Wall clock time and date at job start Tue Mar 31 2020 16:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47027 * 299.99840 * 3 2 1 6 6 H 1.48496 * 109.47253 * 60.00460 * 3 2 1 7 7 C 1.38815 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00195 * 197.36337 * 7 2 1 9 9 N 1.36937 * 119.99570 * 17.37289 * 7 2 1 10 10 C 1.46934 * 120.62637 * 207.69156 * 9 7 2 11 11 C 1.53189 * 108.77287 * 233.58568 * 10 9 7 12 12 C 1.53046 * 109.33883 * 305.37800 * 11 10 9 13 13 C 1.53032 * 109.53757 * 61.31726 * 12 11 10 14 14 H 1.08997 * 109.50014 * 58.65624 * 13 12 11 15 15 N 1.46507 * 109.49929 * 178.71607 * 13 12 11 16 16 C 1.34769 * 120.00273 * 204.93364 * 15 13 12 17 17 O 1.21558 * 120.00201 * 0.02562 * 16 15 13 18 18 C 1.47842 * 120.00138 * 179.97438 * 16 15 13 19 19 C 1.39610 * 120.26868 * 0.28339 * 18 16 15 20 20 C 1.37634 * 119.61816 * 180.41043 * 19 18 16 21 21 C 1.39077 * 120.75348 * 359.46494 * 20 19 18 22 22 C 1.37827 * 119.90204 * 359.97335 * 21 20 19 23 23 C 1.38653 * 119.82800 * 0.42641 * 22 21 20 24 24 C 1.50661 * 122.54404 * 180.75445 * 22 21 20 25 25 C 1.52721 * 110.59060 * 341.87525 * 24 22 21 26 26 C 1.53319 * 108.36838 * 51.23643 * 25 24 22 27 27 C 1.50684 * 117.60966 * 179.60195 * 21 20 19 28 28 C 1.46918 * 120.63578 * 27.66337 * 9 7 2 29 29 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58506 * 353.36980 * 10 9 7 31 31 H 1.08997 * 109.58865 * 113.79641 * 10 9 7 32 32 H 1.09001 * 109.50230 * 65.31204 * 11 10 9 33 33 H 1.08999 * 109.50060 * 185.38343 * 11 10 9 34 34 H 1.09003 * 109.43139 * 301.31284 * 12 11 10 35 35 H 1.09001 * 109.48587 * 181.36058 * 12 11 10 36 36 H 0.96998 * 119.99357 * 24.94082 * 15 13 12 37 37 H 1.08000 * 120.19192 * 0.13625 * 19 18 16 38 38 H 1.07996 * 119.61982 * 179.73669 * 20 19 18 39 39 H 1.07996 * 119.77944 * 179.70378 * 23 22 21 40 40 H 1.09000 * 109.25282 * 102.16770 * 24 22 21 41 41 H 1.09000 * 109.25304 * 221.62435 * 24 22 21 42 42 H 1.08993 * 109.68453 * 170.95704 * 25 24 22 43 43 H 1.08995 * 109.68460 * 291.51850 * 25 24 22 44 44 H 1.08994 * 109.68348 * 49.85748 * 26 25 24 45 45 H 1.09004 * 109.67679 * 170.36165 * 26 25 24 46 46 H 1.08999 * 109.24727 * 282.64953 * 27 21 20 47 47 H 1.08995 * 109.24712 * 42.05990 * 27 21 20 48 48 H 1.08996 * 109.58880 * 6.62926 * 28 9 7 49 49 H 1.09006 * 109.70488 * 246.27717 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3724 -2.3611 -0.3531 10 6 1.8192 -3.6547 0.1818 11 6 2.0743 -4.6103 -0.9880 12 6 0.8190 -4.6905 -1.8599 13 6 0.5008 -3.3054 -2.4274 14 1 1.3490 -2.9476 -3.0109 15 7 -0.6831 -3.3891 -3.2864 16 6 -0.8702 -2.4827 -4.2661 17 8 -0.0566 -1.5960 -4.4374 18 6 -2.0646 -2.5676 -5.1333 19 6 -3.0051 -3.5807 -4.9386 20 6 -4.1078 -3.6521 -5.7591 21 6 -4.3014 -2.7200 -6.7730 22 6 -3.3823 -1.7105 -6.9629 23 6 -2.2636 -1.6340 -6.1474 24 6 -3.5413 -0.6602 -8.0313 25 6 -4.5408 -1.1190 -9.0909 26 6 -5.8228 -1.5716 -8.3821 27 6 -5.5280 -2.8705 -7.6351 28 6 0.2279 -2.3349 -1.2739 29 1 -0.4850 0.8401 0.0004 30 1 2.7400 -3.5172 0.7488 31 1 1.0468 -4.0685 0.8300 32 1 2.9081 -4.2405 -1.5847 33 1 2.3140 -5.6013 -0.6026 34 1 -0.0200 -5.0373 -1.2566 35 1 0.9897 -5.3884 -2.6795 36 1 -1.3322 -4.0968 -3.1499 37 1 -2.8660 -4.3069 -4.1514 38 1 -4.8332 -4.4384 -5.6112 39 1 -1.5416 -0.8455 -6.3000 40 1 -3.8982 0.2639 -7.5765 41 1 -2.5757 -0.4787 -8.5033 42 1 -4.7661 -0.2928 -9.7652 43 1 -4.1207 -1.9507 -9.6563 44 1 -6.1413 -0.8057 -7.6751 45 1 -6.6088 -1.7411 -9.1181 46 1 -5.3641 -3.6708 -8.3567 47 1 -6.3807 -3.1244 -7.0055 48 1 0.0986 -1.3267 -1.6675 49 1 -0.6757 -2.6396 -0.7459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009422452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:16 Heat of formation + Delta-G solvation = -12.282960 kcal Electronic energy + Delta-G solvation = -28000.412993 eV Core-core repulsion = 24312.453165 eV Total energy + Delta-G solvation = -3687.959828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.40724 -39.11617 -37.29052 -35.93422 -34.13653 -32.73889 -32.63310 -30.78773 -29.95684 -29.05606 -28.53141 -25.24065 -24.39637 -23.33973 -22.45967 -22.15634 -21.68292 -20.55547 -19.48771 -18.98758 -17.38596 -16.74328 -16.04062 -15.85542 -15.21620 -15.03587 -14.64199 -14.56475 -14.22384 -14.09942 -13.97910 -13.70401 -13.50951 -13.35826 -13.12834 -12.89011 -12.70254 -12.39375 -12.34468 -12.26901 -11.84401 -11.57614 -11.50019 -11.16835 -10.99396 -10.76065 -10.71253 -10.69242 -10.62693 -10.45026 -10.20097 -9.96833 -9.90832 -9.50387 -9.38252 -8.84502 -8.69667 -8.45511 -8.39899 -6.62729 -5.72165 -3.15325 0.90198 1.30007 3.07832 3.44339 3.52712 3.53721 3.55015 3.96799 4.39004 4.42474 4.57119 4.62290 4.77329 4.86435 4.91755 5.04584 5.10806 5.27449 5.29498 5.34278 5.38175 5.43022 5.55273 5.56823 5.61768 5.63598 5.66819 5.72263 5.73444 5.79847 5.92060 5.97804 6.03992 6.10542 6.16409 6.28704 6.34369 6.38859 6.44352 6.49170 6.53629 6.72259 6.79318 6.85276 6.96931 6.99367 7.33556 7.76680 7.86585 7.97042 8.51175 8.67568 9.26256 9.90455 10.45133 11.35774 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.003023 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.447400 B = 9259.542926 C =10558.104525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.117 3.883 14 H 0.082 0.918 15 N -0.715 5.715 16 C 0.552 3.448 17 O -0.529 6.529 18 C -0.125 4.125 19 C -0.090 4.090 20 C -0.129 4.129 21 C -0.061 4.061 22 C -0.086 4.086 23 C -0.061 4.061 24 C -0.082 4.082 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.082 4.082 28 C 0.167 3.833 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.391 0.609 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.759 -9.764 -16.119 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.012 3.988 14 H 0.101 0.899 15 N -0.366 5.366 16 C 0.338 3.662 17 O -0.406 6.406 18 C -0.128 4.128 19 C -0.108 4.108 20 C -0.147 4.147 21 C -0.061 4.061 22 C -0.086 4.086 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.118 4.118 28 C 0.040 3.960 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.225 0.775 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.113 0.887 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.234 -8.969 -16.190 21.651 hybrid contribution 0.027 0.415 0.236 0.478 sum -11.207 -8.554 -15.954 21.291 Atomic orbital electron populations 1.70026 1.05344 1.25418 1.53446 1.25037 0.95267 0.98503 1.00524 0.86241 0.79408 0.84008 0.77222 1.20197 1.21423 1.21773 1.19182 0.92745 0.84803 1.41793 0.91548 1.43978 1.36019 1.01645 1.49503 1.20959 0.97715 0.86887 0.92866 1.22002 0.96966 0.99334 0.98763 1.21677 0.98946 0.96034 0.98757 1.21991 0.86960 0.96913 0.92963 0.89940 1.45990 1.26282 1.30875 1.33415 1.18199 0.85516 0.82025 0.80413 1.90807 1.45233 1.33900 1.70708 1.20012 0.96329 0.97969 0.98462 1.21213 0.93724 0.97255 0.98651 1.21040 0.98203 0.99465 0.95977 1.19778 0.95768 0.94479 0.96057 1.19563 0.94387 0.96815 0.97804 1.21318 0.96546 0.97431 0.92684 1.20487 1.00297 0.96719 0.94354 1.21543 0.95474 1.01232 0.97422 1.21555 0.97580 0.97317 0.99401 1.20506 0.95003 0.98471 0.97862 1.21082 0.88685 0.99008 0.87223 0.93723 0.92607 0.96417 0.92106 0.92619 0.92280 0.93085 0.77500 0.85645 0.85752 0.84742 0.90404 0.90533 0.91399 0.91617 0.91469 0.91471 0.90521 0.90633 0.88702 0.96531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 11.19 55.49 0.62 -26.69 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 22.89 29.59 -169.99 -5.03 17.86 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 7 C -0.26 -7.31 9.59 -15.06 -0.14 -7.45 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 9 N -0.59 -15.26 2.99 -172.32 -0.52 -15.77 16 10 C 0.14 2.99 6.52 -3.71 -0.02 2.97 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.12 -1.91 5.36 -26.69 -0.14 -2.05 16 13 C 0.12 2.35 2.60 -67.81 -0.18 2.18 16 14 H 0.08 1.89 7.58 -51.93 -0.39 1.49 16 15 N -0.72 -12.33 5.03 -54.64 -0.27 -12.61 16 16 C 0.55 10.47 7.74 -12.33 -0.10 10.37 16 17 O -0.53 -12.42 16.01 5.31 0.09 -12.34 16 18 C -0.12 -1.91 5.87 -105.07 -0.62 -2.52 16 19 C -0.09 -1.09 9.54 -39.29 -0.37 -1.46 16 20 C -0.13 -1.35 9.59 -39.49 -0.38 -1.73 16 21 C -0.06 -0.64 5.75 -104.47 -0.60 -1.24 16 22 C -0.09 -1.01 5.73 -104.64 -0.60 -1.61 16 23 C -0.06 -0.88 9.16 -39.05 -0.36 -1.24 16 24 C -0.08 -0.77 5.66 -28.04 -0.16 -0.92 16 25 C -0.12 -0.88 5.98 -26.71 -0.16 -1.04 16 26 C -0.12 -0.85 5.97 -26.71 -0.16 -1.01 16 27 C -0.08 -0.62 5.67 -28.04 -0.16 -0.78 16 28 C 0.17 4.18 4.89 -3.71 -0.02 4.16 16 29 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.39 5.32 6.66 -40.82 -0.27 5.05 16 37 H 0.13 1.24 6.43 -52.49 -0.34 0.91 16 38 H 0.12 0.97 8.05 -52.49 -0.42 0.55 16 39 H 0.13 2.05 7.63 -52.49 -0.40 1.65 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 48 H 0.09 2.80 6.04 -51.93 -0.31 2.49 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -34.05 383.10 -11.77 -45.82 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.01 Total: 3.68 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.41 Total: -5.71 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.17 Total: -55.08 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.05 -11.77 -45.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009422452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.534 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds