Wall clock time and date at job start Tue Mar 31 2020 16:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47167 * 90.00276 * 3 2 1 5 5 H 1.48501 * 109.47321 * 330.00189 * 3 2 1 6 6 H 1.48504 * 109.46870 * 209.99891 * 3 2 1 7 7 C 1.38804 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00693 * 18.61201 * 7 2 1 9 9 N 1.36943 * 119.99578 * 198.61244 * 7 2 1 10 10 C 1.46926 * 120.63274 * 30.99115 * 9 7 2 11 11 C 1.53195 * 108.77661 * 126.36592 * 10 9 7 12 12 C 1.53041 * 109.31060 * 54.63569 * 11 10 9 13 13 C 1.53044 * 109.54065 * 298.63765 * 12 11 10 14 14 H 1.09005 * 109.49548 * 301.38071 * 13 12 11 15 15 N 1.46495 * 109.49961 * 181.31820 * 13 12 11 16 16 C 1.34780 * 120.00548 * 154.99922 * 15 13 12 17 17 O 1.21283 * 119.99291 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00365 * 179.97438 * 16 15 13 19 19 C 1.50693 * 109.47227 * 179.97438 * 18 16 15 20 20 C 1.38258 * 120.03390 * 269.72307 * 19 18 16 21 21 C 1.38105 * 119.93518 * 179.69804 * 20 19 18 22 22 C 1.38497 * 120.21110 * 0.59709 * 21 20 19 23 23 C 1.38214 * 119.85683 * 359.68170 * 22 21 20 24 24 C 1.38106 * 120.03469 * 89.99807 * 19 18 16 25 25 C 1.51362 * 109.76223 * 180.02562 * 23 22 21 26 26 C 1.54352 * 105.17040 * 342.81889 * 25 23 22 27 27 C 1.51372 * 130.38338 * 179.71150 * 22 21 20 28 28 C 1.46930 * 120.62663 * 210.71209 * 9 7 2 29 29 H 0.97004 * 119.99848 * 174.95695 * 1 2 3 30 30 H 1.08991 * 109.58668 * 246.15428 * 10 9 7 31 31 H 1.09001 * 109.58488 * 6.44019 * 10 9 7 32 32 H 1.08997 * 109.49935 * 174.58706 * 11 10 9 33 33 H 1.08996 * 109.49732 * 294.69282 * 11 10 9 34 34 H 1.09000 * 109.45911 * 58.65328 * 12 11 10 35 35 H 1.09000 * 109.46120 * 178.61322 * 12 11 10 36 36 H 0.97005 * 119.99741 * 334.99221 * 15 13 12 37 37 H 1.09001 * 109.47273 * 299.99869 * 18 16 15 38 38 H 1.09006 * 109.47472 * 59.99517 * 18 16 15 39 39 H 1.07997 * 120.03098 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.89525 * 180.25463 * 21 20 19 41 41 H 1.08002 * 119.88763 * 359.97438 * 24 19 18 42 42 H 1.09000 * 110.30049 * 101.73937 * 25 23 22 43 43 H 1.09000 * 110.30701 * 223.89556 * 25 23 22 44 44 H 1.09000 * 110.82018 * 268.11966 * 26 25 23 45 45 H 1.08995 * 110.82447 * 144.57167 * 26 25 23 46 46 H 1.08999 * 110.30759 * 316.09204 * 27 22 21 47 47 H 1.09002 * 110.30449 * 78.24700 * 27 22 21 48 48 H 1.08998 * 109.59046 * 353.41506 * 28 9 7 49 49 H 1.08998 * 109.58688 * 113.84707 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.5126 -2.1129 -0.2994 9 7 3.3259 -1.2333 0.3780 10 6 3.8407 -0.2850 1.3752 11 6 4.5322 -1.0718 2.4930 12 6 5.5991 -1.9845 1.8841 13 6 4.9365 -2.9813 0.9304 14 1 4.1961 -3.5680 1.4743 15 7 5.9544 -3.8747 0.3722 16 6 5.6075 -5.1011 -0.0661 17 8 4.4526 -5.4652 0.0020 18 6 6.6546 -6.0200 -0.6409 19 6 6.0115 -7.3191 -1.0526 20 6 5.9272 -8.3653 -0.1526 21 6 5.3319 -9.5529 -0.5301 22 6 4.8295 -9.7040 -1.8119 23 6 4.9188 -8.6602 -2.7135 24 6 5.5107 -7.4679 -2.3310 25 6 4.3028 -9.0702 -4.0338 26 6 4.2231 -10.6108 -3.9813 27 6 4.1473 -10.8871 -2.4647 28 6 4.2482 -2.2197 -0.2010 29 1 -0.4850 -0.8368 -0.0738 30 1 4.5577 0.3873 0.9041 31 1 3.0150 0.2936 1.7896 32 1 5.0019 -0.3775 3.1898 33 1 3.7953 -1.6762 3.0220 34 1 6.3220 -1.3817 1.3344 35 1 6.1096 -2.5274 2.6796 36 1 6.8781 -3.5836 0.3180 37 1 7.1130 -5.5494 -1.5107 38 1 7.4188 -6.2156 0.1114 39 1 6.3226 -8.2524 0.8460 40 1 5.2627 -10.3682 0.1746 41 1 5.5805 -6.6516 -3.0348 42 1 3.3049 -8.6432 -4.1344 43 1 4.9363 -8.7523 -4.8619 44 1 5.1178 -11.0599 -4.4125 45 1 3.3263 -10.9699 -4.4860 46 1 4.6745 -11.8095 -2.2213 47 1 3.1075 -10.9488 -2.1434 48 1 3.6911 -2.9191 -0.8243 49 1 4.9992 -1.7084 -0.8032 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009488941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:34 Heat of formation + Delta-G solvation = -5.604657 kcal Electronic energy + Delta-G solvation = -27659.147194 eV Core-core repulsion = 23971.476960 eV Total energy + Delta-G solvation = -3687.670235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.41955 -39.52066 -37.66647 -36.03904 -34.37584 -32.62151 -32.13081 -30.78070 -30.73887 -29.20537 -27.88757 -26.33787 -24.99480 -22.96773 -22.45240 -21.71731 -20.96636 -20.71393 -19.93837 -19.45718 -17.27882 -16.92022 -16.37328 -16.06259 -15.81419 -15.36305 -15.07041 -14.92914 -14.46697 -14.09642 -13.77033 -13.60603 -13.48914 -13.33027 -13.11730 -13.02323 -12.83311 -12.53531 -12.39927 -12.07281 -12.03716 -11.82481 -11.53445 -11.41309 -11.33683 -11.06966 -11.03690 -10.86906 -10.82007 -10.60021 -10.04909 -9.85463 -9.67398 -9.56202 -9.09610 -8.94074 -8.78793 -8.44785 -8.40315 -7.00766 -6.19560 -3.31125 1.24936 1.36781 2.83444 3.28602 3.40396 3.54654 3.70750 3.76214 4.20893 4.39385 4.59972 4.60732 4.76739 4.84549 4.92609 4.95795 5.06738 5.09115 5.24095 5.24574 5.31103 5.33855 5.40349 5.46198 5.47499 5.51957 5.55807 5.57910 5.61182 5.71853 5.84241 5.93040 5.96420 5.99966 6.06129 6.11802 6.21722 6.32084 6.33807 6.43986 6.52011 6.57056 6.57593 6.65123 6.67977 6.80791 6.94665 6.96819 7.70949 8.10435 8.44655 8.50636 9.12020 9.63186 10.24244 11.18476 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.002665 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.385908 B =10502.615963 C =11572.652110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.286 1.286 7 C -0.341 4.341 8 H 0.065 0.935 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.086 0.914 15 N -0.726 5.726 16 C 0.509 3.491 17 O -0.524 6.524 18 C -0.101 4.101 19 C -0.062 4.062 20 C -0.105 4.105 21 C -0.107 4.107 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.091 4.091 25 C -0.083 4.083 26 C -0.120 4.120 27 C -0.082 4.082 28 C 0.144 3.856 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.172 -17.864 -2.736 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.218 4.218 3 Si 0.901 3.099 4 H -0.222 1.222 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.470 4.470 8 H 0.082 0.918 9 N -0.325 5.325 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.104 0.896 15 N -0.378 5.378 16 C 0.294 3.706 17 O -0.399 6.399 18 C -0.141 4.141 19 C -0.062 4.062 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.102 4.102 23 C -0.097 4.097 24 C -0.109 4.109 25 C -0.120 4.120 26 C -0.157 4.157 27 C -0.119 4.119 28 C 0.016 3.984 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.228 0.772 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 17.083 -16.497 -2.651 23.896 hybrid contribution 0.671 -1.435 0.058 1.585 sum 17.754 -17.932 -2.594 25.367 Atomic orbital electron populations 1.70890 1.06025 1.30015 1.49330 1.26265 0.96646 1.01236 0.97613 0.83711 0.74619 0.75623 0.75920 1.22153 1.22777 1.21203 1.20259 0.85414 0.95096 1.46268 0.91770 1.44281 1.07276 1.36821 1.44132 1.21432 0.97202 0.92384 0.89434 1.22003 0.97697 0.98645 0.98865 1.21670 0.98299 0.97281 0.98075 1.21592 0.89849 0.90434 0.96135 0.89580 1.46123 1.11992 1.15453 1.64198 1.20470 0.89807 0.82008 0.78311 1.90777 1.20054 1.74841 1.54263 1.20665 0.97598 0.93164 1.02667 1.19112 0.99387 0.93985 0.93734 1.20824 0.99882 0.92878 0.98758 1.20518 0.99136 0.97745 0.95111 1.20552 0.99089 0.96439 0.94072 1.20498 0.98674 0.93993 0.96501 1.20428 0.98183 0.96403 0.95873 1.21055 1.00898 0.95650 0.94422 1.22288 1.02271 0.95412 0.95756 1.21040 1.00346 0.95928 0.94566 1.21138 0.92579 0.91677 0.92999 0.92670 0.95587 0.90691 0.92191 0.91653 0.92072 0.92556 0.77234 0.88084 0.88170 0.86147 0.86405 0.86403 0.90093 0.90796 0.91061 0.90597 0.90926 0.90276 0.91992 0.96281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.45 13.70 55.49 0.76 -28.69 16 2 C -0.02 -0.49 5.24 -17.43 -0.09 -0.58 16 3 Si 1.07 26.87 24.73 -169.99 -4.20 22.67 16 4 H -0.29 -6.85 6.57 56.52 0.37 -6.48 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.29 -6.84 6.80 56.52 0.38 -6.46 16 7 C -0.34 -10.06 9.87 -15.06 -0.15 -10.20 16 8 H 0.06 2.07 8.06 -52.49 -0.42 1.65 16 9 N -0.60 -14.97 2.73 -172.58 -0.47 -15.44 16 10 C 0.12 2.63 4.21 -3.71 -0.02 2.62 16 11 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 12 C -0.12 -1.71 5.36 -26.69 -0.14 -1.86 16 13 C 0.13 2.19 2.59 -68.03 -0.18 2.01 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.73 -9.81 5.08 -53.91 -0.27 -10.08 16 16 C 0.51 7.55 7.79 -10.99 -0.09 7.46 16 17 O -0.52 -10.62 15.70 5.55 0.09 -10.53 16 18 C -0.10 -1.04 5.83 -29.04 -0.17 -1.21 16 19 C -0.06 -0.77 4.37 -104.67 -0.46 -1.22 16 20 C -0.11 -1.26 9.70 -39.62 -0.38 -1.64 16 21 C -0.11 -1.23 10.04 -39.53 -0.40 -1.63 16 22 C -0.10 -1.18 6.14 -104.21 -0.64 -1.82 16 23 C -0.10 -1.17 6.14 -104.21 -0.64 -1.81 16 24 C -0.09 -1.16 9.70 -39.53 -0.38 -1.54 16 25 C -0.08 -0.80 6.77 -26.85 -0.18 -0.98 16 26 C -0.12 -0.93 7.08 -25.32 -0.18 -1.11 16 27 C -0.08 -0.72 6.77 -26.85 -0.18 -0.90 16 28 C 0.14 3.07 6.06 -3.93 -0.02 3.05 16 29 H 0.26 8.39 8.73 -40.82 -0.36 8.03 16 30 H 0.03 0.54 7.10 -51.93 -0.37 0.17 16 31 H 0.07 1.78 4.76 -51.93 -0.25 1.53 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.39 3.81 8.60 -40.82 -0.35 3.46 16 37 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -35.91 384.82 -10.92 -46.83 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -8.15 Total: 3.28 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -4.46 Total: -13.84 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.02 Total: -54.21 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -4.20 Total: 22.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.91 -10.92 -46.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009488941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.222 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds