Wall clock time and date at job start Tue Mar 31 2020 16:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00033 * 2 1 4 4 H 1.48496 * 109.46812 * 239.99554 * 3 2 1 5 5 H 1.48495 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47069 * 119.99794 * 3 2 1 7 7 C 1.38811 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99499 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00045 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49717 * 325.06755 * 10 9 7 12 12 C 1.53043 * 109.49782 * 205.00240 * 10 9 7 13 13 C 1.53037 * 109.53625 * 178.68213 * 12 10 9 14 14 C 1.53196 * 109.31589 * 61.36485 * 13 12 10 15 15 N 1.46922 * 108.77270 * 305.36632 * 14 13 12 16 16 C 1.34781 * 120.62931 * 233.58213 * 15 14 13 17 17 O 1.21286 * 119.99848 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99899 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.47080 * 179.97438 * 18 16 15 20 20 C 1.38250 * 120.03348 * 269.98236 * 19 18 16 21 21 C 1.38110 * 119.93336 * 179.75302 * 20 19 18 22 22 C 1.38494 * 120.21253 * 0.55208 * 21 20 19 23 23 C 1.38218 * 119.85133 * 359.44826 * 22 21 20 24 24 C 1.38107 * 120.02795 * 90.00210 * 19 18 16 25 25 C 1.51372 * 109.75931 * 180.24629 * 23 22 21 26 26 C 1.54332 * 105.17348 * 342.81276 * 25 23 22 27 27 C 1.51376 * 130.39294 * 179.74672 * 22 21 20 28 28 C 1.46928 * 118.74113 * 53.85917 * 15 14 13 29 29 H 0.97004 * 119.99589 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00204 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.45909 * 58.66354 * 12 10 9 32 32 H 1.09000 * 109.44653 * 298.69703 * 12 10 9 33 33 H 1.09002 * 109.49987 * 301.41379 * 13 12 10 34 34 H 1.09002 * 109.52360 * 181.33548 * 13 12 10 35 35 H 1.08997 * 109.58696 * 185.57376 * 14 13 12 36 36 H 1.09003 * 109.58517 * 65.14869 * 14 13 12 37 37 H 1.08996 * 109.46683 * 60.00317 * 18 16 15 38 38 H 1.09001 * 109.47319 * 300.00046 * 18 16 15 39 39 H 1.07997 * 120.03348 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.89292 * 180.29913 * 21 20 19 41 41 H 1.07994 * 119.89650 * 359.97438 * 24 19 18 42 42 H 1.08998 * 110.30420 * 223.88268 * 25 23 22 43 43 H 1.09005 * 110.29893 * 101.73509 * 25 23 22 44 44 H 1.09006 * 110.82112 * 268.11612 * 26 25 23 45 45 H 1.08998 * 110.99731 * 144.64402 * 26 25 23 46 46 H 1.09006 * 110.30018 * 315.82710 * 27 22 21 47 47 H 1.08994 * 110.29962 * 77.87763 * 27 22 21 48 48 H 1.08994 * 109.58840 * 65.92184 * 28 15 14 49 49 H 1.09002 * 109.58551 * 186.35471 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 2.9694 -3.5513 -0.5857 12 6 1.1810 -4.7534 -0.6060 13 6 1.9571 -6.0720 -0.6354 14 6 2.3171 -6.4801 0.7966 15 7 3.0362 -5.3709 1.4378 16 6 4.2389 -5.5727 2.0117 17 8 4.8222 -4.6488 2.5383 18 6 4.8582 -6.9465 2.0002 19 6 6.1918 -6.9021 2.7007 20 6 7.3418 -6.6310 1.9828 21 6 8.5622 -6.5859 2.6278 22 6 8.6397 -6.8226 3.9901 23 6 7.4900 -7.0936 4.7078 24 6 6.2663 -7.1327 4.0604 25 6 7.8355 -7.3084 6.1658 26 6 9.3560 -7.5720 6.1860 27 6 9.8366 -6.8369 4.9168 28 6 2.4165 -4.0387 1.4469 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 0.9023 -4.4734 -1.6220 32 1 0.2811 -4.8750 -0.0031 33 1 2.8698 -5.9442 -1.2175 34 1 1.3409 -6.8474 -1.0907 35 1 2.9538 -7.3646 0.7754 36 1 1.4062 -6.6963 1.3549 37 1 5.0001 -7.2723 0.9698 38 1 4.2000 -7.6462 2.5152 39 1 7.2854 -6.4512 0.9194 40 1 9.4595 -6.3693 2.0672 41 1 5.3675 -7.3443 4.6205 42 1 7.2969 -8.1706 6.5591 43 1 7.5985 -6.4166 6.7460 44 1 9.5652 -8.6396 6.1180 45 1 9.8146 -7.1451 7.0780 46 1 10.6643 -7.3772 4.4572 47 1 10.1391 -5.8182 5.1595 48 1 1.5135 -4.0599 2.0570 49 1 3.1188 -3.3118 1.8549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000894691.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:04 Heat of formation + Delta-G solvation = -30.209389 kcal Electronic energy + Delta-G solvation = -27566.007763 eV Core-core repulsion = 23877.270587 eV Total energy + Delta-G solvation = -3688.737176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46799 -40.70640 -38.72001 -36.82224 -36.21009 -33.98855 -32.98141 -32.70256 -31.56224 -30.02016 -28.73845 -27.54783 -25.90506 -25.79958 -23.49735 -23.23087 -22.02196 -21.67271 -21.05580 -19.82898 -19.13094 -18.19796 -17.23817 -17.00417 -16.73195 -16.52993 -16.24627 -15.91362 -15.67065 -15.54735 -15.39244 -15.06304 -14.76459 -14.18125 -14.13643 -13.99478 -13.79850 -13.71969 -13.65017 -13.33808 -13.08551 -12.91573 -12.87515 -12.54015 -12.48857 -12.28180 -12.17785 -12.02954 -11.96518 -11.88253 -11.72380 -11.65017 -11.60595 -11.34740 -11.12161 -10.81020 -9.71810 -9.66497 -9.28738 -9.02030 -8.01022 -5.30115 0.38076 0.49359 1.41587 1.44570 1.50840 1.66935 2.05541 2.51368 2.81635 3.31800 3.45559 3.65923 3.69572 3.75112 3.86854 4.03078 4.09736 4.10696 4.15566 4.17464 4.26588 4.32501 4.35898 4.39188 4.50919 4.57007 4.59356 4.65737 4.73582 4.78219 4.80647 4.88713 4.91130 4.93343 4.94283 5.06562 5.08132 5.15985 5.23212 5.28769 5.35250 5.38507 5.41750 5.48056 5.50718 5.60462 5.65668 5.72307 6.12151 6.21935 6.52500 7.24225 7.28244 8.01112 8.26176 9.21406 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.002678 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.274925 B =10453.252994 C =11770.747977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.607 5.607 16 C 0.504 3.496 17 O -0.592 6.592 18 C -0.087 4.087 19 C -0.078 4.078 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.084 4.084 26 C -0.113 4.113 27 C -0.083 4.083 28 C 0.108 3.892 29 H 0.253 0.747 30 H 0.377 0.623 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.252 -25.451 6.729 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.058 3.942 11 H 0.048 0.952 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.021 4.021 15 N -0.340 5.340 16 C 0.294 3.706 17 O -0.472 6.472 18 C -0.126 4.126 19 C -0.078 4.078 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.121 4.121 26 C -0.150 4.150 27 C -0.120 4.120 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.142 0.858 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.673 -24.840 6.981 29.682 hybrid contribution -0.294 1.880 -0.075 1.904 sum 14.379 -22.959 6.907 27.957 Atomic orbital electron populations 1.69784 1.06268 1.26265 1.59000 1.25485 0.96424 1.00786 1.03362 0.85309 0.77408 0.79629 0.78034 1.20309 1.21369 1.21117 1.19458 0.90941 0.85576 1.41838 0.91926 1.42517 1.05520 1.00678 1.88329 1.20752 0.94595 0.86040 0.92844 0.95165 1.21749 0.98498 0.94728 1.00763 1.21884 1.00894 0.96544 0.96674 1.22159 0.98236 0.88620 0.93084 1.48363 1.19076 1.10448 1.56145 1.21379 0.80447 0.91668 0.77141 1.90710 1.62857 1.46570 1.47089 1.20739 0.94071 0.93156 1.04666 1.19399 0.94457 1.00101 0.93879 1.21119 0.92358 0.99939 1.00503 1.20839 0.98249 1.00878 0.93909 1.20980 0.96948 0.99664 0.94000 1.20927 0.93306 1.00035 0.97323 1.20662 0.97310 1.01043 0.93810 1.21120 0.97538 1.02430 0.90984 1.22302 0.93738 1.01314 0.97688 1.21124 0.95075 1.01629 0.94145 1.22227 0.96332 0.83583 0.99627 0.93776 0.79026 0.92186 0.91593 0.91681 0.87026 0.85904 0.89803 0.85029 0.84960 0.85223 0.84895 0.85796 0.89595 0.90605 0.89972 0.88982 0.89471 0.90302 0.92672 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.71 13.06 21.65 0.28 -59.43 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 48.22 29.55 68.60 2.03 50.25 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.25 -14.41 9.93 84.03 0.83 -13.57 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -37.98 5.12 -321.86 -1.65 -39.63 16 10 C 0.17 6.85 2.94 45.21 0.13 6.98 16 11 H 0.03 1.35 8.08 -2.38 -0.02 1.33 16 12 C -0.12 -3.56 5.35 30.62 0.16 -3.40 16 13 C -0.12 -2.35 6.08 30.67 0.19 -2.16 16 14 C 0.10 1.78 6.34 86.36 0.55 2.33 16 15 N -0.61 -17.80 2.97 -818.05 -2.43 -20.23 16 16 C 0.50 15.63 7.69 87.66 0.67 16.31 16 17 O -0.59 -25.38 15.45 -3.05 -0.05 -25.43 16 18 C -0.09 -1.70 4.18 29.10 0.12 -1.58 16 19 C -0.08 -1.89 4.37 -19.89 -0.09 -1.97 16 20 C -0.12 -2.93 9.70 22.24 0.22 -2.71 16 21 C -0.12 -2.77 10.04 22.30 0.22 -2.55 16 22 C -0.12 -2.57 6.14 -19.59 -0.12 -2.69 16 23 C -0.12 -2.65 6.14 -19.59 -0.12 -2.77 16 24 C -0.11 -2.67 9.70 22.30 0.22 -2.45 16 25 C -0.08 -1.39 6.77 30.51 0.21 -1.18 16 26 C -0.11 -1.41 7.08 31.50 0.22 -1.19 16 27 C -0.08 -1.30 6.77 30.52 0.21 -1.09 16 28 C 0.11 4.30 6.05 86.51 0.52 4.82 16 29 H 0.25 15.21 8.31 -92.71 -0.77 14.43 16 30 H 0.38 20.52 7.80 -92.71 -0.72 19.79 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.12 1.20 5.93 -2.39 -0.01 1.19 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.13 1.76 7.63 -2.39 -0.02 1.74 16 38 H 0.13 1.71 7.89 -2.39 -0.02 1.69 16 39 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.04 2.08 7.00 -2.39 -0.02 2.06 16 Total: -1.00 -79.32 390.58 3.02 -76.30 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.21 Total: 30.60 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.62 Total: -12.43 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -3.79 Total: -119.29 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -79.32 3.02 -76.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000894691.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.091 kcal (2) G-P(sol) polarization free energy of solvation -79.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds