Wall clock time and date at job start Tue Mar 31 2020 16:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99836 * 2 1 4 4 H 1.48507 * 109.47348 * 274.89990 * 3 2 1 5 5 H 1.48508 * 109.47143 * 34.89770 * 3 2 1 6 6 H 1.48495 * 109.47090 * 154.89681 * 3 2 1 7 7 C 1.38813 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99570 * 339.75001 * 7 2 1 9 9 N 1.36934 * 119.99631 * 159.75029 * 7 2 1 10 10 C 1.46922 * 120.63487 * 332.79791 * 9 7 2 11 11 C 1.53195 * 108.77347 * 233.59064 * 10 9 7 12 12 C 1.53038 * 109.31014 * 305.35994 * 11 10 9 13 13 C 1.53038 * 109.54036 * 61.36994 * 12 11 10 14 14 H 1.09008 * 109.49420 * 58.61207 * 13 12 11 15 15 N 1.46496 * 109.50244 * 178.68053 * 13 12 11 16 16 C 1.34776 * 120.00257 * 205.00250 * 15 13 12 17 17 O 1.21282 * 120.00015 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00183 * 179.97438 * 16 15 13 19 19 C 1.50704 * 109.47033 * 179.97438 * 18 16 15 20 20 C 1.38246 * 120.03135 * 269.97513 * 19 18 16 21 21 C 1.38701 * 120.00148 * 180.02562 * 20 19 18 22 22 C 1.38499 * 120.05262 * 359.94258 * 21 20 19 23 23 C 1.38446 * 119.81129 * 0.07092 * 22 21 20 24 24 C 1.38103 * 120.03373 * 90.00119 * 19 18 16 25 25 C 1.51370 * 109.63228 * 179.97438 * 23 22 21 26 26 C 1.54350 * 105.25161 * 17.23626 * 25 23 22 27 27 C 1.51365 * 130.39135 * 180.11655 * 22 21 20 28 28 C 1.46925 * 120.62750 * 152.77736 * 9 7 2 29 29 H 0.96998 * 120.00278 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.59039 * 113.80376 * 10 9 7 31 31 H 1.09002 * 109.58514 * 353.37491 * 10 9 7 32 32 H 1.09005 * 109.49622 * 185.41413 * 11 10 9 33 33 H 1.08995 * 109.52586 * 65.33254 * 11 10 9 34 34 H 1.08994 * 109.46469 * 301.34398 * 12 11 10 35 35 H 1.09004 * 109.44548 * 181.38078 * 12 11 10 36 36 H 0.97002 * 119.99792 * 24.99431 * 15 13 12 37 37 H 1.09000 * 109.46579 * 59.99534 * 18 16 15 38 38 H 1.08997 * 109.47093 * 299.99768 * 18 16 15 39 39 H 1.07997 * 120.03698 * 0.06425 * 20 19 18 40 40 H 1.08003 * 120.05256 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.88943 * 359.97438 * 24 19 18 42 42 H 1.09002 * 110.30681 * 258.27058 * 25 23 22 43 43 H 1.09003 * 110.30491 * 136.20805 * 25 23 22 44 44 H 1.08999 * 110.82150 * 91.82396 * 26 25 23 45 45 H 1.08996 * 110.82903 * 215.17914 * 26 25 23 46 46 H 1.08991 * 110.30574 * 43.87712 * 27 22 21 47 47 H 1.09004 * 110.30403 * 281.71574 * 27 22 21 48 48 H 1.09006 * 109.58713 * 6.62012 * 28 9 7 49 49 H 1.09007 * 109.58951 * 246.19864 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3941 2.1063 -1.3950 5 1 1.5031 2.6206 0.8010 6 1 3.5956 1.4126 0.5940 7 6 2.0103 -1.2021 -0.0005 8 1 1.5203 -2.1086 0.3228 9 7 3.3161 -1.2385 -0.4110 10 6 3.8267 -0.2511 -1.3717 11 6 4.4782 -0.9936 -2.5427 12 6 5.5407 -1.9544 -2.0043 13 6 4.8805 -2.9854 -1.0861 14 1 4.1172 -3.5310 -1.6412 15 7 5.8933 -3.9237 -0.5962 16 6 5.5329 -5.1640 -0.2112 17 8 4.3699 -5.5032 -0.2698 18 6 6.5748 -6.1294 0.2922 19 6 5.9161 -7.4353 0.6553 20 6 5.4425 -7.6382 1.9382 21 6 4.8368 -8.8405 2.2718 22 6 4.7047 -9.8381 1.3202 23 6 5.1801 -9.6320 0.0364 24 6 5.7852 -8.4306 -0.2931 25 6 4.9180 -10.8617 -0.8065 26 6 3.8496 -11.6637 -0.0334 27 6 4.0910 -11.2178 1.4243 28 6 4.2335 -2.2655 0.1013 29 1 -0.4850 0.8400 0.0004 30 1 4.5667 0.3839 -0.8847 31 1 3.0029 0.3604 -1.7398 32 1 4.9455 -0.2740 -3.2149 33 1 3.7187 -1.5574 -3.0843 34 1 6.2869 -1.3928 -1.4424 35 1 6.0228 -2.4661 -2.8374 36 1 6.8234 -3.6523 -0.5491 37 1 7.0620 -5.7112 1.1730 38 1 7.3176 -6.3010 -0.4868 39 1 5.5434 -6.8607 2.6809 40 1 4.4662 -8.9997 3.2737 41 1 6.1554 -8.2713 -1.2951 42 1 5.8298 -11.4498 -0.9114 43 1 4.5391 -10.5743 -1.7873 44 1 2.8469 -11.3894 -0.3611 45 1 4.0126 -12.7355 -0.1462 46 1 3.1471 -11.1720 1.9673 47 1 4.7802 -11.9020 1.9193 48 1 3.6781 -2.9831 0.7052 49 1 5.0067 -1.7947 0.7086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009488942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:37 Heat of formation + Delta-G solvation = 0.303358 kcal Electronic energy + Delta-G solvation = -27623.134255 eV Core-core repulsion = 23935.720211 eV Total energy + Delta-G solvation = -3687.414044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.37537 -39.49568 -37.67741 -36.00851 -34.36922 -32.56010 -32.08955 -30.82438 -30.75952 -29.20925 -27.85804 -26.34102 -25.29050 -22.96562 -22.46896 -21.96165 -20.95309 -20.70253 -19.95916 -19.46100 -16.89621 -16.80274 -16.32296 -16.05421 -15.74885 -15.38112 -15.17711 -14.82048 -14.67231 -13.97168 -13.79119 -13.70550 -13.30316 -13.25258 -13.15059 -13.05082 -12.83743 -12.58111 -12.36676 -12.12634 -11.96465 -11.77007 -11.51601 -11.40110 -11.32599 -11.10381 -11.02904 -10.90693 -10.80952 -10.73777 -10.13584 -9.96722 -9.75346 -9.62255 -9.43189 -8.96131 -8.76520 -8.50183 -8.42309 -6.94840 -5.90174 -3.26919 1.27007 1.37678 2.85375 3.29207 3.33097 3.49370 3.52059 3.77197 4.22457 4.39726 4.55524 4.62450 4.78172 4.86757 4.93981 4.95344 5.05744 5.07839 5.21697 5.25861 5.29539 5.36159 5.42618 5.45119 5.46966 5.48437 5.53666 5.59384 5.63970 5.72685 5.83602 5.94061 5.95957 6.01283 6.05008 6.12958 6.20807 6.31300 6.35858 6.43878 6.54109 6.57463 6.58493 6.63542 6.65506 6.80625 6.95486 6.97380 7.72130 8.00027 8.37801 8.47713 8.98299 9.75649 10.11335 11.25858 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.002548 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.456259 B =10987.485303 C =11653.709061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.122 3.878 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.089 0.911 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.522 6.522 18 C -0.101 4.101 19 C -0.062 4.062 20 C -0.103 4.103 21 C -0.106 4.106 22 C -0.101 4.101 23 C -0.099 4.099 24 C -0.092 4.092 25 C -0.082 4.082 26 C -0.121 4.121 27 C -0.081 4.081 28 C 0.146 3.854 29 H 0.262 0.738 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.866 -19.032 -0.655 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.104 0.896 9 N -0.326 5.326 10 C -0.003 4.003 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.107 0.893 15 N -0.378 5.378 16 C 0.294 3.706 17 O -0.397 6.397 18 C -0.141 4.141 19 C -0.062 4.062 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.099 4.099 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.159 4.159 27 C -0.118 4.118 28 C 0.018 3.982 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 16.817 -19.194 -0.675 25.528 hybrid contribution 0.883 1.344 0.034 1.608 sum 17.700 -17.850 -0.641 25.147 Atomic orbital electron populations 1.69841 1.05701 1.26448 1.53169 1.25268 0.95236 0.97507 0.99628 0.86934 0.80076 0.84719 0.76864 1.21692 1.23199 1.19543 1.18961 0.84599 0.94861 1.40155 0.89591 1.44291 1.08548 1.32225 1.47501 1.21394 0.97283 0.92068 0.89568 1.22005 0.97887 0.98332 0.99002 1.21671 0.98324 0.96970 0.98380 1.21671 0.90136 0.89340 0.96873 0.89283 1.46114 1.11412 1.13346 1.66941 1.20470 0.89898 0.82300 0.77954 1.90785 1.19403 1.76857 1.52672 1.20669 0.97562 0.92658 1.03205 1.19106 0.99442 0.93896 0.93797 1.21003 0.98170 0.96834 0.96088 1.20698 0.99884 0.92896 0.98916 1.20609 0.99468 0.95836 0.94199 1.20532 0.98924 0.95050 0.95428 1.20373 0.99712 0.92245 0.98668 1.21029 0.99084 0.93305 0.98434 1.22291 0.99355 0.99662 0.94546 1.21023 1.00484 0.92757 0.97564 1.21208 0.92645 0.91239 0.93087 0.92799 0.95577 0.90880 0.92263 0.91422 0.92136 0.92497 0.77252 0.88033 0.88255 0.85956 0.86258 0.86575 0.90474 0.90779 0.90871 0.90679 0.90758 0.90464 0.91517 0.96080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.62 13.97 55.49 0.78 -27.84 16 2 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 3 Si 0.88 22.68 24.34 -169.99 -4.14 18.54 16 4 H -0.29 -7.12 6.70 56.52 0.38 -6.74 16 5 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.27 -6.76 6.45 56.52 0.36 -6.40 16 7 C -0.26 -7.51 10.04 -15.06 -0.15 -7.66 16 8 H 0.09 2.74 8.05 -52.49 -0.42 2.31 16 9 N -0.60 -14.78 2.77 -172.32 -0.48 -15.25 16 10 C 0.12 2.67 4.19 -3.71 -0.02 2.65 16 11 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 12 C -0.12 -1.69 5.35 -26.69 -0.14 -1.84 16 13 C 0.13 2.13 2.60 -67.81 -0.18 1.96 16 14 H 0.09 1.81 7.58 -51.92 -0.39 1.41 16 15 N -0.73 -9.56 5.08 -53.69 -0.27 -9.83 16 16 C 0.51 7.38 7.79 -10.98 -0.09 7.29 16 17 O -0.52 -10.39 15.70 5.56 0.09 -10.30 16 18 C -0.10 -1.02 5.83 -29.03 -0.17 -1.19 16 19 C -0.06 -0.76 4.37 -104.67 -0.46 -1.22 16 20 C -0.10 -1.26 9.72 -39.41 -0.38 -1.65 16 21 C -0.11 -1.25 10.07 -39.31 -0.40 -1.64 16 22 C -0.10 -1.16 6.14 -104.12 -0.64 -1.80 16 23 C -0.10 -1.16 6.15 -104.12 -0.64 -1.80 16 24 C -0.09 -1.11 9.70 -39.54 -0.38 -1.50 16 25 C -0.08 -0.73 6.76 -26.85 -0.18 -0.91 16 26 C -0.12 -0.96 7.08 -25.32 -0.18 -1.14 16 27 C -0.08 -0.71 6.77 -26.85 -0.18 -0.89 16 28 C 0.15 3.03 6.09 -3.71 -0.02 3.01 16 29 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 30 H 0.03 0.56 6.98 -51.93 -0.36 0.20 16 31 H 0.07 1.75 4.49 -51.93 -0.23 1.52 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.39 3.69 8.60 -40.82 -0.35 3.34 16 37 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 1.54 7.93 -51.93 -0.41 1.12 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -35.56 383.98 -10.83 -46.39 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.13 Total: 2.70 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -4.46 Total: -10.19 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.02 Total: -52.93 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.56 -10.83 -46.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009488942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.690 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds