Wall clock time and date at job start Tue Mar 31 2020 16:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00245 * 2 1 4 4 H 1.48499 * 109.47542 * 266.36304 * 3 2 1 5 5 H 1.48496 * 109.47132 * 26.36361 * 3 2 1 6 6 H 1.48499 * 109.47210 * 146.36158 * 3 2 1 7 7 C 1.38819 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99872 * 341.61733 * 7 2 1 9 9 N 1.36939 * 120.00061 * 161.62367 * 7 2 1 10 10 C 1.46926 * 120.63085 * 150.10515 * 9 7 2 11 11 C 1.53192 * 108.77537 * 126.11426 * 10 9 7 12 12 C 1.53039 * 109.31090 * 54.63508 * 11 10 9 13 13 C 1.53039 * 109.54032 * 298.63283 * 12 11 10 14 14 H 1.09004 * 109.49717 * 301.41747 * 13 12 11 15 15 N 1.46495 * 109.49863 * 181.31996 * 13 12 11 16 16 C 1.34785 * 119.99760 * 155.00045 * 15 13 12 17 17 O 1.21549 * 120.00234 * 359.97438 * 16 15 13 18 18 C 1.47851 * 119.99626 * 179.97438 * 16 15 13 19 19 C 1.39325 * 119.88390 * 6.20163 * 18 16 15 20 20 C 1.37940 * 119.60887 * 179.74817 * 19 18 16 21 21 C 1.38083 * 119.93209 * 0.69340 * 20 19 18 22 22 C 1.39020 * 120.85641 * 359.69484 * 21 20 19 23 23 C 1.37433 * 119.76863 * 359.73691 * 22 21 20 24 24 C 1.50612 * 122.62645 * 180.80799 * 23 22 21 25 25 C 1.52722 * 110.61170 * 342.03483 * 24 23 22 26 26 C 1.53326 * 108.38995 * 51.03144 * 25 24 23 27 27 C 1.50656 * 117.70053 * 179.42251 * 22 21 20 28 28 C 1.46924 * 120.62848 * 329.81863 * 9 7 2 29 29 H 0.97002 * 119.99809 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58217 * 245.89999 * 10 9 7 31 31 H 1.08998 * 109.58340 * 6.32590 * 10 9 7 32 32 H 1.08999 * 109.49487 * 174.58158 * 11 10 9 33 33 H 1.08996 * 109.49450 * 294.68132 * 11 10 9 34 34 H 1.09002 * 109.46441 * 58.65303 * 12 11 10 35 35 H 1.09001 * 109.45656 * 178.62613 * 12 11 10 36 36 H 0.96995 * 120.00378 * 335.00114 * 15 13 12 37 37 H 1.08007 * 120.19055 * 0.02562 * 19 18 16 38 38 H 1.08000 * 120.03330 * 180.41102 * 20 19 18 39 39 H 1.08005 * 119.57515 * 179.71241 * 21 20 19 40 40 H 1.08998 * 109.24628 * 102.32722 * 24 23 22 41 41 H 1.08997 * 109.24729 * 221.74142 * 24 23 22 42 42 H 1.09004 * 109.68238 * 291.30577 * 25 24 23 43 43 H 1.09005 * 109.68368 * 170.75837 * 25 24 23 44 44 H 1.09001 * 109.68351 * 170.53602 * 26 25 24 45 45 H 1.09003 * 109.71074 * 50.00431 * 26 25 24 46 46 H 1.08996 * 109.25105 * 282.47748 * 27 22 21 47 47 H 1.09002 * 109.24975 * 41.90455 * 27 22 21 48 48 H 1.09003 * 109.58832 * 353.67423 * 28 9 7 49 49 H 1.09009 * 109.58730 * 114.09712 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.5747 2.0020 -1.3972 5 1 1.4114 2.6736 0.6217 6 1 3.5072 1.4635 0.7756 7 6 2.0103 -1.2022 -0.0005 8 1 1.5116 -2.1137 0.2940 9 7 3.3273 -1.2323 -0.3744 10 6 4.2434 -2.2319 0.1915 11 6 4.9263 -2.9811 -0.9571 12 6 5.5968 -1.9717 -1.8918 13 6 4.5369 -1.0408 -2.4850 14 1 3.7964 -1.6303 -3.0256 15 7 5.1755 -0.0952 -3.4038 16 6 4.4600 0.4649 -4.3992 17 8 3.2849 0.1851 -4.5350 18 6 5.1044 1.4196 -5.3262 19 6 6.4780 1.6407 -5.2508 20 6 7.0742 2.5287 -6.1218 21 6 6.3068 3.2025 -7.0512 22 6 4.9344 2.9944 -7.1283 23 6 4.3303 2.1035 -6.2739 24 6 2.8525 1.8155 -6.3129 25 6 2.1095 2.9182 -7.0642 26 6 2.8023 3.1348 -8.4148 27 6 4.1643 3.7769 -8.1600 28 6 3.8495 -0.2697 -1.3538 29 1 -0.4850 0.8401 -0.0004 30 1 4.9967 -1.7331 0.8014 31 1 3.6817 -2.9366 0.8046 32 1 5.6787 -3.6584 -0.5531 33 1 4.1822 -3.5523 -1.5120 34 1 6.3232 -1.3839 -1.3306 35 1 6.1042 -2.5036 -2.6966 36 1 6.1133 0.1278 -3.2958 37 1 7.0730 1.1163 -4.5176 38 1 8.1394 2.7003 -6.0738 39 1 6.7789 3.9000 -7.7273 40 1 2.6852 0.8628 -6.8154 41 1 2.4711 1.7552 -5.2936 42 1 2.1384 3.8409 -6.4846 43 1 1.0741 2.6185 -7.2266 44 1 2.1963 3.7936 -9.0367 45 1 2.9363 2.1767 -8.9170 46 1 4.0198 4.7967 -7.8034 47 1 4.7309 3.7992 -9.0909 48 1 3.0280 0.3203 -1.7603 49 1 4.5707 0.3891 -0.8699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007401995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:05 Heat of formation + Delta-G solvation = 0.379666 kcal Electronic energy + Delta-G solvation = -28878.096971 eV Core-core repulsion = 25190.686236 eV Total energy + Delta-G solvation = -3687.410735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.68114 -39.06454 -37.47186 -36.20166 -34.31235 -32.74134 -32.49675 -30.70303 -30.38441 -29.79192 -28.34166 -25.27460 -24.29753 -23.50408 -22.79469 -22.54889 -21.55157 -20.38074 -19.52165 -19.24791 -17.36723 -16.81453 -16.24285 -15.86165 -15.59313 -15.14510 -15.10187 -14.76618 -14.30566 -14.06548 -13.85831 -13.83497 -13.68235 -13.28051 -13.06179 -12.77913 -12.75063 -12.56372 -12.31863 -12.17758 -12.09241 -11.85290 -11.58053 -11.54973 -11.08888 -10.89102 -10.82805 -10.69970 -10.62129 -10.39753 -10.23593 -10.10268 -9.74826 -9.47298 -9.20819 -8.99209 -8.79369 -8.65407 -8.44107 -6.90792 -5.90444 -3.29800 0.81079 1.23661 2.98802 3.33893 3.40487 3.50422 3.53305 3.80838 4.45534 4.56105 4.58407 4.69084 4.81759 4.84832 4.96828 5.06577 5.08555 5.12883 5.19684 5.27558 5.28276 5.46467 5.50213 5.51112 5.55322 5.68401 5.71697 5.72989 5.84101 5.85541 5.95776 5.96942 6.04758 6.06137 6.20909 6.21907 6.26902 6.28260 6.32392 6.34949 6.45311 6.55331 6.65472 6.65647 6.69965 6.81877 6.85797 6.96424 7.75528 8.02572 8.38434 8.49192 8.97760 9.76218 10.13114 11.25525 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.004052 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.085008 B = 6908.399890 C = 8078.525717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.117 4.117 13 C 0.126 3.874 14 H 0.093 0.907 15 N -0.721 5.721 16 C 0.548 3.452 17 O -0.518 6.518 18 C -0.134 4.134 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.099 4.099 22 C -0.090 4.090 23 C -0.012 4.012 24 C -0.088 4.088 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.077 4.077 28 C 0.119 3.881 29 H 0.263 0.737 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.392 0.608 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.695 5.137 -15.542 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.169 4.169 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.200 1.200 7 C -0.392 4.392 8 H 0.103 0.897 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.155 4.155 13 C 0.021 3.979 14 H 0.111 0.889 15 N -0.373 5.373 16 C 0.336 3.664 17 O -0.395 6.395 18 C -0.137 4.137 19 C -0.107 4.107 20 C -0.152 4.152 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.013 4.013 24 C -0.125 4.125 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.114 4.114 28 C -0.008 4.008 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 14.649 4.996 -15.577 21.959 hybrid contribution 1.163 1.149 0.098 1.638 sum 15.813 6.145 -15.479 22.965 Atomic orbital electron populations 1.69809 1.05704 1.26579 1.52722 1.25304 0.95191 0.97559 0.98850 0.86980 0.79586 0.84688 0.77364 1.21199 1.23127 1.19953 1.18883 0.83901 0.94493 1.41953 0.89668 1.44284 1.07534 1.36020 1.44718 1.20999 0.92436 0.91554 0.93119 1.22001 0.99480 0.97481 0.98228 1.21686 0.97411 0.97551 0.98828 1.21771 0.95079 0.90384 0.90654 0.88928 1.46075 1.13753 1.46454 1.31003 1.18289 0.86474 0.80987 0.80693 1.90797 1.15218 1.60781 1.72706 1.20073 0.94010 1.00615 0.98970 1.21221 0.93525 0.97571 0.98429 1.20941 0.99940 0.97793 0.96504 1.21309 0.93307 0.98826 0.98249 1.19605 0.93755 0.98005 0.97671 1.19785 0.96345 0.93097 0.92080 1.20835 0.89480 0.98403 1.03764 1.21664 0.99446 0.99317 0.95798 1.21569 0.95487 1.01015 0.97751 1.20456 0.95748 0.98506 0.96710 1.21757 0.97564 0.92450 0.89047 0.92731 0.95922 0.91615 0.92160 0.91633 0.92164 0.92463 0.77340 0.85732 0.85607 0.85945 0.89865 0.87639 0.91876 0.91197 0.91573 0.91630 0.90640 0.90875 0.90048 0.96061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.76 13.97 55.49 0.78 -27.98 16 2 C 0.03 0.92 5.25 -17.43 -0.09 0.83 16 3 Si 0.88 23.67 24.36 -169.99 -4.14 19.53 16 4 H -0.28 -7.61 6.38 56.52 0.36 -7.25 16 5 H -0.30 -8.17 7.11 56.52 0.40 -7.76 16 6 H -0.27 -7.17 6.95 56.52 0.39 -6.77 16 7 C -0.26 -7.63 10.03 -15.06 -0.15 -7.78 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.60 -14.69 2.74 -172.31 -0.47 -15.16 16 10 C 0.14 2.83 6.52 -3.71 -0.02 2.80 16 11 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 12 C -0.12 -1.73 5.35 -26.69 -0.14 -1.87 16 13 C 0.13 2.35 2.60 -67.82 -0.18 2.17 16 14 H 0.09 1.97 7.58 -51.93 -0.39 1.58 16 15 N -0.72 -11.45 5.03 -54.63 -0.27 -11.73 16 16 C 0.55 9.68 7.64 -12.32 -0.09 9.58 16 17 O -0.52 -11.10 12.75 5.32 0.07 -11.04 16 18 C -0.13 -1.96 5.88 -104.83 -0.62 -2.57 16 19 C -0.09 -1.01 9.52 -39.29 -0.37 -1.38 16 20 C -0.13 -1.30 10.03 -39.75 -0.40 -1.70 16 21 C -0.10 -0.97 9.60 -39.35 -0.38 -1.35 16 22 C -0.09 -1.04 5.73 -104.65 -0.60 -1.64 16 23 C -0.01 -0.17 5.77 -104.23 -0.60 -0.77 16 24 C -0.09 -1.33 4.20 -28.07 -0.12 -1.45 16 25 C -0.12 -1.50 5.98 -26.70 -0.16 -1.65 16 26 C -0.12 -1.16 5.98 -26.71 -0.16 -1.32 16 27 C -0.08 -0.71 5.67 -28.05 -0.16 -0.87 16 28 C 0.12 2.72 3.77 -3.71 -0.01 2.70 16 29 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 30 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.07 1.28 7.93 -51.93 -0.41 0.86 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.39 4.79 6.65 -40.82 -0.27 4.52 16 37 H 0.12 1.12 6.43 -52.48 -0.34 0.78 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.88 8.05 -52.48 -0.42 0.46 16 40 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 41 H 0.11 1.95 6.00 -51.93 -0.31 1.64 16 42 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 48 H 0.08 2.17 4.53 -51.93 -0.24 1.94 16 49 H 0.02 0.48 7.22 -51.92 -0.37 0.11 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -34.26 371.15 -10.72 -44.98 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.85 Total: 4.33 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -4.42 Total: -8.53 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.03 Total: -54.87 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.14 Total: 19.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.26 -10.72 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007401995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.361 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds