Wall clock time and date at job start Tue Mar 31 2020 16:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99752 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99745 * 3 2 1 7 7 C 1.38810 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00213 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00063 * 180.02562 * 7 2 1 10 10 C 1.46492 * 120.00376 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.84975 * 25.33120 * 10 9 7 12 12 C 1.53778 * 113.62124 * 156.52984 * 10 9 7 13 13 C 1.53780 * 87.08651 * 139.97935 * 12 10 9 14 14 H 1.08999 * 113.61507 * 220.02393 * 13 12 10 15 15 N 1.46494 * 113.61272 * 89.20067 * 13 12 10 16 16 C 1.34777 * 120.00018 * 155.00233 * 15 13 12 17 17 O 1.21284 * 119.99682 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00300 * 179.97438 * 16 15 13 19 19 C 1.51593 * 108.49095 * 304.87020 * 18 16 15 20 20 C 1.53177 * 110.92882 * 170.56853 * 19 18 16 21 21 C 1.51467 * 108.42086 * 85.60649 * 20 19 18 22 22 C 1.38385 * 119.52343 * 109.34866 * 21 20 19 23 23 C 1.38295 * 119.61782 * 179.97438 * 22 21 20 24 24 C 1.38263 * 120.05430 * 0.02562 * 23 22 21 25 25 C 1.38288 * 120.05767 * 359.93993 * 24 23 22 26 26 C 1.37034 * 120.14995 * 289.30374 * 21 20 19 27 27 C 1.51465 * 120.15770 * 359.97438 * 26 21 20 28 28 C 1.51588 * 108.49368 * 179.97438 * 18 16 15 29 29 C 1.53788 * 113.61443 * 254.13524 * 10 9 7 30 30 H 0.97006 * 119.99732 * 0.02562 * 1 2 3 31 31 H 0.97009 * 120.00147 * 359.97438 * 9 7 2 32 32 H 1.09005 * 113.61827 * 254.53214 * 12 10 9 33 33 H 1.09007 * 113.61333 * 25.34788 * 12 10 9 34 34 H 0.97005 * 120.00304 * 335.00259 * 15 13 12 35 35 H 1.09003 * 108.42048 * 62.36308 * 18 16 15 36 36 H 1.08991 * 109.18225 * 290.95956 * 19 18 16 37 37 H 1.08994 * 109.18259 * 50.20917 * 19 18 16 38 38 H 1.09006 * 109.65258 * 325.93089 * 20 19 18 39 39 H 1.09003 * 109.66955 * 205.29178 * 20 19 18 40 40 H 1.08004 * 120.19796 * 359.95215 * 22 21 20 41 41 H 1.08003 * 119.97450 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.96827 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.19438 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.63744 * 311.04838 * 27 26 21 45 45 H 1.08996 * 109.81363 * 190.53032 * 27 26 21 46 46 H 1.09000 * 109.18440 * 309.78655 * 28 18 16 47 47 H 1.09001 * 109.18590 * 69.08492 * 28 18 16 48 48 H 1.08992 * 113.61205 * 334.56814 * 29 10 9 49 49 H 1.08997 * 113.61230 * 105.46769 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 3.5477 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5376 -3.2913 -0.4291 12 6 5.5396 -2.3581 -0.5595 13 6 5.9718 -3.3167 0.5626 14 1 6.9280 -3.0556 1.0159 15 7 5.8855 -4.7313 0.1915 16 6 6.6617 -5.6400 0.8145 17 8 7.4320 -5.2865 1.6821 18 6 6.5726 -7.0952 0.4332 19 6 5.1291 -7.5391 0.5646 20 6 4.9305 -8.9374 -0.0285 21 6 5.2705 -9.9610 1.0349 22 6 4.2584 -10.7110 1.6079 23 6 4.5667 -11.6465 2.5786 24 6 5.8794 -11.8288 2.9726 25 6 6.8865 -11.0767 2.3958 26 6 6.5716 -10.1423 1.4248 27 6 7.6765 -9.3204 0.7940 28 6 7.5498 -7.8771 1.2886 29 6 4.7532 -2.8120 1.3567 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3621 0.0007 32 1 5.6506 -2.7779 -1.5593 33 1 5.9661 -1.3589 -0.4703 34 1 5.2696 -5.0140 -0.5027 35 1 6.8695 -7.1965 -0.6107 36 1 4.8537 -7.5545 1.6190 37 1 4.4878 -6.8324 0.0380 38 1 5.5892 -9.0684 -0.8870 39 1 3.8925 -9.0609 -0.3373 40 1 3.2336 -10.5664 1.2991 41 1 3.7813 -12.2347 3.0299 42 1 6.1185 -12.5594 3.7311 43 1 7.9126 -11.2176 2.7016 44 1 7.5780 -9.3459 -0.2913 45 1 8.6474 -9.7227 1.0832 46 1 8.5272 -7.3965 1.2460 47 1 7.1981 -7.8826 2.3202 48 1 4.9647 -1.9376 1.9720 49 1 4.2301 -3.5978 1.9016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020333248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:23 Heat of formation + Delta-G solvation = 5.335997 kcal Electronic energy + Delta-G solvation = -27509.547586 eV Core-core repulsion = 23822.351773 eV Total energy + Delta-G solvation = -3687.195812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79855 -39.79128 -38.26510 -36.24599 -34.22319 -33.38839 -32.65617 -31.62075 -30.41105 -29.82999 -26.64648 -25.25895 -24.65480 -24.18207 -22.78076 -22.12985 -21.59553 -20.34502 -19.99797 -19.19127 -17.58665 -17.38911 -16.87696 -16.07737 -15.48650 -15.35209 -15.22840 -14.97962 -14.57682 -14.43751 -14.02327 -13.98471 -13.57187 -13.35195 -13.28838 -12.95780 -12.68688 -12.60261 -12.33317 -12.23322 -12.13232 -12.02676 -11.97092 -11.73177 -11.19884 -11.01433 -10.96426 -10.95252 -10.87738 -10.69150 -10.46231 -10.17872 -9.91934 -9.70047 -9.60030 -9.01796 -8.97113 -8.84897 -8.78817 -7.31029 -5.82053 -3.17937 1.14533 1.15026 2.63334 3.16868 3.34564 3.37336 3.42695 3.52574 4.27332 4.41403 4.47968 4.54733 4.61987 4.66170 4.73574 4.78576 4.90502 4.99352 5.06207 5.08417 5.14278 5.17797 5.24435 5.33642 5.35609 5.40254 5.44019 5.47632 5.49955 5.66891 5.72603 5.74283 5.80934 5.84592 5.91508 5.97818 5.99745 6.09144 6.10273 6.16866 6.27325 6.28307 6.43156 6.46261 6.50803 6.57496 6.78906 6.94777 7.56188 7.93462 8.26327 8.37522 9.14987 9.87702 10.07260 11.36070 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002338 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.074760 B =11973.134016 C =12928.565517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.173 3.827 11 H 0.081 0.919 12 C -0.162 4.162 13 C 0.116 3.884 14 H 0.096 0.904 15 N -0.707 5.707 16 C 0.515 3.485 17 O -0.543 6.543 18 C -0.101 4.101 19 C -0.109 4.109 20 C -0.079 4.079 21 C -0.079 4.079 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.078 4.078 27 C -0.080 4.080 28 C -0.095 4.095 29 C -0.176 4.176 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.400 0.600 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.344 -23.854 -0.042 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.061 3.939 11 H 0.099 0.901 12 C -0.202 4.202 13 C 0.011 3.989 14 H 0.114 0.886 15 N -0.358 5.358 16 C 0.301 3.699 17 O -0.420 6.420 18 C -0.123 4.123 19 C -0.147 4.147 20 C -0.116 4.116 21 C -0.079 4.079 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.135 4.135 26 C -0.078 4.078 27 C -0.117 4.117 28 C -0.133 4.133 29 C -0.218 4.218 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.235 0.765 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.612 -23.608 0.569 28.309 hybrid contribution 0.106 1.099 -0.149 1.114 sum 15.718 -22.509 0.420 27.457 Atomic orbital electron populations 1.69705 1.05135 1.25920 1.57198 1.24702 0.95270 0.97308 1.01818 0.86548 0.79253 0.84914 0.77795 1.21026 1.20270 1.21681 1.19114 0.80652 0.94752 1.43367 0.89180 1.42749 1.04112 1.01975 1.88832 1.21599 0.89362 0.89954 0.92953 0.90135 1.23853 0.99357 0.99310 0.97669 1.21812 0.99808 0.79622 0.97698 0.88629 1.45755 1.42234 1.07268 1.40535 1.20714 0.79792 0.87934 0.81466 1.90685 1.38448 1.81383 1.31476 1.20923 0.97406 0.91776 1.02157 1.21322 0.94144 0.96347 1.02875 1.20830 1.02370 0.92250 0.96122 1.19651 0.92795 0.97283 0.98201 1.21167 0.98886 0.96203 0.97045 1.21149 0.96528 0.98734 0.97883 1.21136 0.93103 0.99884 1.00132 1.21131 0.99267 0.96291 0.96831 1.19664 0.94270 0.96714 0.97105 1.20834 0.96432 0.94189 1.00269 1.21083 0.99363 0.93128 0.99742 1.24291 0.96492 1.00827 1.00172 0.92997 0.80397 0.91411 0.89298 0.76465 0.88795 0.90918 0.90626 0.90385 0.90375 0.85929 0.86276 0.86339 0.86102 0.90590 0.90719 0.90374 0.91116 0.89751 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.96 13.97 55.49 0.78 -28.19 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.84 27.74 -169.99 -4.71 17.12 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.25 -6.88 10.45 -15.06 -0.16 -7.03 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.74 -16.91 5.21 -52.64 -0.27 -17.18 16 10 C 0.17 3.11 4.35 -67.12 -0.29 2.82 16 11 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 12 C -0.16 -2.34 7.58 -25.92 -0.20 -2.54 16 13 C 0.12 1.65 4.33 -67.03 -0.29 1.36 16 14 H 0.10 1.45 7.46 -51.93 -0.39 1.06 16 15 N -0.71 -8.44 5.05 -52.93 -0.27 -8.71 16 16 C 0.51 6.49 7.14 -10.99 -0.08 6.41 16 17 O -0.54 -8.98 15.30 5.55 0.08 -8.90 16 18 C -0.10 -0.91 2.02 -93.20 -0.19 -1.10 16 19 C -0.11 -0.92 4.86 -27.35 -0.13 -1.05 16 20 C -0.08 -0.57 5.47 -27.41 -0.15 -0.72 16 21 C -0.08 -0.69 4.98 -104.63 -0.52 -1.22 16 22 C -0.12 -0.99 9.69 -39.51 -0.38 -1.38 16 23 C -0.12 -1.03 10.05 -39.55 -0.40 -1.43 16 24 C -0.12 -1.02 10.05 -39.55 -0.40 -1.41 16 25 C -0.12 -0.99 9.69 -39.51 -0.38 -1.37 16 26 C -0.08 -0.68 4.98 -104.63 -0.52 -1.20 16 27 C -0.08 -0.60 5.45 -27.46 -0.15 -0.75 16 28 C -0.10 -0.89 4.33 -27.40 -0.12 -1.01 16 29 C -0.18 -2.95 7.69 -25.82 -0.20 -3.15 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.36 8.20 5.77 -40.82 -0.24 7.97 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.28 8.11 -51.92 -0.42 0.86 16 34 H 0.40 3.90 7.64 -40.82 -0.31 3.59 16 35 H 0.09 0.66 7.82 -51.93 -0.41 0.26 16 36 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 37 H 0.08 0.59 6.87 -51.93 -0.36 0.23 16 38 H 0.08 0.49 6.90 -51.93 -0.36 0.13 16 39 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 40 H 0.12 0.88 7.97 -52.48 -0.42 0.47 16 41 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.82 7.98 -52.49 -0.42 0.40 16 44 H 0.08 0.49 6.90 -51.93 -0.36 0.13 16 45 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 46 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 47 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 48 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -33.39 384.26 -11.09 -44.49 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.84 Total: 10.29 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -4.65 Total: -14.71 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.23 Total: -54.08 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.39 -11.09 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020333248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.823 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds