Wall clock time and date at job start Tue Mar 31 2020 16:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47454 * 270.00366 * 3 2 1 5 5 H 1.48505 * 109.47290 * 30.00249 * 3 2 1 6 6 H 1.48496 * 109.47145 * 150.00320 * 3 2 1 7 7 C 1.38805 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99936 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49678 * 35.00529 * 10 9 7 12 12 C 1.53046 * 109.52287 * 155.08217 * 10 9 7 13 13 C 1.53037 * 109.53853 * 181.33197 * 12 10 9 14 14 C 1.53190 * 109.31496 * 298.63905 * 13 12 10 15 15 N 1.46924 * 108.77598 * 54.63250 * 14 13 12 16 16 C 1.34771 * 120.62801 * 126.37198 * 15 14 13 17 17 O 1.21559 * 119.99869 * 175.80328 * 16 15 14 18 18 C 1.47849 * 120.00382 * 355.80957 * 16 15 14 19 19 C 1.39321 * 119.87981 * 54.97701 * 18 16 15 20 20 C 1.37946 * 119.60490 * 179.75454 * 19 18 16 21 21 C 1.38082 * 119.93307 * 0.66925 * 20 19 18 22 22 C 1.39025 * 120.85602 * 359.69599 * 21 20 19 23 23 C 1.37428 * 119.77121 * 359.78610 * 22 21 20 24 24 C 1.50603 * 122.63486 * 180.75201 * 23 22 21 25 25 C 1.52741 * 110.61075 * 342.22250 * 24 23 22 26 26 C 1.53334 * 108.37429 * 51.00366 * 25 24 23 27 27 C 1.50656 * 117.69038 * 179.68780 * 22 21 20 28 28 C 1.46920 * 118.73880 * 306.39059 * 15 14 13 29 29 H 0.97002 * 120.00659 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99835 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.45921 * 301.35449 * 12 10 9 32 32 H 1.09000 * 109.45723 * 61.31312 * 12 10 9 33 33 H 1.09000 * 109.49627 * 178.68182 * 13 12 10 34 34 H 1.09004 * 109.52349 * 58.60542 * 13 12 10 35 35 H 1.09007 * 109.58492 * 294.84330 * 14 13 12 36 36 H 1.08998 * 109.58868 * 174.42435 * 14 13 12 37 37 H 1.08000 * 120.19679 * 0.02562 * 19 18 16 38 38 H 1.08005 * 120.02952 * 180.39175 * 20 19 18 39 39 H 1.08000 * 119.57281 * 179.71704 * 21 20 19 40 40 H 1.09004 * 109.24986 * 102.51244 * 24 23 22 41 41 H 1.08994 * 109.25162 * 221.92801 * 24 23 22 42 42 H 1.08989 * 109.68770 * 291.27878 * 25 24 23 43 43 H 1.08999 * 109.71064 * 170.73949 * 25 24 23 44 44 H 1.08996 * 109.68142 * 170.49965 * 26 25 24 45 45 H 1.09002 * 109.68510 * 49.93539 * 26 25 24 46 46 H 1.08998 * 109.25168 * 282.43978 * 27 22 21 47 47 H 1.09000 * 109.25425 * 41.90873 * 27 22 21 48 48 H 1.08997 * 109.59159 * 293.82374 * 28 15 14 49 49 H 1.09000 * 109.58714 * 173.39858 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9693 -3.5512 0.5871 12 6 1.1814 -4.7540 0.6063 13 6 1.9583 -6.0722 0.6357 14 6 2.3194 -6.4796 -0.7962 15 7 3.0382 -5.3697 -1.4366 16 6 4.2417 -5.5705 -2.0090 17 8 4.7918 -4.6630 -2.6019 18 6 4.8930 -6.8946 -1.9160 19 6 4.2150 -8.0333 -2.3457 20 6 4.8300 -9.2652 -2.2610 21 6 6.1047 -9.3646 -1.7397 22 6 6.7859 -8.2347 -1.3013 23 6 6.1883 -7.0003 -1.3902 24 6 6.8728 -5.7330 -0.9504 25 6 8.0523 -6.0495 -0.0329 26 6 8.9306 -7.1017 -0.7204 27 6 8.1702 -8.4261 -0.7385 28 6 2.4203 -4.0368 -1.4408 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 0.9019 -4.4745 1.6220 32 1 0.2819 -4.8761 0.0029 33 1 1.3418 -6.8478 1.0902 34 1 2.8705 -5.9445 1.2186 35 1 1.4090 -6.6963 -1.3551 36 1 2.9566 -7.3638 -0.7749 37 1 3.2156 -7.9515 -2.7468 38 1 4.3131 -10.1516 -2.5981 39 1 6.5789 -10.3325 -1.6719 40 1 7.2340 -5.1965 -1.8278 41 1 6.1594 -5.1063 -0.4153 42 1 7.6849 -6.4409 0.9156 43 1 8.6337 -5.1447 0.1438 44 1 9.8620 -7.2207 -0.1670 45 1 9.1471 -6.7887 -1.7418 46 1 8.0946 -8.8111 0.2784 47 1 8.7128 -9.1430 -1.3548 48 1 1.5181 -4.0541 -2.0522 49 1 3.1240 -3.3091 -1.8448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999233364.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:49 Heat of formation + Delta-G solvation = -32.795907 kcal Electronic energy + Delta-G solvation = -28717.360240 eV Core-core repulsion = 25028.510904 eV Total energy + Delta-G solvation = -3688.849336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89261 -40.30694 -38.64407 -37.08917 -36.19104 -34.08453 -33.42094 -32.78439 -31.26372 -30.51763 -29.51109 -26.81197 -25.92544 -24.72600 -23.95700 -23.70197 -23.24192 -21.62132 -20.33477 -20.15449 -19.17169 -18.22552 -17.51128 -16.89738 -16.81149 -16.64924 -16.07055 -15.89356 -15.59315 -15.48356 -15.10772 -15.04768 -14.81029 -14.66929 -14.43772 -14.05682 -13.94863 -13.85199 -13.65131 -13.41640 -13.15281 -12.94452 -12.81340 -12.78473 -12.52746 -12.45310 -12.23111 -12.00286 -11.94924 -11.81203 -11.71723 -11.54069 -11.39564 -11.24767 -11.14974 -10.85147 -9.85638 -9.66259 -9.51008 -9.06012 -8.01863 -5.31444 0.03942 0.38928 1.41421 1.43663 1.51642 1.57441 1.96220 2.50612 2.72704 3.30975 3.41367 3.66069 3.70722 3.72510 3.95171 3.96402 4.01210 4.05374 4.14167 4.16525 4.23814 4.28884 4.32626 4.39148 4.47809 4.55695 4.57330 4.63992 4.70156 4.81071 4.84718 4.85494 4.87088 4.92418 5.00588 5.03092 5.07657 5.08634 5.14009 5.28813 5.33344 5.39051 5.40272 5.40968 5.43387 5.51106 5.53508 5.66306 5.99872 6.20742 6.37824 7.06076 7.27487 7.98629 8.24928 9.20732 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.003327 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.466075 B = 8414.533859 C = 9491.778428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.968 3.032 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.028 0.972 12 C -0.117 4.117 13 C -0.120 4.120 14 C 0.096 3.904 15 N -0.597 5.597 16 C 0.550 3.450 17 O -0.588 6.588 18 C -0.143 4.143 19 C -0.097 4.097 20 C -0.117 4.117 21 C -0.097 4.097 22 C -0.086 4.086 23 C -0.050 4.050 24 C -0.081 4.081 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.076 4.076 28 C 0.108 3.892 29 H 0.254 0.746 30 H 0.378 0.622 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.061 0.939 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 -27.865 -0.076 30.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.081 0.919 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.046 0.954 12 C -0.155 4.155 13 C -0.158 4.158 14 C -0.025 4.025 15 N -0.329 5.329 16 C 0.339 3.661 17 O -0.469 6.469 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.135 4.135 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.051 4.051 24 C -0.118 4.118 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.113 4.113 28 C -0.018 4.018 29 H 0.063 0.937 30 H 0.211 0.789 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.156 0.844 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.259 -27.242 -0.347 30.299 hybrid contribution -0.377 2.150 -0.350 2.211 sum 12.882 -25.092 -0.698 28.214 Atomic orbital electron populations 1.69784 1.06289 1.26255 1.58919 1.25473 0.96405 1.00754 1.03209 0.85238 0.77800 0.79881 0.77452 1.21591 1.21316 1.19882 1.19493 0.90970 0.85513 1.41959 0.91895 1.42491 1.05531 1.00511 1.88292 1.20616 0.94598 0.86217 0.92628 0.95373 1.21734 0.98463 0.94263 1.01070 1.21860 1.00658 0.97040 0.96264 1.22291 0.97789 0.88851 0.93565 1.48259 1.18611 1.10695 1.55307 1.19062 0.80565 0.88560 0.77875 1.90749 1.65279 1.46168 1.44702 1.19853 0.96122 0.92361 1.06264 1.21375 1.00114 0.91540 0.98488 1.21375 0.95472 0.97408 0.99232 1.21724 0.94683 0.98864 0.96158 1.19883 0.97735 0.91369 0.99587 1.19629 0.92168 0.95572 0.97739 1.20408 0.97776 0.94212 0.99450 1.21566 0.95507 1.00103 0.98202 1.21569 0.98688 0.94474 1.00850 1.20559 0.90283 0.98231 1.02234 1.22256 0.96651 0.82842 1.00049 0.93729 0.78896 0.91834 0.91187 0.86922 0.92396 0.89243 0.87184 0.84374 0.81987 0.82303 0.92236 0.94152 0.91027 0.91338 0.89111 0.92552 0.88892 0.88400 0.92112 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.60 13.06 21.65 0.28 -59.32 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.97 48.16 29.55 68.60 2.03 50.19 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.25 -14.51 9.93 84.03 0.83 -13.67 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -38.07 5.13 -322.57 -1.65 -39.72 16 10 C 0.17 7.11 2.92 45.07 0.13 7.25 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.28 16 12 C -0.12 -3.67 5.36 30.62 0.16 -3.50 16 13 C -0.12 -2.73 6.08 30.67 0.19 -2.54 16 14 C 0.10 2.17 5.55 86.36 0.48 2.65 16 15 N -0.60 -19.74 2.97 -822.33 -2.44 -22.19 16 16 C 0.55 19.74 6.06 86.79 0.53 20.26 16 17 O -0.59 -26.77 15.44 -3.90 -0.06 -26.83 16 18 C -0.14 -3.91 4.87 -20.00 -0.10 -4.00 16 19 C -0.10 -1.87 7.43 22.46 0.17 -1.71 16 20 C -0.12 -1.55 10.03 22.16 0.22 -1.33 16 21 C -0.10 -1.25 9.60 22.42 0.22 -1.03 16 22 C -0.09 -1.53 5.73 -19.88 -0.11 -1.64 16 23 C -0.05 -1.28 5.77 -19.61 -0.11 -1.39 16 24 C -0.08 -2.31 4.46 29.73 0.13 -2.18 16 25 C -0.12 -2.35 5.98 30.62 0.18 -2.17 16 26 C -0.12 -1.76 5.98 30.62 0.18 -1.57 16 27 C -0.08 -0.93 5.67 29.75 0.17 -0.76 16 28 C 0.11 4.43 6.00 86.36 0.52 4.95 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.38 20.61 7.80 -92.71 -0.72 19.89 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.11 2.04 4.77 -2.39 -0.01 2.03 16 37 H 0.14 2.30 7.42 -2.91 -0.02 2.28 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.16 0.95 8.05 -2.91 -0.02 0.93 16 40 H 0.06 1.94 7.99 -2.39 -0.02 1.92 16 41 H 0.04 1.37 7.33 -2.39 -0.02 1.35 16 42 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 45 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 0.79 8.12 -2.39 -0.02 0.77 16 48 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.05 2.33 7.03 -2.39 -0.02 2.31 16 Total: -1.00 -76.99 380.65 2.63 -74.36 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.22 Total: 29.32 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 4.25 Total: -5.81 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -3.81 Total: -121.23 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -76.99 2.63 -74.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999233364.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.564 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds