Wall clock time and date at job start Tue Mar 31 2020 16:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00033 * 2 1 4 4 H 1.48496 * 109.46812 * 239.99554 * 3 2 1 5 5 H 1.48495 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47069 * 119.99794 * 3 2 1 7 7 C 1.38811 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99499 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00045 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49717 * 325.06755 * 10 9 7 12 12 C 1.53043 * 109.49782 * 205.00240 * 10 9 7 13 13 C 1.53037 * 109.53625 * 178.68213 * 12 10 9 14 14 C 1.53196 * 109.31589 * 61.36485 * 13 12 10 15 15 N 1.46922 * 108.77270 * 305.36632 * 14 13 12 16 16 C 1.34781 * 120.62931 * 233.58213 * 15 14 13 17 17 O 1.21286 * 119.99848 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99899 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.47080 * 179.97438 * 18 16 15 20 20 C 1.38250 * 120.03348 * 269.98236 * 19 18 16 21 21 C 1.38110 * 119.93336 * 179.75302 * 20 19 18 22 22 C 1.38494 * 120.21253 * 0.55208 * 21 20 19 23 23 C 1.38218 * 119.85133 * 359.44826 * 22 21 20 24 24 C 1.38107 * 120.02795 * 90.00210 * 19 18 16 25 25 C 1.51372 * 109.75931 * 180.24629 * 23 22 21 26 26 C 1.54332 * 105.17348 * 342.81276 * 25 23 22 27 27 C 1.51376 * 130.39294 * 179.74672 * 22 21 20 28 28 C 1.46928 * 118.74113 * 53.85917 * 15 14 13 29 29 H 0.97004 * 119.99589 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00204 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.45909 * 58.66354 * 12 10 9 32 32 H 1.09000 * 109.44653 * 298.69703 * 12 10 9 33 33 H 1.09002 * 109.49987 * 301.41379 * 13 12 10 34 34 H 1.09002 * 109.52360 * 181.33548 * 13 12 10 35 35 H 1.08997 * 109.58696 * 185.57376 * 14 13 12 36 36 H 1.09003 * 109.58517 * 65.14869 * 14 13 12 37 37 H 1.08996 * 109.46683 * 60.00317 * 18 16 15 38 38 H 1.09001 * 109.47319 * 300.00046 * 18 16 15 39 39 H 1.07997 * 120.03348 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.89292 * 180.29913 * 21 20 19 41 41 H 1.07994 * 119.89650 * 359.97438 * 24 19 18 42 42 H 1.08998 * 110.30420 * 223.88268 * 25 23 22 43 43 H 1.09005 * 110.29893 * 101.73509 * 25 23 22 44 44 H 1.09006 * 110.82112 * 268.11612 * 26 25 23 45 45 H 1.08998 * 110.99731 * 144.64402 * 26 25 23 46 46 H 1.09006 * 110.30018 * 315.82710 * 27 22 21 47 47 H 1.08994 * 110.29962 * 77.87763 * 27 22 21 48 48 H 1.08994 * 109.58840 * 65.92184 * 28 15 14 49 49 H 1.09002 * 109.58551 * 186.35471 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 2.9694 -3.5513 -0.5857 12 6 1.1810 -4.7534 -0.6060 13 6 1.9571 -6.0720 -0.6354 14 6 2.3171 -6.4801 0.7966 15 7 3.0362 -5.3709 1.4378 16 6 4.2389 -5.5727 2.0117 17 8 4.8222 -4.6488 2.5383 18 6 4.8582 -6.9465 2.0002 19 6 6.1918 -6.9021 2.7007 20 6 7.3418 -6.6310 1.9828 21 6 8.5622 -6.5859 2.6278 22 6 8.6397 -6.8226 3.9901 23 6 7.4900 -7.0936 4.7078 24 6 6.2663 -7.1327 4.0604 25 6 7.8355 -7.3084 6.1658 26 6 9.3560 -7.5720 6.1860 27 6 9.8366 -6.8369 4.9168 28 6 2.4165 -4.0387 1.4469 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 0.9023 -4.4734 -1.6220 32 1 0.2811 -4.8750 -0.0031 33 1 2.8698 -5.9442 -1.2175 34 1 1.3409 -6.8474 -1.0907 35 1 2.9538 -7.3646 0.7754 36 1 1.4062 -6.6963 1.3549 37 1 5.0001 -7.2723 0.9698 38 1 4.2000 -7.6462 2.5152 39 1 7.2854 -6.4512 0.9194 40 1 9.4595 -6.3693 2.0672 41 1 5.3675 -7.3443 4.6205 42 1 7.2969 -8.1706 6.5591 43 1 7.5985 -6.4166 6.7460 44 1 9.5652 -8.6396 6.1180 45 1 9.8146 -7.1451 7.0780 46 1 10.6643 -7.3772 4.4572 47 1 10.1391 -5.8182 5.1595 48 1 1.5135 -4.0599 2.0570 49 1 3.1188 -3.3118 1.8549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000894691.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:04 Heat of formation + Delta-G solvation = -10.645530 kcal Electronic energy + Delta-G solvation = -27565.159410 eV Core-core repulsion = 23877.270587 eV Total energy + Delta-G solvation = -3687.888823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45850 -39.65367 -37.38159 -35.97048 -34.45987 -32.43339 -32.02615 -31.17688 -30.62830 -28.48327 -27.84496 -26.59110 -24.69270 -23.91497 -22.65746 -21.87339 -20.97949 -20.83591 -19.86241 -18.62762 -17.07935 -16.99205 -16.35071 -16.05702 -15.57707 -15.31444 -15.03702 -14.81825 -14.43575 -14.14761 -13.88345 -13.45504 -13.33376 -13.32076 -13.25134 -13.05333 -12.78910 -12.54220 -12.40194 -12.28775 -11.94114 -11.78644 -11.43339 -11.37690 -11.30252 -11.03891 -11.00191 -10.81943 -10.81457 -10.65278 -10.56154 -10.22126 -9.82470 -9.73123 -9.51433 -9.05048 -8.78313 -8.42798 -8.29933 -6.98405 -5.77504 -3.07168 1.26548 1.37705 2.87634 3.23290 3.46991 3.50510 3.52815 3.72313 4.20047 4.38114 4.58963 4.63018 4.73985 4.76766 4.85438 4.93510 4.94171 5.05990 5.09990 5.24539 5.27428 5.35956 5.42360 5.45456 5.48900 5.49903 5.55564 5.56206 5.58920 5.65496 5.71123 5.79908 5.90576 5.93099 6.00959 6.05106 6.12278 6.17573 6.22378 6.34989 6.36380 6.51199 6.54450 6.57621 6.76604 6.84442 6.96232 7.03510 7.71292 7.72578 8.40363 8.47051 9.52516 10.06617 10.41920 11.44712 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.002678 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.274925 B =10453.252994 C =11770.747977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.107 3.893 15 N -0.609 5.609 16 C 0.510 3.490 17 O -0.532 6.532 18 C -0.100 4.100 19 C -0.060 4.060 20 C -0.104 4.104 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.099 4.099 24 C -0.092 4.092 25 C -0.082 4.082 26 C -0.120 4.120 27 C -0.082 4.082 28 C 0.093 3.907 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.430 -22.542 6.746 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.343 5.343 16 C 0.297 3.703 17 O -0.408 6.408 18 C -0.140 4.140 19 C -0.061 4.061 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.102 4.102 23 C -0.099 4.099 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.157 4.157 27 C -0.119 4.119 28 C -0.031 4.031 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.078 0.922 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.839 -21.855 7.017 26.803 hybrid contribution -0.078 1.021 -0.092 1.028 sum 13.760 -20.834 6.925 25.911 Atomic orbital electron populations 1.69655 1.05106 1.25854 1.57483 1.24743 0.95521 0.97739 1.02687 0.86265 0.78561 0.83387 0.78009 1.21211 1.21665 1.21101 1.19223 0.91058 0.84005 1.43041 0.91139 1.42371 1.05788 0.99615 1.88130 1.20578 0.94846 0.86387 0.92429 0.93166 1.21825 0.98707 0.94149 1.01787 1.21885 1.00913 0.98210 0.95880 1.21739 0.96983 0.89063 0.93888 1.48312 1.18896 1.11111 1.56013 1.20452 0.80974 0.90299 0.78582 1.90735 1.61341 1.44223 1.44548 1.20703 0.94662 0.96203 1.02466 1.19159 0.93710 0.99703 0.93516 1.20857 0.91890 0.99598 0.99830 1.20531 0.97698 1.00883 0.93291 1.20539 0.95696 1.00293 0.93708 1.20482 0.93294 1.00348 0.95735 1.20389 0.96568 1.00594 0.93460 1.21033 0.96080 1.02058 0.92710 1.22279 0.95098 1.00652 0.97699 1.21036 0.95660 1.01140 0.94034 1.22843 0.97646 0.81755 1.00906 0.93431 0.78093 0.91441 0.92055 0.91611 0.91029 0.90302 0.91449 0.88116 0.88286 0.86027 0.86367 0.86553 0.90871 0.90235 0.91077 0.90652 0.90931 0.90313 0.92215 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.72 -18.04 5.12 -53.09 -0.27 -18.31 16 10 C 0.17 3.38 2.94 -67.58 -0.20 3.18 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.97 5.35 -26.69 -0.14 -2.11 16 13 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 14 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 15 N -0.61 -9.27 2.97 -172.50 -0.51 -9.79 16 16 C 0.51 8.08 7.69 -10.98 -0.08 8.00 16 17 O -0.53 -11.00 15.45 5.55 0.09 -10.92 16 18 C -0.10 -1.11 4.18 -29.04 -0.12 -1.24 16 19 C -0.06 -0.76 4.37 -104.67 -0.46 -1.22 16 20 C -0.10 -1.28 9.70 -39.62 -0.38 -1.66 16 21 C -0.11 -1.24 10.04 -39.53 -0.40 -1.63 16 22 C -0.10 -1.17 6.14 -104.20 -0.64 -1.81 16 23 C -0.10 -1.15 6.14 -104.20 -0.64 -1.79 16 24 C -0.09 -1.14 9.70 -39.53 -0.38 -1.53 16 25 C -0.08 -0.73 6.77 -26.86 -0.18 -0.91 16 26 C -0.12 -0.87 7.08 -25.33 -0.18 -1.05 16 27 C -0.08 -0.70 6.77 -26.85 -0.18 -0.88 16 28 C 0.09 1.79 6.05 -3.48 -0.02 1.77 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.39 10.13 7.80 -40.82 -0.32 9.81 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.89 7.63 -51.93 -0.40 0.49 16 38 H 0.10 0.85 7.89 -51.93 -0.41 0.44 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.09 2.05 7.00 -51.93 -0.36 1.68 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -34.11 390.58 -11.66 -45.76 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.10 Total: 7.79 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.44 Total: -10.82 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.06 Total: -55.63 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.11 -11.66 -45.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000894691.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.119 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds