Wall clock time and date at job start Tue Mar 31 2020 16:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99525 * 2 1 4 4 H 1.48496 * 109.47131 * 239.99645 * 3 2 1 5 5 H 1.48499 * 109.47435 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46840 * 120.00093 * 3 2 1 7 7 C 1.38809 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00386 * 197.36377 * 7 2 1 9 9 N 1.36939 * 119.99652 * 17.36552 * 7 2 1 10 10 C 1.46924 * 120.63216 * 27.66613 * 9 7 2 11 11 C 1.53196 * 108.77569 * 126.40981 * 10 9 7 12 12 C 1.53042 * 109.31100 * 54.63412 * 11 10 9 13 13 C 1.53034 * 109.53877 * 298.63449 * 12 11 10 14 14 H 1.09001 * 109.49889 * 301.40914 * 13 12 11 15 15 N 1.46507 * 109.49778 * 181.31898 * 13 12 11 16 16 C 1.34770 * 120.00173 * 155.16235 * 15 13 12 17 17 O 1.21559 * 120.00205 * 359.97438 * 16 15 13 18 18 C 1.47840 * 120.00298 * 179.97438 * 16 15 13 19 19 C 1.39607 * 120.26835 * 359.72204 * 18 16 15 20 20 C 1.37627 * 119.61843 * 179.85578 * 19 18 16 21 21 C 1.39074 * 120.75779 * 0.57482 * 20 19 18 22 22 C 1.37838 * 119.89992 * 359.52718 * 21 20 19 23 23 C 1.38641 * 119.82141 * 0.21030 * 22 21 20 24 24 C 1.50659 * 122.55406 * 180.43768 * 22 21 20 25 25 C 1.52728 * 110.60244 * 342.30484 * 24 22 21 26 26 C 1.53331 * 108.36547 * 51.11965 * 25 24 22 27 27 C 1.50692 * 117.60817 * 179.36470 * 21 20 19 28 28 C 1.46926 * 120.62854 * 207.68465 * 9 7 2 29 29 H 0.96994 * 119.99972 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58579 * 246.19596 * 10 9 7 31 31 H 1.09000 * 109.58484 * 6.62464 * 10 9 7 32 32 H 1.08995 * 109.49677 * 174.58308 * 11 10 9 33 33 H 1.09001 * 109.49867 * 294.68207 * 11 10 9 34 34 H 1.08999 * 109.46165 * 58.65517 * 12 11 10 35 35 H 1.09002 * 109.45819 * 178.61268 * 12 11 10 36 36 H 0.97002 * 119.99831 * 335.15992 * 15 13 12 37 37 H 1.08004 * 120.19007 * 0.12188 * 19 18 16 38 38 H 1.08008 * 119.62353 * 180.27492 * 20 19 18 39 39 H 1.08007 * 119.78017 * 179.97438 * 23 22 21 40 40 H 1.08994 * 109.25257 * 102.59495 * 24 22 21 41 41 H 1.08999 * 109.24605 * 222.05753 * 24 22 21 42 42 H 1.09003 * 109.68391 * 170.83153 * 25 24 22 43 43 H 1.08996 * 109.68733 * 291.40052 * 25 24 22 44 44 H 1.08996 * 109.68331 * 49.75703 * 26 25 24 45 45 H 1.08999 * 109.68198 * 170.27859 * 26 25 24 46 46 H 1.09006 * 109.24726 * 42.14060 * 27 21 20 47 47 H 1.09000 * 109.25223 * 282.71718 * 27 21 20 48 48 H 1.08999 * 109.58602 * 353.37560 * 28 9 7 49 49 H 1.08997 * 109.58683 * 113.80377 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0535 -1.2235 0.2786 9 7 1.3725 -2.3608 -0.3550 10 6 0.2279 -2.3337 -1.2758 11 6 0.5008 -3.3031 -2.4303 12 6 0.8188 -4.6886 -1.8633 13 6 2.0745 -4.6093 -0.9922 14 1 2.9083 -4.2390 -1.5886 15 7 2.3961 -5.9420 -0.4754 16 6 3.6624 -6.2411 -0.1244 17 8 4.5379 -5.4054 -0.2371 18 6 3.9869 -7.5857 0.3976 19 6 2.9848 -8.5480 0.5348 20 6 3.3023 -9.7964 1.0194 21 6 4.6078 -10.1064 1.3851 22 6 5.6013 -9.1600 1.2540 23 6 5.2935 -7.9009 0.7619 24 6 7.0361 -9.4345 1.6225 25 6 7.1337 -10.6626 2.5251 26 6 6.3649 -11.8117 1.8621 27 6 4.8732 -11.4898 1.9206 28 6 1.8195 -3.6547 0.1786 29 1 -0.4850 0.8400 0.0004 30 1 -0.6742 -2.6406 -0.7465 31 1 0.0986 -1.3252 -1.6685 32 1 -0.3800 -3.3650 -3.0693 33 1 1.3494 -2.9451 -3.0132 34 1 -0.0203 -5.0355 -1.2602 35 1 0.9892 -5.3862 -2.6834 36 1 1.6975 -6.6090 -0.3858 37 1 1.9670 -8.3154 0.2582 38 1 2.5279 -10.5423 1.1213 39 1 6.0725 -7.1597 0.6599 40 1 7.6133 -9.6090 0.7146 41 1 7.4439 -8.5704 2.1471 42 1 8.1793 -10.9444 2.6500 43 1 6.6943 -10.4397 3.4973 44 1 6.6784 -11.9118 0.8230 45 1 6.5617 -12.7413 2.3961 46 1 4.3247 -12.2178 1.3228 47 1 4.5337 -11.5460 2.9549 48 1 2.7402 -3.5177 0.7456 49 1 1.0471 -4.0693 0.8264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009422449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:12 Heat of formation + Delta-G solvation = -12.994785 kcal Electronic energy + Delta-G solvation = -27623.652505 eV Core-core repulsion = 23935.661810 eV Total energy + Delta-G solvation = -3687.990695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.54631 -39.27609 -37.34679 -36.05295 -34.33017 -32.81663 -32.45436 -30.77435 -30.42117 -29.15563 -28.43215 -25.25803 -24.49044 -23.44602 -22.55606 -22.12173 -21.79520 -20.69181 -19.58163 -19.07137 -17.50098 -16.76775 -16.10574 -15.97216 -15.34677 -15.01398 -14.78264 -14.67374 -14.47935 -14.19225 -13.99523 -13.74792 -13.60975 -13.39883 -13.16130 -13.05367 -12.77982 -12.48206 -12.37857 -12.31881 -11.79587 -11.67497 -11.63415 -11.25300 -11.06440 -10.88466 -10.81545 -10.75745 -10.72310 -10.24811 -10.22268 -9.94091 -9.87820 -9.61133 -9.50125 -8.97513 -8.86572 -8.70503 -8.36163 -6.64490 -5.75374 -3.17223 0.76278 1.17709 2.91347 3.35634 3.43682 3.47829 3.51529 3.80156 4.29040 4.32596 4.53963 4.54661 4.65815 4.76738 4.80204 4.91715 4.99340 5.18412 5.19486 5.24444 5.31002 5.40372 5.47258 5.51791 5.54456 5.57716 5.64074 5.64470 5.69666 5.74424 5.80203 5.87375 5.95311 6.10321 6.14993 6.18582 6.23794 6.27661 6.38143 6.54856 6.63225 6.69033 6.71637 6.74876 6.86908 7.02813 7.38238 7.66821 7.77139 7.86050 8.44261 8.50900 9.25327 9.87642 10.43337 11.33397 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002416 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.616316 B =11587.752782 C =12425.137472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.126 3.874 14 H 0.087 0.913 15 N -0.717 5.717 16 C 0.553 3.447 17 O -0.533 6.533 18 C -0.128 4.128 19 C -0.089 4.089 20 C -0.129 4.129 21 C -0.058 4.058 22 C -0.086 4.086 23 C -0.060 4.060 24 C -0.081 4.081 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.083 4.083 28 C 0.143 3.857 29 H 0.254 0.746 30 H 0.019 0.981 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.393 0.607 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.385 -25.814 1.428 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.105 0.895 15 N -0.368 5.368 16 C 0.339 3.661 17 O -0.411 6.411 18 C -0.131 4.131 19 C -0.108 4.108 20 C -0.147 4.147 21 C -0.058 4.058 22 C -0.086 4.086 23 C -0.079 4.079 24 C -0.118 4.118 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.120 4.120 28 C 0.015 3.985 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.228 0.772 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.888 -25.008 1.352 26.258 hybrid contribution -0.154 0.564 0.034 0.586 sum 7.734 -24.444 1.386 25.676 Atomic orbital electron populations 1.70032 1.05224 1.25579 1.54094 1.25020 0.95304 0.98389 1.00951 0.86344 0.78895 0.83180 0.78247 1.20968 1.21652 1.20859 1.19188 0.92813 0.84715 1.41239 0.91597 1.43998 1.35617 1.01033 1.50388 1.20850 0.88570 0.98591 0.87863 1.22182 1.00445 0.95158 1.00146 1.21680 0.96717 0.98641 0.98258 1.21771 0.97852 0.81113 0.97206 0.89510 1.46066 1.09054 1.15849 1.65791 1.18242 0.82901 0.86947 0.77964 1.90797 1.47010 1.49470 1.53802 1.19975 0.94806 0.94370 1.03991 1.21221 0.98612 0.93064 0.97916 1.21061 0.96035 0.96831 1.00724 1.19807 0.92870 0.95499 0.97660 1.19579 0.95650 0.93100 1.00261 1.21312 0.95847 0.95934 0.94838 1.20487 0.92363 0.98887 1.00101 1.21557 1.00494 0.94785 0.98937 1.21556 0.94583 0.98271 1.01401 1.20528 0.97179 0.92922 1.01339 1.21181 0.97937 0.86798 0.92593 0.93628 0.96307 0.89225 0.92696 0.92397 0.92253 0.93083 0.77231 0.85592 0.85665 0.84718 0.90475 0.90438 0.91343 0.91512 0.91538 0.91407 0.90600 0.90376 0.92379 0.96503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 11.19 55.49 0.62 -25.99 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 22.38 29.59 -169.99 -5.03 17.35 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -7.16 9.59 -15.06 -0.14 -7.31 16 8 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 9 N -0.59 -15.25 2.99 -172.32 -0.52 -15.77 16 10 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 11 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 12 C -0.11 -1.89 5.35 -26.69 -0.14 -2.03 16 13 C 0.13 2.33 2.60 -67.81 -0.18 2.16 16 14 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 15 N -0.72 -10.93 5.03 -54.63 -0.27 -11.21 16 16 C 0.55 9.21 7.74 -12.33 -0.10 9.11 16 17 O -0.53 -11.10 16.01 5.31 0.09 -11.01 16 18 C -0.13 -1.72 5.87 -105.08 -0.62 -2.33 16 19 C -0.09 -0.94 9.54 -39.29 -0.37 -1.32 16 20 C -0.13 -1.17 9.58 -39.49 -0.38 -1.55 16 21 C -0.06 -0.53 5.75 -104.46 -0.60 -1.14 16 22 C -0.09 -0.89 5.73 -104.64 -0.60 -1.49 16 23 C -0.06 -0.77 9.16 -39.05 -0.36 -1.12 16 24 C -0.08 -0.65 5.66 -28.04 -0.16 -0.81 16 25 C -0.12 -0.77 5.98 -26.70 -0.16 -0.93 16 26 C -0.12 -0.71 5.98 -26.70 -0.16 -0.87 16 27 C -0.08 -0.54 5.66 -28.03 -0.16 -0.70 16 28 C 0.14 3.21 6.09 -3.71 -0.02 3.18 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.39 4.66 6.65 -40.82 -0.27 4.39 16 37 H 0.13 1.06 6.43 -52.48 -0.34 0.72 16 38 H 0.13 0.83 8.05 -52.48 -0.42 0.41 16 39 H 0.13 1.78 7.63 -52.48 -0.40 1.38 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.45 8.10 -51.93 -0.42 0.02 16 44 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.42 8.12 -51.93 -0.42 -0.01 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -32.94 383.10 -11.77 -44.71 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.01 Total: 2.14 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.41 Total: -6.00 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.17 Total: -52.96 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.94 -11.77 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009422449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.717 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds