 7.80 -40.82 -0.32 9.78 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.92 4.77 -51.93 -0.25 0.68 16 37 H 0.13 1.24 7.42 -52.49 -0.39 0.86 16 38 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 39 H 0.12 0.78 8.05 -52.49 -0.42 0.36 16 40 H 0.09 1.25 7.99 -51.93 -0.41 0.83 16 41 H 0.08 1.14 7.33 -51.93 -0.38 0.76 16 42 H 0.06 0.63 8.10 -51.94 -0.42 0.21 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.09 2.04 7.03 -51.93 -0.36 1.67 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -32.39 380.65 -11.51 -43.91 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.99 Total: 8.26 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.25 Total: -9.06 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.07 Total: -55.63 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.39 -11.51 -43.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999233364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.686 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds