Wall clock time and date at job start Tue Mar 31 2020 16:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99984 * 2 1 4 4 H 1.48503 * 109.47098 * 240.00160 * 3 2 1 5 5 H 1.48501 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47042 * 120.00087 * 3 2 1 7 7 C 1.38804 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00563 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64504 * 359.96961 * 9 7 2 11 11 C 1.54327 * 107.26877 * 178.96074 * 10 9 7 12 12 C 1.55159 * 102.94204 * 337.81338 * 11 10 9 13 13 H 1.08999 * 111.00130 * 277.37973 * 12 11 10 14 14 N 1.46504 * 111.00146 * 153.57326 * 12 11 10 15 15 C 1.34774 * 119.99697 * 154.99463 * 14 12 11 16 16 O 1.21555 * 119.99882 * 0.02562 * 15 14 12 17 17 C 1.47848 * 119.99942 * 179.97438 * 15 14 12 18 18 C 1.39273 * 119.84969 * 326.15836 * 17 15 14 19 19 C 1.37943 * 119.60681 * 180.75492 * 18 17 15 20 20 C 1.38081 * 119.85954 * 358.93803 * 19 18 17 21 21 C 1.39117 * 120.85529 * 0.27577 * 20 19 18 22 22 C 1.37104 * 119.87965 * 0.81965 * 21 20 19 23 23 C 1.50899 * 123.41209 * 177.79436 * 22 21 20 24 24 C 1.52780 * 111.51209 * 29.73961 * 23 22 21 25 25 C 1.52985 * 108.41921 * 268.48115 * 24 23 22 26 26 C 1.52568 * 109.66539 * 60.84241 * 25 24 23 27 27 C 1.50602 * 117.43865 * 181.64589 * 21 20 19 28 28 C 1.47421 * 125.64671 * 179.97438 * 9 7 2 29 29 H 0.97002 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.87984 * 59.55153 * 10 9 7 31 31 H 1.08998 * 109.88272 * 298.38205 * 10 9 7 32 32 H 1.08992 * 110.72156 * 219.44164 * 11 10 9 33 33 H 1.09000 * 110.86654 * 96.24376 * 11 10 9 34 34 H 0.96994 * 119.99917 * 334.99590 * 14 12 11 35 35 H 1.07997 * 120.19720 * 0.48261 * 18 17 15 36 36 H 1.07997 * 120.07008 * 179.20854 * 19 18 17 37 37 H 1.08003 * 119.57016 * 180.02562 * 20 19 18 38 38 H 1.09009 * 109.07098 * 150.26493 * 23 22 21 39 39 H 1.09003 * 109.07208 * 269.21367 * 23 22 21 40 40 H 1.09000 * 109.67029 * 28.21136 * 24 23 22 41 41 H 1.08994 * 109.67324 * 148.71070 * 24 23 22 42 42 H 1.09007 * 109.43742 * 180.90013 * 25 24 23 43 43 H 1.09000 * 109.44032 * 300.81700 * 25 24 23 44 44 H 1.08993 * 109.80315 * 152.59950 * 26 25 24 45 45 H 1.09002 * 109.79656 * 273.40762 * 26 25 24 46 46 H 1.08993 * 109.17714 * 109.67638 * 27 21 20 47 47 H 1.09000 * 109.13624 * 350.41497 * 27 21 20 48 48 H 1.09001 * 110.36920 * 85.27010 * 28 9 7 49 49 H 1.08997 * 110.36955 * 322.94131 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1375 -2.5327 -0.0016 11 6 -0.4485 -4.0441 -0.0297 12 6 0.8520 -4.6556 -0.6149 13 1 0.8566 -4.5955 -1.7032 14 7 1.0291 -6.0393 -0.1674 15 6 1.7593 -6.8981 -0.9062 16 8 2.2712 -6.5244 -1.9434 17 6 1.9386 -8.2944 -0.4544 18 6 2.0186 -8.5776 0.9069 19 6 2.2016 -9.8802 1.3224 20 6 2.2819 -10.8947 0.3890 21 6 2.1863 -10.6215 -0.9717 22 6 2.0269 -9.3286 -1.3992 23 6 1.9628 -8.9367 -2.8550 24 6 1.3762 -10.0576 -3.7116 25 6 2.5256 -10.9309 -4.2181 26 6 3.2678 -11.5409 -3.0329 27 6 2.2459 -11.7899 -1.9200 28 6 1.9335 -3.7311 -0.0028 29 1 -0.4850 0.8401 0.0004 30 1 -0.5576 -2.0514 -0.8848 31 1 -0.5543 -2.0852 0.9006 32 1 -1.2985 -4.2509 -0.6798 33 1 -0.6333 -4.4212 0.9761 34 1 0.6209 -6.3373 0.6604 35 1 1.9423 -7.7816 1.6328 36 1 2.2775 -10.1067 2.3756 37 1 2.4248 -11.9129 0.7195 38 1 1.3408 -8.0474 -2.9574 39 1 2.9689 -8.7086 -3.2071 40 1 0.6947 -10.6600 -3.1110 41 1 0.8391 -9.6298 -4.5580 42 1 2.1264 -11.7280 -4.8454 43 1 3.2148 -10.3207 -4.8019 44 1 3.7270 -12.4836 -3.3303 45 1 4.0354 -10.8506 -2.6830 46 1 1.2622 -11.9409 -2.3644 47 1 2.5301 -12.6850 -1.3667 48 1 2.1667 -4.0429 1.0153 49 1 2.8328 -3.7399 -0.6186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014845281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:33 Heat of formation + Delta-G solvation = 6.375001 kcal Electronic energy + Delta-G solvation = -28055.152319 eV Core-core repulsion = 24368.001561 eV Total energy + Delta-G solvation = -3687.150758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.81771 -39.12248 -37.22762 -36.85169 -34.05811 -32.96940 -31.96466 -31.35471 -29.97185 -29.05739 -27.10617 -25.75553 -24.91202 -24.47853 -23.44839 -20.82913 -20.54313 -20.30093 -19.89661 -19.75648 -17.47075 -16.77156 -16.48735 -16.01555 -15.88092 -15.49205 -14.76673 -14.68566 -14.47545 -14.09943 -13.99791 -13.87640 -13.45301 -13.31042 -12.85917 -12.72445 -12.52404 -12.41870 -12.30666 -12.14261 -12.06899 -11.79473 -11.31660 -11.02031 -10.96695 -10.91790 -10.82768 -10.78220 -10.72808 -10.50955 -10.31876 -10.12162 -9.89947 -9.72759 -9.53991 -9.00117 -8.77437 -8.65176 -8.57097 -6.83191 -5.70326 -3.03937 0.81436 1.17955 2.87327 3.31921 3.43057 3.46818 3.48423 3.64115 4.39847 4.46894 4.52076 4.62813 4.69457 4.71471 4.82435 4.89007 5.00154 5.05970 5.28048 5.28432 5.29480 5.43179 5.45535 5.49075 5.56446 5.60686 5.63515 5.70060 5.75335 5.80212 5.80716 5.96501 5.99383 6.03765 6.08955 6.16865 6.19269 6.23292 6.28200 6.33465 6.42731 6.48216 6.60266 6.70116 6.74939 6.98434 7.54301 7.58305 7.70870 7.82532 8.25550 8.38993 9.22870 9.82725 10.47662 11.41554 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022860 B = 0.002497 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.573982 B =11210.557711 C =11676.790340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.098 0.902 14 N -0.710 5.710 15 C 0.554 3.446 16 O -0.530 6.530 17 C -0.130 4.130 18 C -0.089 4.089 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.087 4.087 22 C -0.019 4.019 23 C -0.084 4.084 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.083 4.083 28 C 0.130 3.870 29 H 0.253 0.747 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.019 0.981 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 -26.881 -1.240 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.188 4.188 12 C 0.022 3.978 13 H 0.116 0.884 14 N -0.360 5.360 15 C 0.340 3.660 16 O -0.407 6.407 17 C -0.133 4.133 18 C -0.108 4.108 19 C -0.148 4.148 20 C -0.118 4.118 21 C -0.087 4.087 22 C -0.019 4.019 23 C -0.121 4.121 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.120 4.120 28 C 0.002 3.998 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.231 0.769 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.037 0.963 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.402 -26.331 -1.996 26.444 hybrid contribution 0.291 0.817 0.700 1.114 sum 1.692 -25.514 -1.297 25.603 Atomic orbital electron populations 1.69938 1.04873 1.25186 1.57176 1.24801 0.95753 0.97673 1.02222 0.86174 0.78440 0.83064 0.77941 1.21108 1.21581 1.21177 1.19028 0.90472 0.82278 1.43758 0.90442 1.44385 1.01625 0.99775 1.87267 1.21144 0.84516 0.87407 1.01472 1.23185 0.95883 1.00029 0.99738 1.22338 0.96905 0.78465 1.00107 0.88436 1.45976 1.52549 1.11544 1.25945 1.18289 0.78864 0.84881 0.83917 1.90783 1.47919 1.78343 1.23674 1.20116 1.05951 0.93360 0.93911 1.21264 0.97879 0.97275 0.94362 1.20993 1.01513 0.92596 0.99744 1.21409 0.98714 0.99292 0.92405 1.19507 1.01233 0.93725 0.94194 1.19714 0.95374 0.91256 0.95605 1.20756 1.03161 0.98658 0.89490 1.21805 0.97962 0.97180 0.99530 1.21646 0.97694 0.99149 0.97499 1.21560 0.97895 1.00917 0.95139 1.20729 1.00672 0.94931 0.95656 1.21811 0.94844 0.86177 0.96947 0.93681 0.93224 0.93572 0.91612 0.92073 0.76854 0.85385 0.85542 0.85948 0.89519 0.89769 0.91044 0.91560 0.92186 0.91774 0.91592 0.91477 0.89905 0.91407 0.96340 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.76 3.39 -170.09 -0.58 -16.34 16 10 C 0.18 4.34 5.37 -3.06 -0.02 4.32 16 11 C -0.15 -2.71 6.60 -24.89 -0.16 -2.87 16 12 C 0.13 2.33 3.42 -65.79 -0.23 2.10 16 13 H 0.10 1.98 7.54 -51.93 -0.39 1.58 16 14 N -0.71 -10.51 5.10 -52.68 -0.27 -10.78 16 15 C 0.55 8.65 6.88 -12.33 -0.08 8.56 16 16 O -0.53 -10.02 13.89 5.32 0.07 -9.95 16 17 C -0.13 -1.68 5.82 -104.78 -0.61 -2.29 16 18 C -0.09 -0.95 9.32 -39.30 -0.37 -1.31 16 19 C -0.13 -1.17 10.04 -39.75 -0.40 -1.57 16 20 C -0.10 -0.87 9.56 -39.31 -0.38 -1.25 16 21 C -0.09 -0.85 5.13 -104.76 -0.54 -1.38 16 22 C -0.02 -0.22 5.55 -104.14 -0.58 -0.80 16 23 C -0.08 -1.01 3.98 -27.90 -0.11 -1.12 16 24 C -0.13 -1.18 5.62 -26.85 -0.15 -1.33 16 25 C -0.12 -0.96 5.63 -26.96 -0.15 -1.11 16 26 C -0.12 -0.90 5.75 -26.89 -0.15 -1.05 16 27 C -0.08 -0.62 5.18 -27.86 -0.14 -0.77 16 28 C 0.13 2.83 6.93 -2.54 -0.02 2.81 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 31 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 34 H 0.40 4.77 7.62 -40.82 -0.31 4.46 16 35 H 0.13 1.18 7.49 -52.49 -0.39 0.79 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.77 7.80 -52.48 -0.41 0.36 16 38 H 0.09 1.24 5.90 -51.92 -0.31 0.93 16 39 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 40 H 0.07 0.62 5.39 -51.93 -0.28 0.34 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.61 7.80 -51.93 -0.41 0.20 16 46 H 0.08 0.59 5.76 -51.93 -0.30 0.29 16 47 H 0.07 0.41 7.70 -51.93 -0.40 0.01 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -32.35 374.78 -11.62 -43.97 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.71 Total: 2.78 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.34 Total: -6.03 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.27 Total: -53.84 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.35 -11.62 -43.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014845281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.348 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds